T0545

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0545

MvR76 from unknown species

Target type: Server only

Target sequence:

>T0545 MvR76, unknown species, 158 residues
MIKRGFPAVLDENTEILILGSLPSDESIRKQQYYGNPGNDFWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSREGSQDSKIGDEEINDFSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRRFSKNRESEWEAVFRH

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l3f

Jmol of T0545 structure : 2l3f

PyMOL of T0545

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0545A1-1611-158

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Uracil-DNA glycosylase-like. This is a Rossmann fold, three layers, a/b/a, four strand beta-sheet, order 2134.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1mug_A | PyMOL of 1mug A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Uracil DNA glycosylase superfamily (PF03167).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0545 T0545 T0545 T0545
First score First Z-score Best score Best Z-score
1 TS407 66.9870 60.1500 1.1263 1.7169 66.9870 60.1500 1.1263 1.7169 TS407 1
2 TS361 66.3460 57.4790 1.0042 1.2005 66.5060 58.6540 1.0347 1.4277 TS361 2
3 TS104 66.1860 59.1350 0.9737 1.5207 66.1860 59.1350 0.9737 1.5207 TS104 3
4 TS457 66.1860 58.3870 0.9737 1.3761 66.1860 58.3870 0.9737 1.3761 TS457 4
5 TS490 66.1860 57.2120 0.9737 1.1489 66.1860 57.9590 0.9737 1.2933 TS490 5
6 TS380 66.1860 55.6090 0.9737 0.8390 67.9490 61.0040 1.3095 1.8821 TS380 6
7 TS470 66.1860 55.6090 0.9737 0.8390 66.8270 56.8380 1.0958 1.0766 TS470 7
8 TS428 65.8650 56.6770 0.9126 1.0455 67.1470 56.6770 1.1568 1.0455 TS428 8
9 TS395 65.8650 56.6770 0.9126 1.0455 65.8650 56.6770 0.9126 1.0455 TS395 9
10 TS321 65.3850 59.2950 0.8212 1.5516 65.3850 59.2950 0.8212 1.5516 TS321 10
11 TS253 65.3850 56.1970 0.8212 0.9527 65.3850 56.1970 0.8212 0.9527 TS253 11
12 TS037 65.3850 54.4870 0.8212 0.6221 66.5060 58.0660 1.0347 1.3140 TS037 12
13 TS276 65.2240 57.1050 0.7905 1.1282 65.2240 57.1050 0.7905 1.1282 TS276 13
14 TS286 65.2240 57.1050 0.7905 1.1282 65.2240 57.1050 0.7905 1.1282 TS286 14
15 TS345 65.0640 56.3030 0.7601 0.9732 65.0640 56.3030 0.7601 0.9732 TS345 15
16 TS207 64.7440 57.2650 0.6991 1.1592 64.9040 57.2650 0.7296 1.1592 TS207 16
17 TS275 64.4230 55.5560 0.6380 0.8288 64.4230 55.5560 0.6380 0.8288 TS275 17
18 TS056 64.4230 53.4190 0.6380 0.4156 64.4230 53.4190 0.6380 0.4156 TS056 18
19 TS119 64.2630 51.3350 0.6075 0.0127 65.3850 57.0510 0.8212 1.1178 TS119 19
20 TS094 64.1030 56.8380 0.5770 1.0766 66.8270 57.0510 1.0958 1.1178 TS094 20
21 TS236 64.1030 54.0600 0.5770 0.5395 64.1030 57.3720 0.5770 1.1799 TS236 21
22 TS114 64.1030 53.4190 0.5770 0.4156 64.2630 55.9830 0.6075 0.9113 TS114 22
23 TS077 63.9420 55.8230 0.5464 0.8804 63.9420 55.8230 0.5464 0.8804 TS077 23
24 TS435 63.9420 55.8230 0.5464 0.8804 64.2630 55.8230 0.6075 0.8804 TS435 24
25 TS214 63.9420 51.7630 0.5464 0.0954 63.9420 52.1900 0.5464 0.1780 TS214 25
26 TS481 63.7820 55.9830 0.5159 0.9113 64.5830 58.1200 0.6685 1.3245 TS481 26
27 TS088 63.7820 55.8760 0.5159 0.8906 63.7820 56.0360 0.5159 0.9216 TS088 27
28 TS304 63.7820 55.2350 0.5159 0.7667 63.7820 55.2350 0.5159 0.7667 TS304 28
29 TS220 63.6220 54.8610 0.4854 0.6944 63.6220 54.8610 0.4854 0.6944 TS220 29
30 TS447 63.6220 54.8610 0.4854 0.6944 63.6220 54.8610 0.4854 0.6944 TS447 30
31 TS174 63.6220 54.1130 0.4854 0.5498 63.6220 54.1130 0.4854 0.5498 TS174 31
32 TS429 63.6220 53.9000 0.4854 0.5086 63.6220 56.3030 0.4854 0.9732 TS429 32
33 TS291 63.6220 53.9000 0.4854 0.5086 63.6220 53.9000 0.4854 0.5086 TS291 33
34 TS102 63.6220 52.7240 0.4854 0.2812 64.1030 52.7240 0.5770 0.2812 TS102 34
35 TS002 63.4620 53.2050 0.4550 0.3742 63.6220 55.7160 0.4854 0.8597 TS002 35
36 TS103 63.4620 49.4660 0.4550 -0.3487 63.4620 51.4960 0.4550 0.0438 TS103 36
37 TS208 63.3010 53.4720 0.4243 0.4258 63.4620 53.4720 0.4550 0.4258 TS208 37
38 TS060 62.9810 54.4340 0.3634 0.6118 65.8650 58.1200 0.9126 1.3245 TS060 38
39 TS074 62.9810 54.1130 0.3634 0.5498 62.9810 54.1130 0.3634 0.5498 TS074 39
40 TS001 62.9810 53.5790 0.3634 0.4465 62.9810 53.5790 0.3634 0.4465 TS001 40
41 TS018 62.9810 53.3650 0.3634 0.4052 63.1410 53.6320 0.3938 0.4568 TS018 41
42 TS449 62.9810 52.0830 0.3634 0.1573 62.9810 52.0830 0.3634 0.1573 TS449 42
43 TS453 62.9810 52.0830 0.3634 0.1573 62.9810 52.0830 0.3634 0.1573 TS453 43
44 TS346 62.9810 52.0830 0.3634 0.1573 62.9810 52.0830 0.3634 0.1573 TS346 44
45 TS307 62.8210 53.9530 0.3329 0.5188 62.8210 53.9530 0.3329 0.5188 TS307 45
46 TS166 62.8210 50.5340 0.3329 -0.1422 63.4620 54.5940 0.4550 0.6428 TS166 46
47 TS028 62.6600 54.4340 0.3022 0.6118 62.9810 54.4340 0.3634 0.6118 TS028 47
48 TS215 62.6600 53.5790 0.3022 0.4465 63.6220 55.7160 0.4854 0.8597 TS215 48
49 TS080 62.6600 53.5790 0.3022 0.4465 63.6220 55.7160 0.4854 0.8597 TS080 49
50 TS245 62.6600 52.5110 0.3022 0.2401 62.6600 52.5110 0.3022 0.2401 TS245 50
51 TS452 62.6600 52.0830 0.3022 0.1573 62.6600 52.0830 0.3022 0.1573 TS452 51
52 TS113 62.5000 52.9910 0.2718 0.3329 66.0260 56.0900 0.9433 0.9320 TS113 52
53 TS319 62.5000 51.8160 0.2718 0.1057 62.8210 51.8160 0.3329 0.1057 TS319 53
54 TS273 62.5000 51.8160 0.2718 0.1057 62.8210 51.8160 0.3329 0.1057 TS273 54
55 TS436 62.3400 54.0060 0.2413 0.5291 62.3400 54.0060 0.2413 0.5291 TS436 55
56 TS419 62.3400 48.5040 0.2413 -0.5346 63.6220 55.0750 0.4854 0.7358 TS419 56
57 TS391 62.1790 54.2740 0.2106 0.5809 62.1790 54.2740 0.2106 0.5809 TS391 57
58 TS213 62.0190 52.6180 0.1802 0.2607 64.1030 53.4190 0.5770 0.4156 TS213 58
59 TS409 61.5380 54.5940 0.0885 0.6428 62.8210 54.5940 0.3329 0.6428 TS409 59
60 TS063 61.2180 49.1990 0.0276 -0.4003 61.8590 53.0980 0.1497 0.3535 TS063 60
61 TS127 60.8970 49.6790 -0.0335 -0.3075 62.8210 56.1970 0.3329 0.9527 TS127 61
62 TS302 60.5770 53.7390 -0.0945 0.4775 63.6220 54.8610 0.4854 0.6944 TS302 62
63 TS142 60.5770 53.7390 -0.0945 0.4775 63.6220 54.8610 0.4854 0.6944 TS142 63
64 TS171 60.5770 50.1070 -0.0945 -0.2247 62.1790 50.1070 0.2106 -0.2247 TS171 64
65 TS366 60.5770 47.8100 -0.0945 -0.6688 62.0190 52.8850 0.1802 0.3124 TS366 65
66 TS420 60.4170 48.9850 -0.1249 -0.4416 61.8590 51.3350 0.1497 0.0127 TS420 66
67 TS471 60.4170 48.9850 -0.1249 -0.4416 61.8590 51.3350 0.1497 0.0127 TS471 67
68 TS026 60.0960 46.5280 -0.1861 -0.9167 62.5000 48.9850 0.2718 -0.4416 TS026 68
69 TS055 59.9360 47.8630 -0.2165 -0.6586 60.0960 49.3060 -0.1861 -0.3796 TS055 69
70 AL396 59.6150 48.8250 -0.2777 -0.4726 60.8970 50.7480 -0.0335 -0.1008 AL396 70
71 TS047 59.2950 49.1450 -0.3386 -0.4107 59.2950 49.1450 -0.3386 -0.4107 TS047 71
72 TS476 59.2950 48.6110 -0.3386 -0.5140 62.1790 51.6560 0.2106 0.0748 TS476 72
73 TS173 58.8140 51.3350 -0.4302 0.0127 63.3010 52.4040 0.4243 0.2194 TS173 73
74 TS244 58.6540 46.4740 -0.4607 -0.9271 58.8140 50.5880 -0.4302 -0.1317 TS244 74
75 TS218 58.4940 48.9850 -0.4912 -0.4416 58.6540 48.9850 -0.4607 -0.4416 TS218 75
76 TS165 57.3720 46.9020 -0.7048 -0.8444 62.3400 53.1520 0.2413 0.3640 TS165 76
77 TS117 56.5710 47.8100 -0.8574 -0.6688 56.7310 47.8630 -0.8269 -0.6586 TS117 77
78 TS250 56.5710 47.3820 -0.8574 -0.7516 59.4550 49.1450 -0.3082 -0.4107 TS250 78
79 TS228 52.7240 46.2070 -1.5900 -0.9787 60.8970 50.6410 -0.0335 -0.1215 TS228 79
80 TS296 51.2820 42.4150 -1.8647 -1.7119 62.9810 53.5790 0.3634 0.4465 TS296 80
81 TS289 50.9620 41.7740 -1.9256 -1.8358 50.9620 41.7740 -1.9256 -1.8358 TS289 81
82 AL285 46.9550 37.6600 -2.6887 -2.6312 47.7560 41.6670 -2.5362 -1.8565 AL285 82
83 TS328 46.3140 38.6220 -2.8108 -2.4452 46.3140 38.6220 -2.8108 -2.4452 TS328 83
84 TS257 24.5190 18.1090 -6.9616 -6.4111 24.5190 18.1090 -6.9616 -6.4111 TS257 84
85 TS014 18.7500 16.7200 -8.0602 -6.6796 25.6410 19.5510 -6.7479 -6.1323 TS014 85
86 TS350 16.9870 15.3850 -8.3960 -6.9377 26.1220 20.4590 -6.6563 -5.9567 TS350 86
87 TS229 16.3460 12.8740 -8.5181 -7.4232 16.3460 13.9960 -8.5181 -7.2063 TS229 87
88 TS355 14.4230 13.5150 -8.8843 -7.2993 18.5900 16.2930 -8.0907 -6.7622 TS355 88
89 RANDOM 14.20 11.84 -8.9268 -7.6231 14.20 11.84 -8.9268 -7.6231 RANDOM 89
90 TS264 13.9420 13.0880 -8.9759 -7.3818 16.6670 14.1030 -8.4569 -7.1856 TS264 90
91 TS129 11.6990 10.2030 -9.4031 -7.9396 11.8590 10.2030 -9.3726 -7.9396 TS129 91
92 TS009             -8.9268 -7.6231             -8.9268 -7.6231 TS009 92
93 TS016             -8.9268 -7.6231             -8.9268 -7.6231 TS016 93
94 TS020             -8.9268 -7.6231             -8.9268 -7.6231 TS020 94
95 TS029             -8.9268 -7.6231             -8.9268 -7.6231 TS029 95
96 TS033             -8.9268 -7.6231             -8.9268 -7.6231 TS033 96
97 TS035             -8.9268 -7.6231             -8.9268 -7.6231 TS035 97
98 TS039             -8.9268 -7.6231             -8.9268 -7.6231 TS039 98
99 TS042             -8.9268 -7.6231             -8.9268 -7.6231 TS042 99
100 TS044             -8.9268 -7.6231             -8.9268 -7.6231 TS044 100
101 TS045             -8.9268 -7.6231             -8.9268 -7.6231 TS045 101
102 TS061             -8.9268 -7.6231             -8.9268 -7.6231 TS061 102
103 TS075             -8.9268 -7.6231             -8.9268 -7.6231 TS075 103
104 TS083             -8.9268 -7.6231             -8.9268 -7.6231 TS083 104
105 TS084             -8.9268 -7.6231             -8.9268 -7.6231 TS084 105
106 TS086             -8.9268 -7.6231             -8.9268 -7.6231 TS086 106
107 TS096             -8.9268 -7.6231             -8.9268 -7.6231 TS096 107
108 TS105             -8.9268 -7.6231             -8.9268 -7.6231 TS105 108
109 TS110             -8.9268 -7.6231             -8.9268 -7.6231 TS110 109
110 TS140             -8.9268 -7.6231             -8.9268 -7.6231 TS140 110
111 TS147             -8.9268 -7.6231             -8.9268 -7.6231 TS147 111
112 TS149             -8.9268 -7.6231             -8.9268 -7.6231 TS149 112
113 TS150             -8.9268 -7.6231             -8.9268 -7.6231 TS150 113
114 TS152             -8.9268 -7.6231             -8.9268 -7.6231 TS152 114
115 TS153             -8.9268 -7.6231             -8.9268 -7.6231 TS153 115
116 TS154             -8.9268 -7.6231             -8.9268 -7.6231 TS154 116
117 TS160             -8.9268 -7.6231             -8.9268 -7.6231 TS160 117
118 TS170             -8.9268 -7.6231             -8.9268 -7.6231 TS170 118
119 TS172             -8.9268 -7.6231             -8.9268 -7.6231 TS172 119
120 TS178             -8.9268 -7.6231             -8.9268 -7.6231 TS178 120
121 TS180             -8.9268 -7.6231             -8.9268 -7.6231 TS180 121
122 TS182             -8.9268 -7.6231             -8.9268 -7.6231 TS182 122
123 TS184             -8.9268 -7.6231             -8.9268 -7.6231 TS184 123
124 TS186             -8.9268 -7.6231             -8.9268 -7.6231 TS186 124
125 TS189             -8.9268 -7.6231             -8.9268 -7.6231 TS189 125
126 TS192             -8.9268 -7.6231             -8.9268 -7.6231 TS192 126
127 TS199             -8.9268 -7.6231             -8.9268 -7.6231 TS199 127
128 TS200             -8.9268 -7.6231             -8.9268 -7.6231 TS200 128
129 TS206             -8.9268 -7.6231             -8.9268 -7.6231 TS206 129
130 TS240             -8.9268 -7.6231             -8.9268 -7.6231 TS240 130
131 TS242             -8.9268 -7.6231             -8.9268 -7.6231 TS242 131
132 TS248             -8.9268 -7.6231             -8.9268 -7.6231 TS248 132
133 TS254             -8.9268 -7.6231             -8.9268 -7.6231 TS254 133
134 TS261             -8.9268 -7.6231             -8.9268 -7.6231 TS261 134
135 TS263             -8.9268 -7.6231             -8.9268 -7.6231 TS263 135
136 TS269             -8.9268 -7.6231             -8.9268 -7.6231 TS269 136
137 TS278             -8.9268 -7.6231             -8.9268 -7.6231 TS278 137
138 TS279             -8.9268 -7.6231             -8.9268 -7.6231 TS279 138
139 TS282             -8.9268 -7.6231             -8.9268 -7.6231 TS282 139
140 TS295             -8.9268 -7.6231             -8.9268 -7.6231 TS295 140
141 TS297             -8.9268 -7.6231             -8.9268 -7.6231 TS297 141
142 TS299             -8.9268 -7.6231             -8.9268 -7.6231 TS299 142
143 TS300             -8.9268 -7.6231             -8.9268 -7.6231 TS300 143
144 TS301             -8.9268 -7.6231             -8.9268 -7.6231 TS301 144
145 TS311             -8.9268 -7.6231             -8.9268 -7.6231 TS311 145
146 TS314             -8.9268 -7.6231             -8.9268 -7.6231 TS314 146
147 TS316             -8.9268 -7.6231             -8.9268 -7.6231 TS316 147
148 TS322             -8.9268 -7.6231             -8.9268 -7.6231 TS322 148
149 TS324             -8.9268 -7.6231             -8.9268 -7.6231 TS324 149
150 TS330             -8.9268 -7.6231             -8.9268 -7.6231 TS330 150
151 TS331             -8.9268 -7.6231             -8.9268 -7.6231 TS331 151
152 TS333             -8.9268 -7.6231             -8.9268 -7.6231 TS333 152
153 TS336             -8.9268 -7.6231             -8.9268 -7.6231 TS336 153
154 TS347             -8.9268 -7.6231             -8.9268 -7.6231 TS347 154
155 TS353             -8.9268 -7.6231             -8.9268 -7.6231 TS353 155
156 TS358             -8.9268 -7.6231             -8.9268 -7.6231 TS358 156
157 TS360             -8.9268 -7.6231             -8.9268 -7.6231 TS360 157
158 TS362             -8.9268 -7.6231             -8.9268 -7.6231 TS362 158
159 TS365             -8.9268 -7.6231             -8.9268 -7.6231 TS365 159
160 TS373             -8.9268 -7.6231             -8.9268 -7.6231 TS373 160
161 TS382             -8.9268 -7.6231             -8.9268 -7.6231 TS382 161
162 TS386             -8.9268 -7.6231             -8.9268 -7.6231 TS386 162
163 TS399             -8.9268 -7.6231             -8.9268 -7.6231 TS399 163
164 TS400             -8.9268 -7.6231             -8.9268 -7.6231 TS400 164
165 TS402             -8.9268 -7.6231             -8.9268 -7.6231 TS402 165
166 TS403             -8.9268 -7.6231             -8.9268 -7.6231 TS403 166
167 TS408             -8.9268 -7.6231             -8.9268 -7.6231 TS408 167
168 TS418             -8.9268 -7.6231             -8.9268 -7.6231 TS418 168
169 TS423             -8.9268 -7.6231             -8.9268 -7.6231 TS423 169
170 TS424             -8.9268 -7.6231             -8.9268 -7.6231 TS424 170
171 TS433             -8.9268 -7.6231             -8.9268 -7.6231 TS433 171
172 TS439             -8.9268 -7.6231             -8.9268 -7.6231 TS439 172
173 TS444             -8.9268 -7.6231             -8.9268 -7.6231 TS444 173
174 TS450             -8.9268 -7.6231             -8.9268 -7.6231 TS450 174
175 TS458             -8.9268 -7.6231             -8.9268 -7.6231 TS458 175
176 TS461             -8.9268 -7.6231             -8.9268 -7.6231 TS461 176
177 TS477             -8.9268 -7.6231             -8.9268 -7.6231 TS477 177
178 TS484             -8.9268 -7.6231             -8.9268 -7.6231 TS484 178