T0522

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0522

NP_384335.1 from SINORHIZOBIUM MELILOTI 1021

Target type: Server only

Target sequence:

>T0522 NP_384335.1, SINORHIZOBIUM MELILOTI 1021, 134 residues
MTTFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3nrd

Jmol of T0522 structure : 3nrd

PyMOL of T0522

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0522A0-1341-134
T0522B1-1341-134
T0522C1-1341-134
T0522D0-1341-134

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

HIT-like fold. 3 layers, alpha-beta(3)-alpha-beta(2)-alpha; antiparrel sheet. sheet order: 12354. It can also be viewed as a permuation of ferredoxin-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3i4s_A | PyMOL of 3i4s A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

This is a Histidine triad protein. HIT domain (PF01230).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0522 T0522 T0522 T0522
First score First Z-score Best score Best Z-score
1 TS104 96.7050 89.0830 0.7910 0.4959 96.7050 89.0830 0.7910 0.4959 TS104 1
2 TS353 96.5120 95.9950 0.7781 0.9075 96.5120 95.9950 0.7781 0.9075 TS353 2
3 TS228 96.5120 95.9950 0.7781 0.9075 96.5120 95.9950 0.7781 0.9075 TS228 3
4 TS165 95.9300 88.6950 0.7391 0.4728 95.9300 88.6950 0.7391 0.4728 TS165 4
5 TS236 95.9300 87.0160 0.7391 0.3728 95.9300 95.5430 0.7391 0.8806 TS236 5
6 TS321 95.7360 95.2200 0.7262 0.8614 95.7360 95.2200 0.7262 0.8614 TS321 6
7 TS080 95.7360 94.9610 0.7262 0.8460 95.7360 94.9610 0.7262 0.8460 TS080 7
8 TS094 95.7360 94.8320 0.7262 0.8383 95.7360 95.1060 0.7262 0.8546 TS094 8
9 TS361 95.7360 93.6690 0.7262 0.7690 95.7360 95.1720 0.7262 0.8585 TS361 9
10 TS314 95.7360 85.0130 0.7262 0.2536 95.7360 85.0130 0.7262 0.2536 TS314 10
11 TS207 95.5430 93.4750 0.7132 0.7575 95.5430 94.2510 0.7132 0.8037 TS207 11
12 TS407 95.5220 94.5270 0.7118 0.8201 95.9300 95.5430 0.7391 0.8806 TS407 12
13 TS490 95.4370 94.9070 0.7061 0.8428 95.7360 94.9070 0.7262 0.8428 TS490 13
14 TS275 95.4370 94.9070 0.7061 0.8428 95.4370 94.9070 0.7061 0.8428 TS275 14
15 TS345 95.3490 94.7030 0.7002 0.8306 95.3490 94.7030 0.7002 0.8306 TS345 15
16 TS452 95.3490 94.5740 0.7002 0.8229 95.5430 95.0260 0.7132 0.8498 TS452 16
17 TS276 95.3490 93.7980 0.7002 0.7767 95.3490 93.7980 0.7002 0.7767 TS276 17
18 TS077 95.3490 93.7980 0.7002 0.7767 95.3490 93.7980 0.7002 0.7767 TS077 18
19 TS435 95.3490 93.7980 0.7002 0.7767 95.3490 93.7980 0.7002 0.7767 TS435 19
20 TS286 95.3490 93.7980 0.7002 0.7767 95.3490 93.7980 0.7002 0.7767 TS286 20
21 TS215 95.3490 92.5060 0.7002 0.6998 95.3490 92.5060 0.7002 0.6998 TS215 21
22 TS409 95.3490 91.7310 0.7002 0.6536 95.3490 91.7310 0.7002 0.6536 TS409 22
23 TS119 95.3490 90.4390 0.7002 0.5767 95.7360 95.1060 0.7262 0.8546 TS119 23
24 TS481 95.3490 83.2040 0.7002 0.1458 95.3490 92.1830 0.7002 0.6805 TS481 24
25 TS114 95.3490 78.8110 0.7002 -0.1158 95.7360 92.5710 0.7262 0.7036 TS114 25
26 TS428 95.1550 94.6380 0.6872 0.8267 95.1550 94.6380 0.6872 0.8267 TS428 26
27 TS047 95.1550 83.9150 0.6872 0.1882 95.1550 83.9150 0.6872 0.1882 TS047 27
28 TS470 95.1550 83.6560 0.6872 0.1728 95.7360 94.5740 0.7262 0.8229 TS470 28
29 TS037 95.0400 94.5110 0.6795 0.8192 95.5430 95.0260 0.7132 0.8498 TS037 29
30 TS366 94.9630 94.2160 0.6744 0.8016 95.3490 94.2160 0.7002 0.8016 TS366 30
31 TS063 94.9630 94.2160 0.6744 0.8016 95.3490 94.2160 0.7002 0.8016 TS063 31
32 TS307 94.9610 93.9280 0.6743 0.7845 94.9630 94.1140 0.6744 0.7955 TS307 32
33 TS088 94.9610 93.9280 0.6743 0.7845 95.5430 94.5090 0.7132 0.8191 TS088 33
34 TS113 94.9610 93.9280 0.6743 0.7845 95.7360 95.2200 0.7262 0.8614 TS113 34
35 TS244 94.9610 93.9280 0.6743 0.7845 94.9610 93.9280 0.6743 0.7845 TS244 35
36 TS291 94.9610 78.2950 0.6743 -0.1465 94.9610 87.9840 0.6743 0.4305 TS291 36
37 TS028 94.8410 94.5770 0.6662 0.8231 94.8410 94.5770 0.6662 0.8231 TS028 37
38 TS302 94.8410 94.5770 0.6662 0.8231 94.8410 94.5770 0.6662 0.8231 TS302 38
39 TS142 94.8410 94.5770 0.6662 0.8231 94.8410 94.5770 0.6662 0.8231 TS142 39
40 TS319 94.6430 94.3780 0.6530 0.8113 94.6430 94.3780 0.6530 0.8113 TS319 40
41 AL396 94.6430 94.3780 0.6530 0.8113 94.6430 94.3780 0.6530 0.8113 AL396 41
42 TS273 94.6430 94.3780 0.6530 0.8113 94.6430 94.3780 0.6530 0.8113 TS273 42
43 TS001 94.6430 94.3780 0.6530 0.8113 94.6430 94.3780 0.6530 0.8113 TS001 43
44 TS296 94.6430 94.3780 0.6530 0.8113 94.6430 94.3780 0.6530 0.8113 TS296 44
45 TS026 94.5740 93.7980 0.6483 0.7767 94.5740 93.7980 0.6483 0.7767 TS026 45
46 TS103 94.5740 92.8940 0.6483 0.7229 95.1550 92.8940 0.6872 0.7229 TS103 46
47 TS436 93.9920 92.4420 0.6094 0.6960 93.9920 92.4420 0.6094 0.6960 TS436 47
48 TS380 93.8430 93.0970 0.5994 0.7350 93.8430 93.0970 0.5994 0.7350 TS380 48
49 TS457 93.7980 92.7650 0.5964 0.7152 93.7980 92.7650 0.5964 0.7152 TS457 49
50 TS174 93.6050 92.5710 0.5835 0.7036 93.6050 92.5710 0.5835 0.7036 TS174 50
51 TS429 93.6050 92.5710 0.5835 0.7036 93.7980 92.7650 0.5964 0.7152 TS429 51
52 TS056 93.4520 93.0560 0.5732 0.7325 94.6430 94.3780 0.6530 0.8113 TS056 52
53 TS214 93.2170 90.6330 0.5575 0.5882 93.6050 92.1830 0.5835 0.6805 TS214 53
54 TS213 93.0560 92.5260 0.5467 0.7010 94.5740 94.0570 0.6483 0.7921 TS213 54
55 TS173 92.9100 92.1640 0.5369 0.6794 93.0560 92.5260 0.5467 0.7010 TS173 55
56 TS253 92.8570 92.0630 0.5334 0.6734 95.5220 94.5270 0.7118 0.8201 TS253 56
57 TS127 92.8290 91.5370 0.5315 0.6421 94.5740 94.0570 0.6483 0.7921 TS127 57
58 TS476 91.4680 84.1930 0.4403 0.2047 91.4680 87.8310 0.4403 0.4214 TS476 58
59 TS420 91.4680 84.1930 0.4403 0.2047 91.4680 87.6610 0.4403 0.4113 TS420 59
60 TS171 91.4680 84.1930 0.4403 0.2047 91.4680 87.6610 0.4403 0.4113 TS171 60
61 TS471 91.4680 84.1930 0.4403 0.2047 91.4680 87.6610 0.4403 0.4113 TS471 61
62 TS018 91.2790 78.4240 0.4277 -0.1388 95.1550 94.6380 0.6872 0.8267 TS018 62
63 TS002 91.0850 88.7600 0.4147 0.4767 95.9300 93.0880 0.7391 0.7344 TS002 63
64 TS117 90.8730 89.9470 0.4005 0.5474 90.8730 89.9470 0.4005 0.5474 TS117 64
65 TS166 90.8730 88.4920 0.4005 0.4607 90.8730 88.4920 0.4005 0.4607 TS166 65
66 TS419 90.3100 82.5580 0.3628 0.1074 90.3100 82.5580 0.3628 0.1074 TS419 66
67 TS184 89.4840 87.1030 0.3075 0.3780 89.4840 87.1030 0.3075 0.3780 TS184 67
68 TS055 89.2860 87.4340 0.2942 0.3977 89.2860 87.4340 0.2942 0.3977 TS055 68
69 AL285 88.8890 86.5080 0.2676 0.3426 93.0230 92.7650 0.5445 0.7152 AL285 69
70 TS395 88.2460 87.5000 0.2246 0.4017 89.5520 89.0550 0.3120 0.4943 TS395 70
71 TS218 86.3810 82.6490 0.0997 0.1128 86.5670 83.8500 0.1122 0.1843 TS218 71
72 TS250 85.3170 81.3490 0.0285 0.0354 89.5350 88.5010 0.3109 0.4613 TS250 72
73 TS208 80.9520 76.7200 -0.2638 -0.2403 86.7540 85.7240 0.1247 0.2959 TS208 73
74 TS449 80.0390 78.2300 -0.3250 -0.1504 80.0390 78.2300 -0.3250 -0.1504 TS449 74
75 TS453 80.0390 78.2300 -0.3250 -0.1504 80.0390 78.2300 -0.3250 -0.1504 TS453 75
76 TS346 80.0390 78.2300 -0.3250 -0.1504 80.0390 78.2300 -0.3250 -0.1504 TS346 76
77 TS391 78.3730 73.0820 -0.4365 -0.4569 78.3730 73.0820 -0.4365 -0.4569 TS391 77
78 TS102 72.2220 68.3860 -0.8484 -0.7366 95.1550 94.6380 0.6872 0.8267 TS102 78
79 TS477 72.2220 63.7570 -0.8484 -1.0122 72.2220 63.7570 -0.8484 -1.0122 TS477 79
80 TS074 71.0320 66.7990 -0.9281 -0.8311 71.0320 66.7990 -0.9281 -0.8311 TS074 80
81 TS304 59.7220 53.3730 -1.6855 -1.6306 60.5160 55.2250 -1.6323 -1.5203 TS304 81
82 TS245 43.0560 35.7800 -2.8015 -2.6783 43.0560 35.7800 -2.8015 -2.6783 TS245 82
83 TS355 28.5710 26.9180 -3.7715 -3.2060 31.7830 26.9180 -3.5564 -3.2060 TS355 83
84 TS257 24.6030 21.9580 -4.0372 -3.5014 27.9760 25.4630 -3.8113 -3.2927 TS257 84
85 TS289 24.2540 20.6470 -4.0606 -3.5795 24.2540 20.6470 -4.0606 -3.5795 TS289 85
86 TS014 24.2250 21.4470 -4.0625 -3.5318 34.4960 30.1030 -3.3747 -3.0163 TS014 86
87 TS350 23.6110 23.0820 -4.1036 -3.4345 27.1830 23.2140 -3.8644 -3.4266 TS350 87
88 TS229 18.6050 17.5710 -4.4389 -3.7626 19.8410 17.6000 -4.3561 -3.7609 TS229 88
89 TS264 18.0560 14.2200 -4.4756 -3.9622 24.4400 21.5170 -4.0481 -3.5276 TS264 89
90 RANDOM 15.07 13.15 -4.6756 -4.0259 15.07 13.15 -4.6756 -4.0259 RANDOM 90
91 TS129 13.4920 11.7720 -4.7812 -4.1080 14.4840 13.1610 -4.7148 -4.0253 TS129 91
92 TS009             -4.6756 -4.0259             -4.6756 -4.0259 TS009 92
93 TS016             -4.6756 -4.0259             -4.6756 -4.0259 TS016 93
94 TS020             -4.6756 -4.0259             -4.6756 -4.0259 TS020 94
95 TS029             -4.6756 -4.0259             -4.6756 -4.0259 TS029 95
96 TS033             -4.6756 -4.0259             -4.6756 -4.0259 TS033 96
97 TS035             -4.6756 -4.0259             -4.6756 -4.0259 TS035 97
98 TS039             -4.6756 -4.0259             -4.6756 -4.0259 TS039 98
99 TS042             -4.6756 -4.0259             -4.6756 -4.0259 TS042 99
100 TS044             -4.6756 -4.0259             -4.6756 -4.0259 TS044 100
101 TS045             -4.6756 -4.0259             -4.6756 -4.0259 TS045 101
102 TS060             -4.6756 -4.0259             -4.6756 -4.0259 TS060 102
103 TS061             -4.6756 -4.0259             -4.6756 -4.0259 TS061 103
104 TS075             -4.6756 -4.0259             -4.6756 -4.0259 TS075 104
105 TS083             -4.6756 -4.0259             -4.6756 -4.0259 TS083 105
106 TS084             -4.6756 -4.0259             -4.6756 -4.0259 TS084 106
107 TS086             -4.6756 -4.0259             -4.6756 -4.0259 TS086 107
108 TS096             -4.6756 -4.0259             -4.6756 -4.0259 TS096 108
109 TS105             -4.6756 -4.0259             -4.6756 -4.0259 TS105 109
110 TS110             -4.6756 -4.0259             -4.6756 -4.0259 TS110 110
111 TS140             -4.6756 -4.0259             -4.6756 -4.0259 TS140 111
112 TS147             -4.6756 -4.0259             -4.6756 -4.0259 TS147 112
113 TS149             -4.6756 -4.0259             -4.6756 -4.0259 TS149 113
114 TS150             -4.6756 -4.0259             -4.6756 -4.0259 TS150 114
115 TS152             -4.6756 -4.0259             -4.6756 -4.0259 TS152 115
116 TS153             -4.6756 -4.0259             -4.6756 -4.0259 TS153 116
117 TS154             -4.6756 -4.0259             -4.6756 -4.0259 TS154 117
118 TS160             -4.6756 -4.0259             -4.6756 -4.0259 TS160 118
119 TS170             -4.6756 -4.0259             -4.6756 -4.0259 TS170 119
120 TS172             -4.6756 -4.0259             -4.6756 -4.0259 TS172 120
121 TS178             -4.6756 -4.0259             -4.6756 -4.0259 TS178 121
122 TS180             -4.6756 -4.0259             -4.6756 -4.0259 TS180 122
123 TS182             -4.6756 -4.0259             -4.6756 -4.0259 TS182 123
124 TS186             -4.6756 -4.0259             -4.6756 -4.0259 TS186 124
125 TS189             -4.6756 -4.0259             -4.6756 -4.0259 TS189 125
126 TS192             -4.6756 -4.0259             -4.6756 -4.0259 TS192 126
127 TS199             -4.6756 -4.0259             -4.6756 -4.0259 TS199 127
128 TS200             -4.6756 -4.0259             -4.6756 -4.0259 TS200 128
129 TS206             -4.6756 -4.0259             -4.6756 -4.0259 TS206 129
130 TS220             -4.6756 -4.0259             -4.6756 -4.0259 TS220 130
131 TS240             -4.6756 -4.0259             -4.6756 -4.0259 TS240 131
132 TS242             -4.6756 -4.0259             -4.6756 -4.0259 TS242 132
133 TS248             -4.6756 -4.0259             -4.6756 -4.0259 TS248 133
134 TS254             -4.6756 -4.0259             -4.6756 -4.0259 TS254 134
135 TS261             -4.6756 -4.0259             -4.6756 -4.0259 TS261 135
136 TS263             -4.6756 -4.0259             -4.6756 -4.0259 TS263 136
137 TS269             -4.6756 -4.0259             -4.6756 -4.0259 TS269 137
138 TS278             -4.6756 -4.0259             -4.6756 -4.0259 TS278 138
139 TS279             -4.6756 -4.0259             -4.6756 -4.0259 TS279 139
140 TS282             -4.6756 -4.0259             -4.6756 -4.0259 TS282 140
141 TS295             -4.6756 -4.0259             -4.6756 -4.0259 TS295 141
142 TS297             -4.6756 -4.0259             -4.6756 -4.0259 TS297 142
143 TS299             -4.6756 -4.0259             -4.6756 -4.0259 TS299 143
144 TS300             -4.6756 -4.0259             -4.6756 -4.0259 TS300 144
145 TS301             -4.6756 -4.0259             -4.6756 -4.0259 TS301 145
146 TS311             -4.6756 -4.0259             -4.6756 -4.0259 TS311 146
147 TS316             -4.6756 -4.0259             -4.6756 -4.0259 TS316 147
148 TS322             -4.6756 -4.0259             -4.6756 -4.0259 TS322 148
149 TS324             -4.6756 -4.0259             -4.6756 -4.0259 TS324 149
150 TS328             -4.6756 -4.0259             -4.6756 -4.0259 TS328 150
151 TS330             -4.6756 -4.0259             -4.6756 -4.0259 TS330 151
152 TS331             -4.6756 -4.0259             -4.6756 -4.0259 TS331 152
153 TS333             -4.6756 -4.0259             -4.6756 -4.0259 TS333 153
154 TS336             -4.6756 -4.0259             -4.6756 -4.0259 TS336 154
155 TS347             -4.6756 -4.0259             -4.6756 -4.0259 TS347 155
156 TS358             -4.6756 -4.0259             -4.6756 -4.0259 TS358 156
157 TS360             -4.6756 -4.0259             -4.6756 -4.0259 TS360 157
158 TS362             -4.6756 -4.0259             -4.6756 -4.0259 TS362 158
159 TS365             -4.6756 -4.0259             -4.6756 -4.0259 TS365 159
160 TS373             -4.6756 -4.0259             -4.6756 -4.0259 TS373 160
161 TS382             -4.6756 -4.0259             -4.6756 -4.0259 TS382 161
162 TS386             -4.6756 -4.0259             -4.6756 -4.0259 TS386 162
163 TS399             -4.6756 -4.0259             -4.6756 -4.0259 TS399 163
164 TS400             -4.6756 -4.0259             -4.6756 -4.0259 TS400 164
165 TS402             -4.6756 -4.0259             -4.6756 -4.0259 TS402 165
166 TS403             -4.6756 -4.0259             -4.6756 -4.0259 TS403 166
167 TS408             -4.6756 -4.0259             -4.6756 -4.0259 TS408 167
168 TS418             -4.6756 -4.0259             -4.6756 -4.0259 TS418 168
169 TS423             -4.6756 -4.0259             -4.6756 -4.0259 TS423 169
170 TS424             -4.6756 -4.0259             -4.6756 -4.0259 TS424 170
171 TS433             -4.6756 -4.0259             -4.6756 -4.0259 TS433 171
172 TS439             -4.6756 -4.0259             -4.6756 -4.0259 TS439 172
173 TS444             -4.6756 -4.0259             -4.6756 -4.0259 TS444 173
174 TS447             -4.6756 -4.0259             -4.6756 -4.0259 TS447 174
175 TS450             -4.6756 -4.0259             -4.6756 -4.0259 TS450 175
176 TS458             -4.6756 -4.0259             -4.6756 -4.0259 TS458 176
177 TS461             -4.6756 -4.0259             -4.6756 -4.0259 TS461 177
178 TS484             -4.6756 -4.0259             -4.6756 -4.0259 TS484 178