T0539

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0539

HR4710B from unknown species

Target type: Server only

Target sequence:

>T0539 HR4710B, unknown species, 81 residues
MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l0b

Jmol of T0539 structure : 2l0b

PyMOL of T0539

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0539A1-913-81

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

RING finger domain, C3HC4, zinc-finger motif inside.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1x4j_A | PyMOL of 1x4j A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

zf-C3HC4: Zinc finger, C3HC4 type (RING finger) (PF00097).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0539 T0539 T0539 T0539
First score First Z-score Best score Best Z-score
1 TS080 79.1140 73.2070 1.6861 1.6706 79.1140 73.2070 1.6861 1.6706 TS080 1
2 TS449 72.1520 69.6200 0.9884 1.3102 72.1520 69.6200 0.9884 1.3102 TS449 2
3 TS453 72.1520 69.6200 0.9884 1.3102 72.1520 69.6200 0.9884 1.3102 TS453 3
4 TS346 72.1520 69.6200 0.9884 1.3102 72.1520 69.6200 0.9884 1.3102 TS346 4
5 TS407 72.1520 62.8690 0.9884 0.6320 72.1520 62.8690 0.9884 0.6320 TS407 5
6 TS490 71.5190 62.8690 0.9249 0.6320 71.5190 62.9750 0.9249 0.6426 TS490 6
7 TS094 71.2030 68.6710 0.8932 1.2149 72.1520 69.6200 0.9884 1.3102 TS094 7
8 TS314 71.2030 67.6160 0.8932 1.1089 71.2030 67.6160 0.8932 1.1089 TS314 8
9 TS088 71.2030 65.0840 0.8932 0.8545 71.8350 66.5610 0.9566 1.0029 TS088 9
10 TS114 71.2030 61.0760 0.8932 0.4518 71.2030 68.0380 0.8932 1.1513 TS114 10
11 TS476 71.2030 60.4430 0.8932 0.3882 71.2030 60.4430 0.8932 0.3882 TS476 11
12 TS420 71.2030 60.4430 0.8932 0.3882 71.2030 60.4430 0.8932 0.3882 TS420 12
13 TS471 71.2030 60.4430 0.8932 0.3882 71.2030 60.4430 0.8932 0.3882 TS471 13
14 TS236 71.2030 59.5990 0.8932 0.3034 71.2030 68.6710 0.8932 1.2149 TS236 14
15 TS481 70.8860 67.5110 0.8615 1.0983 71.2030 67.5110 0.8932 1.0983 TS481 15
16 TS037 70.8860 66.6670 0.8615 1.0135 70.8860 66.8780 0.8615 1.0347 TS037 16
17 TS380 70.8860 66.4560 0.8615 0.9923 71.2030 67.8270 0.8932 1.1301 TS380 17
18 TS470 70.8860 66.4560 0.8615 0.9923 71.2030 67.5110 0.8932 1.0983 TS470 18
19 TS077 70.8860 61.3920 0.8615 0.4836 70.8860 63.6080 0.8615 0.7062 TS077 19
20 TS435 70.8860 59.7050 0.8615 0.3141 70.8860 59.7050 0.8615 0.3141 TS435 20
21 TS361 70.5700 67.6160 0.8298 1.1089 71.2030 68.4600 0.8932 1.1937 TS361 21
22 TS304 70.5700 66.5610 0.8298 1.0029 70.5700 66.5610 0.8298 1.0029 TS304 22
23 TS002 70.5700 66.5610 0.8298 1.0029 70.5700 66.5610 0.8298 1.0029 TS002 23
24 TS102 70.5700 64.4510 0.8298 0.7909 71.2030 65.6120 0.8932 0.9075 TS102 24
25 TS302 70.5700 64.0300 0.8298 0.7486 70.5700 64.0300 0.8298 0.7486 TS302 25
26 TS142 70.5700 64.0300 0.8298 0.7486 70.5700 64.0300 0.8298 0.7486 TS142 26
27 TS035 70.5700 62.3420 0.8298 0.5790 70.5700 62.3420 0.8298 0.5790 TS035 27
28 TS319 70.2530 66.6670 0.7980 1.0135 70.2530 66.6670 0.7980 1.0135 TS319 28
29 TS171 70.2530 66.6670 0.7980 1.0135 70.2530 66.6670 0.7980 1.0135 TS171 29
30 TS056 70.2530 66.6670 0.7980 1.0135 70.2530 66.6670 0.7980 1.0135 TS056 30
31 TS273 70.2530 66.6670 0.7980 1.0135 70.2530 66.6670 0.7980 1.0135 TS273 31
32 TS409 70.2530 64.9790 0.7980 0.8439 70.2530 64.9790 0.7980 0.8439 TS409 32
33 TS428 70.2530 61.1810 0.7980 0.4624 70.8860 67.3000 0.8615 1.0771 TS428 33
34 TS275 69.9370 66.9830 0.7664 1.0453 70.8860 66.9830 0.8615 1.0453 TS275 34
35 TS276 69.9370 64.6620 0.7664 0.8121 69.9370 67.6160 0.7664 1.1089 TS276 35
36 TS286 69.9370 64.6620 0.7664 0.8121 69.9370 67.6160 0.7664 1.1089 TS286 36
37 TS119 69.9370 64.6620 0.7664 0.8121 70.8860 67.5110 0.8615 1.0983 TS119 37
38 TS366 69.9370 62.1310 0.7664 0.5578 69.9370 62.1310 0.7664 0.5578 TS366 38
39 TS063 69.9370 62.1310 0.7664 0.5578 69.9370 62.1310 0.7664 0.5578 TS063 39
40 TS001 69.3040 66.5610 0.7029 1.0029 70.2530 66.6670 0.7980 1.0135 TS001 40
41 TS457 69.3040 65.7170 0.7029 0.9181 69.6200 66.8780 0.7346 1.0347 TS457 41
42 TS127 69.3040 64.8730 0.7029 0.8333 69.3040 64.8730 0.7029 0.8333 TS127 42
43 TS213 69.3040 64.8730 0.7029 0.8333 69.9370 64.8730 0.7664 0.8333 TS213 43
44 TS215 69.3040 62.7640 0.7029 0.6214 69.3040 62.7640 0.7029 0.6214 TS215 44
45 TS429 69.3040 62.3420 0.7029 0.5790 69.3040 64.7680 0.7029 0.8227 TS429 45
46 TS452 68.9870 62.4470 0.6712 0.5896 69.3040 63.1860 0.7029 0.6638 TS452 46
47 TS345 68.6710 62.9750 0.6395 0.6426 68.9870 62.9750 0.6712 0.6426 TS345 47
48 TS113 68.6710 58.7550 0.6395 0.2186 71.2030 68.8820 0.8932 1.2361 TS113 48
49 TS395 68.3540 64.5570 0.6077 0.8016 70.8860 64.5570 0.8615 0.8016 TS395 49
50 TS174 68.3540 60.5490 0.6077 0.3989 68.3540 60.5490 0.6077 0.3989 TS174 50
51 TS165 68.3540 56.4350 0.6077 -0.0145 70.5700 66.3500 0.8298 0.9817 TS165 51
52 TS253 67.7220 62.6580 0.5444 0.6108 69.3040 64.1350 0.7029 0.7592 TS253 52
53 TS117 67.4050 61.9200 0.5126 0.5366 72.4680 64.7680 1.0200 0.8227 TS117 53
54 TS214 66.1390 60.4430 0.3857 0.3882 66.1390 60.4430 0.3857 0.3882 TS214 54
55 TS391 65.8230 58.9660 0.3541 0.2398 65.8230 58.9660 0.3541 0.2398 TS391 55
56 TS291 65.5060 59.1770 0.3223 0.2610 70.2530 66.4560 0.7980 0.9923 TS291 56
57 TS248 64.8730 55.8020 0.2588 -0.0781 64.8730 55.8020 0.2588 -0.0781 TS248 57
58 TS208 64.2410 56.4350 0.1955 -0.0145 68.0380 59.7050 0.5760 0.3141 TS208 58
59 TS173 62.9750 57.2780 0.0686 0.0702 70.8860 68.5650 0.8615 1.2042 TS173 59
60 TS028 60.1270 53.5860 -0.2168 -0.3007 69.6200 66.0340 0.7346 0.9499 TS028 60
61 TS018 59.8100 53.9030 -0.2486 -0.2689 59.8100 55.2740 -0.2486 -0.1311 TS018 61
62 TS436 58.5440 54.5360 -0.3755 -0.2053 69.9370 64.0300 0.7664 0.7486 TS436 62
63 TS026 58.5440 53.4810 -0.3755 -0.3113 70.2530 64.1350 0.7980 0.7592 TS026 63
64 TS244 57.5950 53.3760 -0.4706 -0.3218 57.5950 53.3760 -0.4706 -0.3218 TS244 64
65 TS074 57.5950 51.4770 -0.4706 -0.5126 57.5950 51.4770 -0.4706 -0.5126 TS074 65
66 TS419 57.2780 52.0040 -0.5023 -0.4597 58.5440 54.7470 -0.3755 -0.1841 TS419 66
67 TS166 57.2780 52.0040 -0.5023 -0.4597 58.5440 52.6370 -0.3755 -0.3961 TS166 67
68 TS328 56.6460 50.5270 -0.5657 -0.6081 56.6460 50.5270 -0.5657 -0.6081 TS328 68
69 TS047 56.6460 45.5700 -0.5657 -1.1061 56.6460 45.5700 -0.5657 -1.1061 TS047 69
70 TS218 54.7470 52.0040 -0.7560 -0.4597 54.7470 52.0040 -0.7560 -0.4597 TS218 70
71 TS228 54.4300 52.1100 -0.7878 -0.4490 59.4940 53.5860 -0.2802 -0.3007 TS228 71
72 AL396 53.1650 44.3040 -0.9145 -1.2333 53.1650 47.0460 -0.9145 -0.9578 AL396 72
73 TS207 51.5820 46.7300 -1.0732 -0.9896 70.8860 66.0340 0.8615 0.9499 TS207 73
74 TS220 49.6840 44.8310 -1.2634 -1.1803 70.5700 64.0300 0.8298 0.7486 TS220 74
75 TS447 49.6840 44.8310 -1.2634 -1.1803 70.5700 64.0300 0.8298 0.7486 TS447 75
76 TS103 47.4680 40.9280 -1.4855 -1.5725 54.7470 49.4730 -0.7560 -0.7140 TS103 76
77 TS307 46.2030 42.1940 -1.6123 -1.4453 69.6200 64.2410 0.7346 0.7698 TS307 77
78 TS296 45.8860 43.9870 -1.6440 -1.2651 51.5820 50.1050 -1.0732 -0.6505 TS296 78
79 TS321 43.9870 33.8610 -1.8344 -2.2825 57.2780 52.0040 -0.5023 -0.4597 TS321 79
80 AL285 39.2410 38.1860 -2.3100 -1.8480 56.3290 50.6330 -0.5974 -0.5974 AL285 80
81 TS250 39.2410 28.4810 -2.3100 -2.8231 56.9620 51.2660 -0.5340 -0.5338 TS250 81
82 TS055 38.2910 33.4390 -2.4052 -2.3249 71.5190 67.3000 0.9249 1.0771 TS055 82
83 TS289 37.3420 33.3330 -2.5003 -2.3356 37.3420 33.3330 -2.5003 -2.3356 TS289 83
84 TS350 28.7970 25.0000 -3.3567 -3.1728 30.3800 28.0590 -3.1981 -2.8655 TS350 84
85 TS257 28.7970 22.8900 -3.3567 -3.3848 31.0130 27.2150 -3.1346 -2.9503 TS257 85
86 TS355 28.4810 23.8400 -3.3884 -3.2893 28.4810 23.8400 -3.3884 -3.2893 TS355 86
87 TS014 27.8480 25.7380 -3.4518 -3.0986 28.4810 25.7380 -3.3884 -3.0986 TS014 87
88 RANDOM 21.65 17.86 -4.0730 -3.8902 21.65 17.86 -4.0730 -3.8902 RANDOM 88
89 TS229 21.5190 20.0420 -4.0861 -3.6709 21.8350 20.0420 -4.0545 -3.6709 TS229 89
90 TS264 20.8860 19.6200 -4.1496 -3.7133 31.0130 27.6370 -3.1346 -2.9079 TS264 90
91 TS245 19.3040 16.7720 -4.3081 -3.9995 19.3040 16.7720 -4.3081 -3.9995 TS245 91
92 TS129 18.9870 17.9320 -4.3399 -3.8829 22.4680 19.0930 -3.9910 -3.7663 TS129 92
93 TS009             -4.0730 -3.8902             -4.0730 -3.8902 TS009 93
94 TS016             -4.0730 -3.8902             -4.0730 -3.8902 TS016 94
95 TS020             -4.0730 -3.8902             -4.0730 -3.8902 TS020 95
96 TS029             -4.0730 -3.8902             -4.0730 -3.8902 TS029 96
97 TS033             -4.0730 -3.8902             -4.0730 -3.8902 TS033 97
98 TS039             -4.0730 -3.8902             -4.0730 -3.8902 TS039 98
99 TS042             -4.0730 -3.8902             -4.0730 -3.8902 TS042 99
100 TS044             -4.0730 -3.8902             -4.0730 -3.8902 TS044 100
101 TS045             -4.0730 -3.8902             -4.0730 -3.8902 TS045 101
102 TS060             -4.0730 -3.8902             -4.0730 -3.8902 TS060 102
103 TS061             -4.0730 -3.8902             -4.0730 -3.8902 TS061 103
104 TS075             -4.0730 -3.8902             -4.0730 -3.8902 TS075 104
105 TS083             -4.0730 -3.8902             -4.0730 -3.8902 TS083 105
106 TS084             -4.0730 -3.8902             -4.0730 -3.8902 TS084 106
107 TS086             -4.0730 -3.8902             -4.0730 -3.8902 TS086 107
108 TS096             -4.0730 -3.8902             -4.0730 -3.8902 TS096 108
109 TS104             -4.0730 -3.8902             -4.0730 -3.8902 TS104 109
110 TS105             -4.0730 -3.8902             -4.0730 -3.8902 TS105 110
111 TS110             -4.0730 -3.8902             -4.0730 -3.8902 TS110 111
112 TS140             -4.0730 -3.8902             -4.0730 -3.8902 TS140 112
113 TS147             -4.0730 -3.8902             -4.0730 -3.8902 TS147 113
114 TS149             -4.0730 -3.8902             -4.0730 -3.8902 TS149 114
115 TS150             -4.0730 -3.8902             -4.0730 -3.8902 TS150 115
116 TS152             -4.0730 -3.8902             -4.0730 -3.8902 TS152 116
117 TS153             -4.0730 -3.8902             -4.0730 -3.8902 TS153 117
118 TS154             -4.0730 -3.8902             -4.0730 -3.8902 TS154 118
119 TS160             -4.0730 -3.8902             -4.0730 -3.8902 TS160 119
120 TS170             -4.0730 -3.8902             -4.0730 -3.8902 TS170 120
121 TS172             -4.0730 -3.8902             -4.0730 -3.8902 TS172 121
122 TS178             -4.0730 -3.8902             -4.0730 -3.8902 TS178 122
123 TS180             -4.0730 -3.8902             -4.0730 -3.8902 TS180 123
124 TS182             -4.0730 -3.8902             -4.0730 -3.8902 TS182 124
125 TS184             -4.0730 -3.8902             -4.0730 -3.8902 TS184 125
126 TS186             -4.0730 -3.8902             -4.0730 -3.8902 TS186 126
127 TS189             -4.0730 -3.8902             -4.0730 -3.8902 TS189 127
128 TS192             -4.0730 -3.8902             -4.0730 -3.8902 TS192 128
129 TS199             -4.0730 -3.8902             -4.0730 -3.8902 TS199 129
130 TS200             -4.0730 -3.8902             -4.0730 -3.8902 TS200 130
131 TS206             -4.0730 -3.8902             -4.0730 -3.8902 TS206 131
132 TS240             -4.0730 -3.8902             -4.0730 -3.8902 TS240 132
133 TS242             -4.0730 -3.8902             -4.0730 -3.8902 TS242 133
134 TS254             -4.0730 -3.8902             -4.0730 -3.8902 TS254 134
135 TS261             -4.0730 -3.8902             -4.0730 -3.8902 TS261 135
136 TS263             -4.0730 -3.8902             -4.0730 -3.8902 TS263 136
137 TS269             -4.0730 -3.8902             -4.0730 -3.8902 TS269 137
138 TS278             -4.0730 -3.8902             -4.0730 -3.8902 TS278 138
139 TS279             -4.0730 -3.8902             -4.0730 -3.8902 TS279 139
140 TS282             -4.0730 -3.8902             -4.0730 -3.8902 TS282 140
141 TS295             -4.0730 -3.8902             -4.0730 -3.8902 TS295 141
142 TS297             -4.0730 -3.8902             -4.0730 -3.8902 TS297 142
143 TS299             -4.0730 -3.8902             -4.0730 -3.8902 TS299 143
144 TS300             -4.0730 -3.8902             -4.0730 -3.8902 TS300 144
145 TS301             -4.0730 -3.8902             -4.0730 -3.8902 TS301 145
146 TS311             -4.0730 -3.8902             -4.0730 -3.8902 TS311 146
147 TS316             -4.0730 -3.8902             -4.0730 -3.8902 TS316 147
148 TS322             -4.0730 -3.8902             -4.0730 -3.8902 TS322 148
149 TS324             -4.0730 -3.8902             -4.0730 -3.8902 TS324 149
150 TS330             -4.0730 -3.8902             -4.0730 -3.8902 TS330 150
151 TS331             -4.0730 -3.8902             -4.0730 -3.8902 TS331 151
152 TS333             -4.0730 -3.8902             -4.0730 -3.8902 TS333 152
153 TS336             -4.0730 -3.8902             -4.0730 -3.8902 TS336 153
154 TS347             -4.0730 -3.8902             -4.0730 -3.8902 TS347 154
155 TS353             -4.0730 -3.8902             -4.0730 -3.8902 TS353 155
156 TS358             -4.0730 -3.8902             -4.0730 -3.8902 TS358 156
157 TS360             -4.0730 -3.8902             -4.0730 -3.8902 TS360 157
158 TS362             -4.0730 -3.8902             -4.0730 -3.8902 TS362 158
159 TS365             -4.0730 -3.8902             -4.0730 -3.8902 TS365 159
160 TS373             -4.0730 -3.8902             -4.0730 -3.8902 TS373 160
161 TS382             -4.0730 -3.8902             -4.0730 -3.8902 TS382 161
162 TS386             -4.0730 -3.8902             -4.0730 -3.8902 TS386 162
163 TS399             -4.0730 -3.8902             -4.0730 -3.8902 TS399 163
164 TS400             -4.0730 -3.8902             -4.0730 -3.8902 TS400 164
165 TS402             -4.0730 -3.8902             -4.0730 -3.8902 TS402 165
166 TS403             -4.0730 -3.8902             -4.0730 -3.8902 TS403 166
167 TS408             -4.0730 -3.8902             -4.0730 -3.8902 TS408 167
168 TS418             -4.0730 -3.8902             -4.0730 -3.8902 TS418 168
169 TS423             -4.0730 -3.8902             -4.0730 -3.8902 TS423 169
170 TS424             -4.0730 -3.8902             -4.0730 -3.8902 TS424 170
171 TS433             -4.0730 -3.8902             -4.0730 -3.8902 TS433 171
172 TS439             -4.0730 -3.8902             -4.0730 -3.8902 TS439 172
173 TS444             -4.0730 -3.8902             -4.0730 -3.8902 TS444 173
174 TS450             -4.0730 -3.8902             -4.0730 -3.8902 TS450 174
175 TS458             -4.0730 -3.8902             -4.0730 -3.8902 TS458 175
176 TS461             -4.0730 -3.8902             -4.0730 -3.8902 TS461 176
177 TS477             -4.0730 -3.8902             -4.0730 -3.8902 TS477 177
178 TS484             -4.0730 -3.8902             -4.0730 -3.8902 TS484 178