T0619

Targets
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643      

T0619

HmR208A from Haloarcula marismortui

Target type: Human/Server

Target sequence:

>T0619 HmR208A, Haloarcula marismortui, 111 residues
LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTILEHHHHHH

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: NESG
PDB ID: 3nrw

Jmol of T0619 structure : 3nrw

PyMOL of T0619

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0619A4-1071-101

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Integrase; DNA-binding protein, four-helix bundle. SAM domain-like.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2oxo_A | PyMOL of 2oxo A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Phage_integr_N: Phage integrase, N-terminal SAM-like domain (PF02899).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0619 T0619 T0619 T0619
First score First Z-score Best score Best Z-score
1 TS484 91.8320 85.0660 1.5065 1.5746 92.5740 88.0360 1.5605 1.7568 TS484 1
2 TS321 89.1090 82.1780 1.3085 1.3974 89.1090 82.1780 1.3085 1.3974 TS321 2
3 TS419 89.1090 82.1780 1.3085 1.3974 89.1090 82.1780 1.3085 1.3974 TS419 3
4 TS461 86.6340 69.4720 1.1285 0.6179 86.6340 81.6010 1.1285 1.3620 TS461 4
5 TS424 86.3860 80.9410 1.1105 1.3215 86.3860 80.9410 1.1105 1.3215 TS424 5
6 TS016 86.1390 84.1580 1.0926 1.5189 86.1390 84.8180 1.0926 1.5593 TS016 6
7 TS096 86.1390 83.1680 1.0926 1.4581 86.1390 83.1680 1.0926 1.4581 TS096 7
8 TS172 85.8910 75.1650 1.0745 0.9672 88.8610 84.5710 1.2905 1.5442 TS172 8
9 TS400 85.1490 81.5180 1.0206 1.3569 86.6340 83.6630 1.1285 1.4885 TS400 9
10 TS490 84.9010 80.6110 1.0025 1.3013 85.1490 80.6110 1.0206 1.3013 TS490 10
11 TS361 84.9010 80.2810 1.0025 1.2810 85.6440 81.6830 1.0566 1.3670 TS361 11
12 TS418 84.4060 80.1160 0.9665 1.2709 84.4060 80.1160 0.9665 1.2709 TS418 12
13 TS386 84.4060 79.7850 0.9665 1.2506 84.6530 79.7850 0.9845 1.2506 TS386 13
14 TS094 84.4060 74.1750 0.9665 0.9064 84.4060 76.8980 0.9665 1.0735 TS094 14
15 TS365 84.1580 79.0430 0.9485 1.2051 84.1580 79.0430 0.9485 1.2051 TS365 15
16 TS300 84.1580 77.8880 0.9485 1.1342 89.1090 82.8380 1.3085 1.4379 TS300 16
17 TS457 84.1580 77.8880 0.9485 1.1342 85.1490 82.8380 1.0206 1.4379 TS457 17
18 TS033 83.9110 80.9410 0.9306 1.3215 84.4060 80.9410 0.9665 1.3215 TS033 18
19 TS402 83.9110 79.6200 0.9306 1.2405 87.1290 82.7560 1.1645 1.4328 TS402 19
20 TS240 83.6630 78.0530 0.9125 1.1443 83.6630 78.0530 0.9125 1.1443 TS240 20
21 TS428 83.6630 78.0530 0.9125 1.1443 84.4060 78.0530 0.9665 1.1443 TS428 21
22 TS360 83.4160 80.4460 0.8946 1.2911 83.4160 80.4460 0.8946 1.2911 TS360 22
23 TS470 83.1680 76.8980 0.8765 1.0735 84.4060 76.8980 0.9665 1.0735 TS470 23
24 TS236 83.1680 76.8980 0.8765 1.0735 83.6630 80.3630 0.9125 1.2860 TS236 24
25 TS102 83.1680 73.2670 0.8765 0.8507 83.6630 77.3930 0.9125 1.1039 TS102 25
26 TS452 83.1680 72.9370 0.8765 0.8305 84.4060 74.1750 0.9665 0.9064 TS452 26
27 TS399 83.1680 72.9370 0.8765 0.8305 83.1680 76.8980 0.8765 1.0735 TS399 27
28 TS110 83.1680 72.9370 0.8765 0.8305 83.1680 72.9370 0.8765 0.8305 TS110 28
29 TS104 82.9210 78.3000 0.8586 1.1595 82.9210 78.3000 0.8586 1.1595 TS104 29
30 TS113 82.9210 77.9700 0.8586 1.1392 83.6630 77.9700 0.9125 1.1392 TS113 30
31 TS407 82.9210 76.6500 0.8586 1.0583 84.4060 78.1350 0.9665 1.1494 TS407 31
32 TS242 82.9210 72.6900 0.8586 0.8153 83.1680 72.9370 0.8765 0.8305 TS242 32
33 TS380 82.6730 72.7720 0.8405 0.8204 83.9110 80.9410 0.9306 1.3215 TS380 33
34 TS297 82.4260 80.1160 0.8226 1.2709 87.6240 80.1980 1.2005 1.2759 TS297 34
35 TS114 82.4260 76.4850 0.8226 1.0481 83.1680 76.8980 0.8765 1.0735 TS114 35
36 TS253 82.1780 78.8780 0.8045 1.1949 84.4060 78.8780 0.9665 1.1949 TS253 36
37 TS423 82.1780 75.9080 0.8045 1.0128 82.1780 75.9080 0.8045 1.0128 TS423 37
38 TS037 81.9310 71.7000 0.7866 0.7546 83.4160 81.4360 0.8946 1.3519 TS037 38
39 TS276 81.6830 74.4220 0.7685 0.9216 81.6830 74.4220 0.7685 0.9216 TS276 39
40 TS299 81.4360 76.8150 0.7506 1.0684 81.4360 76.8150 0.7506 1.0684 TS299 40
41 TS449 81.4360 64.9340 0.7506 0.3395 81.4360 64.9340 0.7506 0.3395 TS449 41
42 TS453 81.4360 64.9340 0.7506 0.3395 81.4360 64.9340 0.7506 0.3395 TS453 42
43 TS346 81.4360 64.9340 0.7506 0.3395 81.4360 64.9340 0.7506 0.3395 TS346 43
44 TS215 80.9410 72.5250 0.7146 0.8052 80.9410 72.5250 0.7146 0.8052 TS215 44
45 TS002 80.9410 72.5250 0.7146 0.8052 80.9410 72.5250 0.7146 0.8052 TS002 45
46 TS088 80.9410 71.3700 0.7146 0.7344 82.6730 76.4030 0.8405 1.0431 TS088 46
47 TS208 79.9500 72.1950 0.6425 0.7850 80.1980 72.4420 0.6606 0.8001 TS208 47
48 TS458 79.7030 73.7620 0.6246 0.8811 84.6530 78.2180 0.9845 1.1545 TS458 48
49 TS103 79.7030 73.5970 0.6246 0.8710 79.7030 73.5970 0.6246 0.8710 TS103 49
50 TS077 79.7030 67.3270 0.6246 0.4863 79.7030 72.1950 0.6246 0.7850 TS077 50
51 TS286 79.7030 67.3270 0.6246 0.4863 79.7030 72.1950 0.6246 0.7850 TS286 51
52 TS192 78.9600 71.0400 0.5706 0.7141 78.9600 71.0400 0.5706 0.7141 TS192 52
53 TS429 77.9700 68.8120 0.4986 0.5774 77.9700 69.0590 0.4986 0.5926 TS429 53
54 TS382 77.7230 72.4420 0.4806 0.8001 85.1490 79.2080 1.0206 1.2152 TS382 54
55 TS129 77.7230 62.7060 0.4806 0.2029 77.7230 63.4490 0.4806 0.2484 TS129 55
56 TS166 77.2280 66.3370 0.4446 0.4256 77.2280 67.6570 0.4446 0.5066 TS166 56
57 TS174 76.7330 61.1390 0.4086 0.1067 76.7330 61.1390 0.4086 0.1067 TS174 57
58 TS119 76.4850 68.8940 0.3906 0.5825 77.2280 69.3890 0.4446 0.6128 TS119 58
59 TS481 76.2380 68.8120 0.3726 0.5774 76.9800 69.8840 0.4266 0.6432 TS481 59
60 TS273 75.9900 65.5940 0.3546 0.3800 75.9900 65.5940 0.3546 0.3800 TS273 60
61 TS080 75.7430 67.4920 0.3366 0.4965 80.9410 72.5250 0.7146 0.8052 TS080 61
62 TS207 75.4950 68.5640 0.3186 0.5622 77.4750 71.0400 0.4626 0.7141 TS207 62
63 TS199 75.0000 66.0890 0.2826 0.4104 75.0000 66.0890 0.2826 0.4104 TS199 63
64 TS218 75.0000 60.3140 0.2826 0.0561 75.0000 63.1190 0.2826 0.2282 TS218 64
65 TS028 74.7520 66.5020 0.2646 0.4357 74.7520 66.5020 0.2646 0.4357 TS028 65
66 TS165 74.5050 68.5640 0.2466 0.5622 75.4950 68.8940 0.3186 0.5825 TS165 66
67 TS056 74.5050 65.4290 0.2466 0.3699 74.5050 65.4290 0.2466 0.3699 TS056 67
68 TS395 74.0100 69.0590 0.2106 0.5926 81.4360 77.4750 0.7506 1.1089 TS395 68
69 TS311 74.0100 64.6040 0.2106 0.3193 74.0100 64.6040 0.2106 0.3193 TS311 69
70 TS035 73.7620 54.7850 0.1926 -0.2830 73.7620 54.7850 0.1926 -0.2830 TS035 70
71 TS408 73.7620 54.4550 0.1926 -0.3033 82.6730 77.0630 0.8405 1.0836 TS408 71
72 TS295 73.5150 71.3700 0.1746 0.7344 89.1090 82.3430 1.3085 1.4075 TS295 72
73 TS319 73.5150 62.7890 0.1746 0.2080 75.9900 65.5940 0.3546 0.3800 TS319 73
74 TS026 73.2670 66.1720 0.1566 0.4155 73.2670 66.1720 0.1566 0.4155 TS026 74
75 TS301 73.2670 63.3660 0.1566 0.2434 73.2670 64.8510 0.1566 0.3345 TS301 75
76 TS436 73.2670 60.1490 0.1566 0.0460 73.2670 60.1490 0.1566 0.0460 TS436 76
77 TS149 73.0200 65.4290 0.1386 0.3699 73.0200 65.4290 0.1386 0.3699 TS149 77
78 TS328 73.0200 65.2640 0.1386 0.3598 73.0200 65.2640 0.1386 0.3598 TS328 78
79 TS083 73.0200 62.7890 0.1386 0.2080 77.2280 68.8120 0.4446 0.5774 TS083 79
80 TS186 73.0200 61.3040 0.1386 0.1169 73.7620 63.9440 0.1926 0.2788 TS186 80
81 TS314 73.0200 47.1120 0.1386 -0.7538 73.0200 47.1120 0.1386 -0.7538 TS314 81
82 TS275 72.7720 64.1910 0.1206 0.2940 74.7520 66.8320 0.2646 0.4560 TS275 82
83 TS409 72.7720 63.5310 0.1206 0.2535 73.5150 66.0890 0.1746 0.4104 TS409 83
84 TS214 72.7720 60.9740 0.1206 0.0966 73.2670 62.8710 0.1566 0.2130 TS214 84
85 TS302 72.7720 59.4060 0.1206 0.0004 72.7720 59.4060 0.1206 0.0004 TS302 85
86 TS142 72.7720 59.4060 0.1206 0.0004 72.7720 59.4060 0.1206 0.0004 TS142 86
87 TS220 72.7720 59.4060 0.1206 0.0004 72.7720 59.4060 0.1206 0.0004 TS220 87
88 TS447 72.7720 59.4060 0.1206 0.0004 72.7720 59.4060 0.1206 0.0004 TS447 88
89 TS366 72.5250 58.6630 0.1026 -0.0452 73.5150 58.6630 0.1746 -0.0452 TS366 89
90 TS063 72.5250 58.6630 0.1026 -0.0452 72.5250 60.7260 0.1026 0.0814 TS063 90
91 TS345 72.2770 57.7560 0.0846 -0.1008 74.2570 66.6670 0.2286 0.4459 TS345 91
92 TS245 72.0300 62.1290 0.0667 0.1675 72.0300 62.1290 0.0667 0.1675 TS245 92
93 TS147 71.7820 63.6960 0.0486 0.2636 71.7820 63.6960 0.0486 0.2636 TS147 93
94 TS391 71.5350 65.5940 0.0307 0.3800 71.5350 65.5940 0.0307 0.3800 TS391 94
95 TS055 71.5350 62.2940 0.0307 0.1776 83.1680 78.0530 0.8765 1.1443 TS055 95
96 TS173 71.0400 60.9740 -0.0053 0.0966 73.5150 62.7890 0.1746 0.2080 TS173 96
97 TS477 71.0400 57.0130 -0.0053 -0.1464 81.6830 74.4220 0.7685 0.9216 TS477 97
98 TS435 71.0400 57.0130 -0.0053 -0.1464 71.0400 61.9640 -0.0053 0.1574 TS435 98
99 TS353 70.7920 67.6570 -0.0234 0.5066 72.7720 70.4620 0.1206 0.6787 TS353 99
100 TS324 70.7920 57.2610 -0.0234 -0.1312 72.2770 62.0460 0.0846 0.1624 TS324 100
101 TS307 70.7920 54.6200 -0.0234 -0.2932 75.2480 67.4920 0.3006 0.4965 TS307 101
102 TS347 70.7920 53.7950 -0.0234 -0.3438 70.7920 53.7950 -0.0234 -0.3438 TS347 102
103 TS358 70.7920 53.7950 -0.0234 -0.3438 73.0200 53.7950 0.1386 -0.3438 TS358 103
104 TS213 70.5450 61.1390 -0.0413 0.1067 74.5050 65.2640 0.2466 0.3598 TS213 104
105 TS450 70.2970 64.3560 -0.0594 0.3041 70.2970 64.3560 -0.0594 0.3041 TS450 105
106 TS291 70.2970 58.0860 -0.0594 -0.0805 70.2970 58.0860 -0.0594 -0.0805 TS291 106
107 TS476 70.0500 54.0430 -0.0773 -0.3286 70.0500 54.0430 -0.0773 -0.3286 TS476 107
108 TS420 70.0500 54.0430 -0.0773 -0.3286 70.0500 54.0430 -0.0773 -0.3286 TS420 108
109 TS171 70.0500 54.0430 -0.0773 -0.3286 70.0500 54.0430 -0.0773 -0.3286 TS171 109
110 TS471 70.0500 54.0430 -0.0773 -0.3286 70.0500 54.0430 -0.0773 -0.3286 TS471 110
111 TS117 70.0500 53.0530 -0.0773 -0.3893 73.5150 54.7030 0.1746 -0.2881 TS117 111
112 TS001 69.8020 59.7360 -0.0953 0.0207 70.7920 59.7360 -0.0234 0.0207 TS001 112
113 TS061 69.5540 59.8180 -0.1134 0.0257 70.0500 60.3960 -0.0773 0.0612 TS061 113
114 TS127 69.3070 54.4550 -0.1313 -0.3033 74.2570 61.1390 0.2286 0.1067 TS127 114
115 TS296 68.8120 62.5410 -0.1673 0.1927 69.5540 62.5410 -0.1134 0.1927 TS296 115
116 AL396 68.5640 59.8180 -0.1854 0.0257 70.2970 59.8180 -0.0594 0.0257 AL396 116
117 TS228 67.0790 58.1680 -0.2933 -0.0755 76.2380 69.1420 0.3726 0.5977 TS228 117
118 TS206 64.6040 54.7030 -0.4733 -0.2881 64.6040 54.7030 -0.4733 -0.2881 TS206 118
119 TS047 63.3660 40.0990 -0.5633 -1.1840 63.3660 40.0990 -0.5633 -1.1840 TS047 119
120 AL285 63.1190 42.0790 -0.5813 -1.0625 63.1190 54.2080 -0.5813 -0.3184 AL285 120
121 TS304 62.3760 52.6400 -0.6353 -0.4146 68.0690 59.4880 -0.2214 0.0055 TS304 121
122 TS244 61.3860 56.7660 -0.7073 -0.1615 67.0790 60.9740 -0.2933 0.0966 TS244 122
123 TS170 60.8910 41.5840 -0.7433 -1.0929 76.9800 68.3990 0.4266 0.5521 TS170 123
124 TS403 58.4160 41.7490 -0.9233 -1.0827 58.4160 41.7490 -0.9233 -1.0827 TS403 124
125 TS018 57.6730 53.7130 -0.9773 -0.3488 74.5050 67.4920 0.2466 0.4965 TS018 125
126 TS250 52.9700 47.8550 -1.3192 -0.7082 66.8320 48.8450 -0.3113 -0.6474 TS250 126
127 TS153 51.4850 43.4820 -1.4272 -0.9764 51.4850 43.4820 -1.4272 -0.9764 TS153 127
128 TS316 48.7620 39.1910 -1.6252 -1.2397 48.7620 39.1910 -1.6252 -1.2397 TS316 128
129 TS278 46.7820 36.0560 -1.7692 -1.4320 46.7820 36.0560 -1.7692 -1.4320 TS278 129
130 TS084 46.5350 41.4190 -1.7872 -1.1030 46.5350 41.4190 -1.7872 -1.1030 TS084 130
131 TS355 46.5350 38.9440 -1.7872 -1.2548 46.5350 38.9440 -1.7872 -1.2548 TS355 131
132 TS264 43.8120 33.4160 -1.9852 -1.5939 49.2570 36.7160 -1.5892 -1.3915 TS264 132
133 TS014 41.0890 29.5380 -2.1831 -1.8318 41.0890 36.7160 -2.1831 -1.3915 TS014 133
134 TS042 35.6440 30.9410 -2.5791 -1.7458 46.2870 38.2010 -1.8052 -1.3004 TS042 134
135 TS248 34.9010 31.7660 -2.6331 -1.6952 34.9010 33.7460 -2.6331 -1.5737 TS248 135
136 TS039 33.6630 30.6930 -2.7231 -1.7610 35.6440 34.6530 -2.5791 -1.5181 TS039 136
137 TS029 31.6830 28.0530 -2.8671 -1.9229 51.9800 42.9040 -1.3912 -1.0119 TS029 137
138 TS020 31.4360 28.4650 -2.8850 -1.8977 35.8910 33.9110 -2.5611 -1.5636 TS020 138
139 TS200 29.2080 22.8550 -3.0470 -2.2418 46.7820 33.5810 -1.7692 -1.5838 TS200 139
140 TS350 29.2080 22.7720 -3.0470 -2.2469 46.2870 34.6530 -1.8052 -1.5181 TS350 140
141 TS373 28.2180 22.1120 -3.1190 -2.2874 30.9410 26.4850 -2.9210 -2.0191 TS373 141
142 TS257 27.7230 25.4130 -3.1550 -2.0849 32.6730 29.1250 -2.7951 -1.8572 TS257 142
143 TS182 25.4950 23.5150 -3.3170 -2.2013 31.9310 25.1650 -2.8490 -2.1001 TS182 143
144 RANDOM 25.43 21.68 -3.3218 -2.3139 25.43 21.68 -3.3218 -2.3139 RANDOM 144
145 TS229 23.5150 19.0590 -3.4610 -2.4747 32.1780 25.4950 -2.8311 -2.0799 TS229 145
146 TS336 23.2670 21.6170 -3.4790 -2.3178 27.7230 27.7230 -3.1550 -1.9432 TS336 146
147 TS152 23.2670 20.7920 -3.4790 -2.3684 30.4460 28.0530 -2.9570 -1.9229 TS152 147
148 TS289 20.7920 17.9870 -3.6590 -2.5404 20.7920 17.9870 -3.6590 -2.5404 TS289 148
149 TS154 20.2970 15.8420 -3.6950 -2.6720 20.2970 15.8420 -3.6950 -2.6720 TS154 149
150 TS333 13.8610 11.5510 -4.1630 -2.9353 26.7330 26.2380 -3.2270 -2.0343 TS333 150
151 TS009             -3.3218 -2.3139             -3.3218 -2.3139 TS009 151
152 TS044             -3.3218 -2.3139             -3.3218 -2.3139 TS044 152
153 TS045             -3.3218 -2.3139             -3.3218 -2.3139 TS045 153
154 TS060             -3.3218 -2.3139             -3.3218 -2.3139 TS060 154
155 TS074             -3.3218 -2.3139             -3.3218 -2.3139 TS074 155
156 TS075             -3.3218 -2.3139             -3.3218 -2.3139 TS075 156
157 TS086             -3.3218 -2.3139             -3.3218 -2.3139 TS086 157
158 TS105             -3.3218 -2.3139             -3.3218 -2.3139 TS105 158
159 TS140             -3.3218 -2.3139             -3.3218 -2.3139 TS140 159
160 TS150             -3.3218 -2.3139             -3.3218 -2.3139 TS150 160
161 TS160             -3.3218 -2.3139             -3.3218 -2.3139 TS160 161
162 TS178             -3.3218 -2.3139             -3.3218 -2.3139 TS178 162
163 TS180             -3.3218 -2.3139             -3.3218 -2.3139 TS180 163
164 TS184             -3.3218 -2.3139             -3.3218 -2.3139 TS184 164
165 TS189             -3.3218 -2.3139             -3.3218 -2.3139 TS189 165
166 TS254             -3.3218 -2.3139             -3.3218 -2.3139 TS254 166
167 TS261             -3.3218 -2.3139             -3.3218 -2.3139 TS261 167
168 TS263             -3.3218 -2.3139             -3.3218 -2.3139 TS263 168
169 TS269             -3.3218 -2.3139             -3.3218 -2.3139 TS269 169
170 TS279             -3.3218 -2.3139             -3.3218 -2.3139 TS279 170
171 TS282             -3.3218 -2.3139             -3.3218 -2.3139 TS282 171
172 TS322             -3.3218 -2.3139             -3.3218 -2.3139 TS322 172
173 TS330             -3.3218 -2.3139             -3.3218 -2.3139 TS330 173
174 TS331             -3.3218 -2.3139             -3.3218 -2.3139 TS331 174
175 TS362             -3.3218 -2.3139             -3.3218 -2.3139 TS362 175
176 TS433             -3.3218 -2.3139             -3.3218 -2.3139 TS433 176
177 TS439             -3.3218 -2.3139             -3.3218 -2.3139 TS439 177
178 TS444             -3.3218 -2.3139             -3.3218 -2.3139 TS444 178