T0585

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
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619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0585

APC62366.1 from Bartonella henselae

Target type: Server only

Target sequence:

>T0585 APC62366.1, Bartonella henselae, 252 residues
SNASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQPL

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3ne8

Jmol of T0585 structure : 3ne8

PyMOL of T0585

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0585A178-4093-234

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Phosphorylase/hydrolase-like, N-acetylmuramoyl-L-alanine amidase-like, Rossmann-like fold, mixed sheet of six strands, order 213645, 4 and 5 antiparrel to the rest.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1jwq_A | PyMOL of 1jwq A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

N-acetylmuramoyl-L-alanine amidase (PF01520).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0585 T0585 T0585 T0585
First score First Z-score Best score Best Z-score
1 TS380 71.3500 62.4260 1.0702 0.8939 71.3500 65.1920 1.0702 1.2056 TS380 1
2 TS418 71.2390 63.2010 1.0581 0.9812 71.2390 63.2010 1.0581 0.9812 TS418 2
3 TS361 70.7960 61.2090 1.0100 0.7567 71.1280 63.6430 1.0461 1.0310 TS361 3
4 TS228 70.1330 67.6990 0.9380 1.4881 70.1330 67.6990 0.9380 1.4881 TS228 4
5 TS002 69.3580 63.3850 0.8539 1.0019 69.3580 63.3850 0.8539 1.0019 TS002 5
6 TS166 68.4730 60.8780 0.7578 0.7194 68.4730 60.8780 0.7578 0.7194 TS166 6
7 TS470 68.3630 60.3240 0.7458 0.6570 71.3500 62.4260 1.0702 0.8939 TS470 7
8 TS236 68.3630 60.3240 0.7458 0.6570 68.4730 61.2460 0.7578 0.7609 TS236 8
9 TS114 68.3630 60.3240 0.7458 0.6570 68.4730 61.2460 0.7578 0.7609 TS114 9
10 TS094 68.3630 59.0710 0.7458 0.5158 68.3630 61.9840 0.7458 0.8440 TS094 10
11 TS419 68.3630 59.0710 0.7458 0.5158 70.9070 64.4170 1.0221 1.1182 TS419 11
12 TS428 68.3630 59.0710 0.7458 0.5158 70.9070 64.4170 1.0221 1.1182 TS428 12
13 TS457 68.2520 61.1730 0.7338 0.7527 68.2520 61.8360 0.7338 0.8274 TS457 13
14 TS407 68.2520 59.6240 0.7338 0.5781 68.2520 61.9840 0.7338 0.8440 TS407 14
15 TS253 68.0310 59.8450 0.7098 0.6030 68.0310 60.5460 0.7098 0.6820 TS253 15
16 TS037 67.9200 59.8820 0.6977 0.6072 70.7960 62.7580 1.0100 0.9313 TS037 16
17 TS321 67.9200 59.1450 0.6977 0.5241 67.9200 59.1450 0.6977 0.5241 TS321 17
18 TS113 67.8100 63.1640 0.6858 0.9770 68.2520 63.1640 0.7338 0.9770 TS113 18
19 TS088 67.6990 62.1680 0.6737 0.8648 68.0310 62.1680 0.7098 0.8648 TS088 19
20 TS452 67.5880 63.0160 0.6617 0.9604 67.9200 63.0900 0.6977 0.9687 TS452 20
21 TS103 67.3670 60.0660 0.6377 0.6279 67.3670 60.0660 0.6377 0.6279 TS103 21
22 TS174 67.3670 59.1080 0.6377 0.5199 67.3670 59.1080 0.6377 0.5199 TS174 22
23 TS173 67.1460 60.9510 0.6137 0.7276 67.1460 60.9510 0.6137 0.7276 TS173 23
24 TS366 66.9250 62.2050 0.5897 0.8690 66.9250 63.0160 0.5897 0.9604 TS366 24
25 TS429 66.9250 59.3290 0.5897 0.5448 67.1460 59.3290 0.6137 0.5448 TS429 25
26 TS104 66.9250 59.3290 0.5897 0.5448 66.9250 59.3290 0.5897 0.5448 TS104 26
27 TS307 66.8140 60.5460 0.5776 0.6820 67.1460 60.5460 0.6137 0.6820 TS307 27
28 TS449 66.7040 63.3110 0.5657 0.9936 66.7040 63.3110 0.5657 0.9936 TS449 28
29 TS453 66.7040 63.3110 0.5657 0.9936 66.7040 63.3110 0.5657 0.9936 TS453 29
30 TS346 66.7040 63.3110 0.5657 0.9936 66.7040 63.3110 0.5657 0.9936 TS346 30
31 TS490 66.5930 59.8080 0.5536 0.5988 70.6860 63.2370 0.9981 0.9853 TS490 31
32 TS063 66.5930 58.8500 0.5536 0.4909 66.9250 63.0160 0.5897 0.9604 TS063 32
33 TS215 66.4820 61.9840 0.5416 0.8440 69.3580 63.3850 0.8539 1.0019 TS215 33
34 TS080 66.4820 61.9840 0.5416 0.8440 69.3580 63.3850 0.8539 1.0019 TS080 34
35 TS119 66.4820 61.9840 0.5416 0.8440 69.5800 63.8270 0.8780 1.0517 TS119 35
36 TS304 66.3720 60.1770 0.5297 0.6404 66.3720 60.1770 0.5297 0.6404 TS304 36
37 TS420 66.3720 58.9970 0.5297 0.5074 66.3720 58.9970 0.5297 0.5074 TS420 37
38 TS171 66.3720 58.9970 0.5297 0.5074 66.3720 58.9970 0.5297 0.5074 TS171 38
39 TS471 66.3720 58.9970 0.5297 0.5074 66.3720 58.9970 0.5297 0.5074 TS471 39
40 TS476 66.2610 57.4850 0.5176 0.3370 66.2610 57.4850 0.5176 0.3370 TS476 40
41 TS208 66.0400 61.2460 0.4936 0.7609 67.2570 62.3530 0.6257 0.8856 TS208 41
42 AL396 65.9290 58.0380 0.4816 0.3993 65.9290 58.0380 0.4816 0.3993 AL396 42
43 TS328 65.8190 58.9600 0.4696 0.5033 65.8190 58.9600 0.4696 0.5033 TS328 43
44 TS273 65.7080 56.7850 0.4576 0.2581 65.8190 59.5130 0.4696 0.5656 TS273 44
45 TS001 65.7080 56.7850 0.4576 0.2581 65.8190 59.5130 0.4696 0.5656 TS001 45
46 TS296 65.7080 56.7850 0.4576 0.2581 65.8190 59.5130 0.4696 0.5656 TS296 46
47 TS275 65.5970 59.5130 0.4455 0.5656 65.5970 59.5130 0.4455 0.5656 TS275 47
48 TS127 65.5970 59.4760 0.4455 0.5614 65.5970 59.4760 0.4455 0.5614 TS127 48
49 TS213 65.5970 59.4760 0.4455 0.5614 65.7080 59.4760 0.4576 0.5614 TS213 49
50 TS129 65.4870 59.0710 0.4336 0.5158 66.3720 59.0710 0.5297 0.5158 TS129 50
51 TS395 65.3760 60.5090 0.4215 0.6778 69.3580 65.8920 0.8539 1.2845 TS395 51
52 TS214 65.1550 59.1080 0.3975 0.5199 65.1550 59.1080 0.3975 0.5199 TS214 52
53 TS436 65.1550 53.8720 0.3975 -0.0702 65.1550 56.4530 0.3975 0.2207 TS436 53
54 AL285 64.3810 54.8670 0.3135 0.0420 64.3810 54.8670 0.3135 0.0420 AL285 54
55 TS245 64.0490 56.9320 0.2774 0.2747 64.0490 56.9320 0.2774 0.2747 TS245 55
56 TS056 63.9380 54.8670 0.2654 0.0420 63.9380 58.4070 0.2654 0.4409 TS056 56
57 TS028 63.9380 53.6870 0.2654 -0.0910 63.9380 53.6870 0.2654 -0.0910 TS028 57
58 TS481 63.8270 53.1340 0.2533 -0.1533 63.8270 53.6140 0.2533 -0.0992 TS481 58
59 TS391 63.3850 58.0750 0.2053 0.4035 63.3850 58.0750 0.2053 0.4035 TS391 59
60 TS218 62.8320 58.6280 0.1453 0.4658 63.1640 60.0290 0.1813 0.6237 TS218 60
61 TS319 61.9470 58.4070 0.0492 0.4409 65.8190 59.5130 0.4696 0.5656 TS319 61
62 TS026 61.5040 53.8350 0.0011 -0.0743 61.5040 53.8350 0.0011 -0.0743 TS026 62
63 TS165 61.3940 57.8540 -0.0109 0.3786 65.7080 60.2140 0.4576 0.6446 TS165 63
64 TS244 61.1730 59.9930 -0.0349 0.6197 63.2740 59.9930 0.1933 0.6197 TS244 64
65 TS189 61.1730 58.1490 -0.0349 0.4119 62.8320 58.8500 0.1453 0.4909 TS189 65
66 TS117 60.9510 56.9690 -0.0590 0.2789 60.9510 56.9690 -0.0590 0.2789 TS117 66
67 TS074 60.9510 45.8700 -0.0590 -0.9720 60.9510 45.8700 -0.0590 -0.9720 TS074 67
68 TS345 60.6190 54.2770 -0.0950 -0.0245 61.0620 54.2770 -0.0469 -0.0245 TS345 68
69 TS302 60.3980 55.3100 -0.1190 0.0919 60.3980 55.3100 -0.1190 0.0919 TS302 69
70 TS142 60.3980 55.3100 -0.1190 0.0919 60.3980 55.3100 -0.1190 0.0919 TS142 70
71 TS314 60.3980 54.9410 -0.1190 0.0503 60.3980 54.9410 -0.1190 0.0503 TS314 71
72 TS102 59.2920 51.1800 -0.2391 -0.3735 59.6240 51.1800 -0.2030 -0.3735 TS102 72
73 TS276 58.7390 49.4100 -0.2991 -0.5730 58.7390 49.4100 -0.2991 -0.5730 TS276 73
74 TS077 58.7390 49.4100 -0.2991 -0.5730 58.7390 49.4100 -0.2991 -0.5730 TS077 74
75 TS286 58.7390 49.4100 -0.2991 -0.5730 58.7390 49.4100 -0.2991 -0.5730 TS286 75
76 TS409 57.1900 48.5990 -0.4673 -0.6644 57.1900 48.5990 -0.4673 -0.6644 TS409 76
77 TS291 56.8580 50.3690 -0.5034 -0.4649 58.9600 52.3600 -0.2751 -0.2406 TS291 77
78 TS055 56.3050 51.6590 -0.5634 -0.3196 61.9470 55.5310 0.0492 0.1168 TS055 78
79 TS477 55.9730 47.7880 -0.5995 -0.7558 55.9730 47.7880 -0.5995 -0.7558 TS477 79
80 TS435 55.9730 47.7880 -0.5995 -0.7558 67.2570 57.8170 0.6257 0.3744 TS435 80
81 TS220 55.1990 47.4190 -0.6835 -0.7974 55.1990 47.4190 -0.6835 -0.7974 TS220 81
82 TS447 55.1990 47.4190 -0.6835 -0.7974 55.1990 47.4190 -0.6835 -0.7974 TS447 82
83 TS018 53.5400 44.4690 -0.8636 -1.1298 62.1680 54.6460 0.0732 0.0171 TS018 83
84 TS207 51.3270 43.2150 -1.1039 -1.2712 62.8320 54.6460 0.1453 0.0171 TS207 84
85 TS047 51.3270 41.4450 -1.1039 -1.4706 51.3270 41.4450 -1.1039 -1.4706 TS047 85
86 TS250 47.3450 37.8320 -1.5363 -1.8778 67.0350 60.7670 0.6016 0.7069 TS250 86
87 TS248 37.8320 36.5040 -2.5692 -2.0275 37.8320 36.5040 -2.5692 -2.0275 TS248 87
88 TS355 17.5880 12.6110 -4.7673 -4.7202 18.5840 16.0030 -4.6591 -4.3379 TS355 88
89 TS264 17.1460 16.0400 -4.8153 -4.3337 17.1460 16.0400 -4.8153 -4.3337 TS264 89
90 TS350 16.9250 13.0900 -4.8393 -4.6662 16.9250 14.2330 -4.8393 -4.5374 TS350 90
91 TS014 16.7040 12.2050 -4.8633 -4.7659 24.7790 22.0500 -3.9865 -3.6564 TS014 91
92 TS257 15.5970 13.5320 -4.9835 -4.6164 16.2610 15.1920 -4.9114 -4.4293 TS257 92
93 RANDOM 13.38 11.67 -5.2242 -4.8262 13.38 11.67 -5.2242 -4.8262 RANDOM 93
94 TS229 12.6110 10.4720 -5.3077 -4.9612 13.6060 12.5740 -5.1996 -4.7243 TS229 94
95 TS289 10.5090 8.3700 -5.5359 -5.1981 10.5090 8.3700 -5.5359 -5.1981 TS289 95
96 TS009             -5.2242 -4.8262             -5.2242 -4.8262 TS009 96
97 TS016             -5.2242 -4.8262             -5.2242 -4.8262 TS016 97
98 TS020             -5.2242 -4.8262             -5.2242 -4.8262 TS020 98
99 TS029             -5.2242 -4.8262             -5.2242 -4.8262 TS029 99
100 TS033             -5.2242 -4.8262             -5.2242 -4.8262 TS033 100
101 TS035             -5.2242 -4.8262             -5.2242 -4.8262 TS035 101
102 TS039             -5.2242 -4.8262             -5.2242 -4.8262 TS039 102
103 TS042             -5.2242 -4.8262             -5.2242 -4.8262 TS042 103
104 TS044             -5.2242 -4.8262             -5.2242 -4.8262 TS044 104
105 TS045             -5.2242 -4.8262             -5.2242 -4.8262 TS045 105
106 TS060             -5.2242 -4.8262             -5.2242 -4.8262 TS060 106
107 TS061             -5.2242 -4.8262             -5.2242 -4.8262 TS061 107
108 TS075             -5.2242 -4.8262             -5.2242 -4.8262 TS075 108
109 TS083             -5.2242 -4.8262             -5.2242 -4.8262 TS083 109
110 TS084             -5.2242 -4.8262             -5.2242 -4.8262 TS084 110
111 TS086             -5.2242 -4.8262             -5.2242 -4.8262 TS086 111
112 TS096             -5.2242 -4.8262             -5.2242 -4.8262 TS096 112
113 TS105             -5.2242 -4.8262             -5.2242 -4.8262 TS105 113
114 TS110             -5.2242 -4.8262             -5.2242 -4.8262 TS110 114
115 TS140             -5.2242 -4.8262             -5.2242 -4.8262 TS140 115
116 TS147             -5.2242 -4.8262             -5.2242 -4.8262 TS147 116
117 TS149             -5.2242 -4.8262             -5.2242 -4.8262 TS149 117
118 TS150             -5.2242 -4.8262             -5.2242 -4.8262 TS150 118
119 TS152             -5.2242 -4.8262             -5.2242 -4.8262 TS152 119
120 TS153             -5.2242 -4.8262             -5.2242 -4.8262 TS153 120
121 TS154             -5.2242 -4.8262             -5.2242 -4.8262 TS154 121
122 TS160             -5.2242 -4.8262             -5.2242 -4.8262 TS160 122
123 TS170             -5.2242 -4.8262             -5.2242 -4.8262 TS170 123
124 TS172             -5.2242 -4.8262             -5.2242 -4.8262 TS172 124
125 TS178             -5.2242 -4.8262             -5.2242 -4.8262 TS178 125
126 TS180             -5.2242 -4.8262             -5.2242 -4.8262 TS180 126
127 TS182             -5.2242 -4.8262             -5.2242 -4.8262 TS182 127
128 TS184             -5.2242 -4.8262             -5.2242 -4.8262 TS184 128
129 TS186             -5.2242 -4.8262             -5.2242 -4.8262 TS186 129
130 TS192             -5.2242 -4.8262             -5.2242 -4.8262 TS192 130
131 TS199             -5.2242 -4.8262             -5.2242 -4.8262 TS199 131
132 TS200             -5.2242 -4.8262             -5.2242 -4.8262 TS200 132
133 TS206             -5.2242 -4.8262             -5.2242 -4.8262 TS206 133
134 TS240             -5.2242 -4.8262             -5.2242 -4.8262 TS240 134
135 TS242             -5.2242 -4.8262             -5.2242 -4.8262 TS242 135
136 TS254             -5.2242 -4.8262             -5.2242 -4.8262 TS254 136
137 TS261             -5.2242 -4.8262             -5.2242 -4.8262 TS261 137
138 TS263             -5.2242 -4.8262             -5.2242 -4.8262 TS263 138
139 TS269             -5.2242 -4.8262             -5.2242 -4.8262 TS269 139
140 TS278             -5.2242 -4.8262             -5.2242 -4.8262 TS278 140
141 TS279             -5.2242 -4.8262             -5.2242 -4.8262 TS279 141
142 TS282             -5.2242 -4.8262             -5.2242 -4.8262 TS282 142
143 TS295             -5.2242 -4.8262             -5.2242 -4.8262 TS295 143
144 TS297             -5.2242 -4.8262             -5.2242 -4.8262 TS297 144
145 TS299             -5.2242 -4.8262             -5.2242 -4.8262 TS299 145
146 TS300             -5.2242 -4.8262             -5.2242 -4.8262 TS300 146
147 TS301             -5.2242 -4.8262             -5.2242 -4.8262 TS301 147
148 TS311             -5.2242 -4.8262             -5.2242 -4.8262 TS311 148
149 TS316             -5.2242 -4.8262             -5.2242 -4.8262 TS316 149
150 TS322             -5.2242 -4.8262             -5.2242 -4.8262 TS322 150
151 TS324             -5.2242 -4.8262             -5.2242 -4.8262 TS324 151
152 TS330             -5.2242 -4.8262             -5.2242 -4.8262 TS330 152
153 TS331             -5.2242 -4.8262             -5.2242 -4.8262 TS331 153
154 TS333             -5.2242 -4.8262             -5.2242 -4.8262 TS333 154
155 TS336             -5.2242 -4.8262             -5.2242 -4.8262 TS336 155
156 TS347             -5.2242 -4.8262             -5.2242 -4.8262 TS347 156
157 TS353             -5.2242 -4.8262             -5.2242 -4.8262 TS353 157
158 TS358             -5.2242 -4.8262             -5.2242 -4.8262 TS358 158
159 TS360             -5.2242 -4.8262             -5.2242 -4.8262 TS360 159
160 TS362             -5.2242 -4.8262             -5.2242 -4.8262 TS362 160
161 TS365             -5.2242 -4.8262             -5.2242 -4.8262 TS365 161
162 TS373             -5.2242 -4.8262             -5.2242 -4.8262 TS373 162
163 TS382             -5.2242 -4.8262             -5.2242 -4.8262 TS382 163
164 TS386             -5.2242 -4.8262             -5.2242 -4.8262 TS386 164
165 TS399             -5.2242 -4.8262             -5.2242 -4.8262 TS399 165
166 TS400             -5.2242 -4.8262             -5.2242 -4.8262 TS400 166
167 TS402             -5.2242 -4.8262             -5.2242 -4.8262 TS402 167
168 TS403             -5.2242 -4.8262             -5.2242 -4.8262 TS403 168
169 TS408             -5.2242 -4.8262             -5.2242 -4.8262 TS408 169
170 TS423             -5.2242 -4.8262             -5.2242 -4.8262 TS423 170
171 TS424             -5.2242 -4.8262             -5.2242 -4.8262 TS424 171
172 TS433             -5.2242 -4.8262             -5.2242 -4.8262 TS433 172
173 TS439             -5.2242 -4.8262             -5.2242 -4.8262 TS439 173
174 TS444             -5.2242 -4.8262             -5.2242 -4.8262 TS444 174
175 TS450             -5.2242 -4.8262             -5.2242 -4.8262 TS450 175
176 TS458             -5.2242 -4.8262             -5.2242 -4.8262 TS458 176
177 TS461             -5.2242 -4.8262             -5.2242 -4.8262 TS461 177
178 TS484             -5.2242 -4.8262             -5.2242 -4.8262 TS484 178