T0557

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0557

NeR70A from unknown species

Target type: Server only

Target sequence:

>T0557 NeR70A, unknown species, 145 residues
MRSATDLLDELNAVDESARIEAKRASDMGKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLEQVGGKTLLVVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRCV

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2kyy

Jmol of T0557 structure : 2kyy

PyMOL of T0557

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0557A1-1531-126

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

It is three layers domain, a/b/a, alpha-beta-alpha-beta-alpha-beta-beta-linker-beta hairpin. The central sheet order: 3421, 4 strand is antiparrel to the rest. No good SCOP representative found.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3lmm_A | PyMOL of 3lmm A 9-159

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Divergent AAA domain (PF04326).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0557 T0557 T0557 T0557
First score First Z-score Best score Best Z-score
1 TS490 63.4920 56.3490 1.1658 1.2940 63.4920 57.5400 1.1658 1.3707 TS490 1
2 TS104 62.8970 49.5370 1.1324 0.8553 62.8970 49.5370 1.1324 0.8553 TS104 2
3 TS380 62.6980 53.4390 1.1212 1.1066 62.6980 53.4390 1.1212 1.1066 TS380 3
4 TS470 62.5000 55.3570 1.1101 1.2301 62.6980 55.3570 1.1212 1.2301 TS470 4
5 TS345 62.3020 52.2490 1.0989 1.0300 62.3020 52.2490 1.0989 1.0300 TS345 5
6 TS321 61.9050 55.4230 1.0766 1.2344 68.4520 61.7060 1.4444 1.6390 TS321 6
7 TS419 61.9050 55.4230 1.0766 1.2344 61.9050 55.4230 1.0766 1.2344 TS419 7
8 TS449 61.7060 46.4290 1.0655 0.6552 61.7060 46.4290 1.0655 0.6552 TS449 8
9 TS453 61.7060 46.4290 1.0655 0.6552 61.7060 46.4290 1.0655 0.6552 TS453 9
10 TS346 61.7060 46.4290 1.0655 0.6552 61.7060 46.4290 1.0655 0.6552 TS346 10
11 TS407 60.9130 54.5630 1.0209 1.1790 62.5000 55.3570 1.1101 1.2301 TS407 11
12 TS077 60.9130 47.9500 1.0209 0.7531 60.9130 47.9500 1.0209 0.7531 TS077 12
13 TS276 60.5160 50.9920 0.9986 0.9490 60.5160 50.9920 0.9986 0.9490 TS276 13
14 TS477 60.5160 50.9920 0.9986 0.9490 60.5160 50.9920 0.9986 0.9490 TS477 14
15 TS286 60.5160 50.9920 0.9986 0.9490 60.5160 50.9920 0.9986 0.9490 TS286 15
16 TS094 60.5160 50.3310 0.9986 0.9064 62.5000 55.3570 1.1101 1.2301 TS094 16
17 TS060 60.5160 50.3310 0.9986 0.9064 62.5000 55.3570 1.1101 1.2301 TS060 17
18 TS428 60.3170 50.5290 0.9874 0.9192 62.5000 55.3570 1.1101 1.2301 TS428 18
19 TS037 60.1190 50.0660 0.9763 0.8894 62.1030 55.2250 1.0878 1.2216 TS037 19
20 TS302 60.1190 47.6190 0.9763 0.7318 60.1190 47.6190 0.9763 0.7318 TS302 20
21 TS142 60.1190 47.6190 0.9763 0.7318 60.1190 47.6190 0.9763 0.7318 TS142 21
22 TS291 59.9210 56.2170 0.9652 1.2855 60.1190 56.2170 0.9763 1.2855 TS291 22
23 TS361 59.9210 53.9680 0.9652 1.1407 60.1190 53.9680 0.9763 1.1407 TS361 23
24 TS236 59.5240 55.2910 0.9429 1.2259 59.5240 55.2910 0.9429 1.2259 TS236 24
25 TS088 59.5240 55.1590 0.9429 1.2174 59.5240 55.1590 0.9429 1.2174 TS088 25
26 TS113 59.1270 49.7350 0.9206 0.8681 62.3020 54.1010 1.0989 1.1492 TS113 26
27 TS395 58.5320 54.0340 0.8872 1.1449 60.7140 56.8780 1.0097 1.3281 TS395 27
28 TS391 58.5320 48.0820 0.8872 0.7616 58.5320 48.0820 0.8872 0.7616 TS391 28
29 TS028 58.3330 45.9660 0.8760 0.6253 58.3330 45.9660 0.8760 0.6253 TS028 29
30 TS245 57.9370 53.8360 0.8537 1.1322 57.9370 53.8360 0.8537 1.1322 TS245 30
31 TS114 57.3410 53.2410 0.8202 1.0938 57.5400 53.5710 0.8314 1.1151 TS114 31
32 TS429 57.3410 46.3620 0.8202 0.6508 57.3410 52.5790 0.8202 1.0512 TS429 32
33 TS102 56.9440 54.0340 0.7979 1.1449 56.9440 54.0340 0.7979 1.1449 TS102 33
34 TS103 56.9440 50.9920 0.7979 0.9490 56.9440 50.9920 0.7979 0.9490 TS103 34
35 TS117 56.9440 49.2720 0.7979 0.8382 58.5320 53.3730 0.8872 1.1023 TS117 35
36 TS452 56.7460 52.1160 0.7868 1.0214 56.9440 52.1160 0.7979 1.0214 TS452 36
37 TS208 56.7460 50.3970 0.7868 0.9107 57.9370 50.3970 0.8537 0.9107 TS208 37
38 TS166 56.5480 51.0580 0.7757 0.9533 56.5480 51.0580 0.7757 0.9533 TS166 38
39 TS047 55.7540 51.1240 0.7311 0.9575 55.7540 51.1240 0.7311 0.9575 TS047 39
40 TS056 55.3570 49.0080 0.7088 0.8212 57.7380 51.1900 0.8425 0.9618 TS056 40
41 TS481 55.3570 45.7010 0.7088 0.6083 55.3570 46.3620 0.7088 0.6508 TS481 41
42 TS213 55.3570 44.7090 0.7088 0.5444 55.5560 48.1480 0.7200 0.7659 TS213 42
43 TS127 55.3570 44.4440 0.7088 0.5273 58.9290 48.3470 0.9095 0.7787 TS127 43
44 TS273 55.1590 50.9260 0.6977 0.9448 55.1590 50.9260 0.6977 0.9448 TS273 44
45 TS001 55.1590 50.9260 0.6977 0.9448 55.1590 50.9260 0.6977 0.9448 TS001 45
46 TS296 55.1590 50.9260 0.6977 0.9448 55.1590 50.9260 0.6977 0.9448 TS296 46
47 TS174 55.1590 47.8840 0.6977 0.7489 55.1590 47.8840 0.6977 0.7489 TS174 47
48 TS307 55.1590 45.8990 0.6977 0.6210 57.9370 52.2490 0.8537 1.0300 TS307 48
49 TS119 54.9600 45.4370 0.6865 0.5913 55.7540 49.4050 0.7311 0.8468 TS119 49
50 TS002 54.5630 44.5110 0.6642 0.5316 55.1590 46.1640 0.6977 0.6381 TS002 50
51 TS319 54.3650 48.1480 0.6531 0.7659 55.1590 50.9260 0.6977 0.9448 TS319 51
52 TS409 54.1670 46.4950 0.6419 0.6594 54.1670 46.4950 0.6419 0.6594 TS409 52
53 TS171 53.7700 46.6270 0.6196 0.6679 53.7700 46.6270 0.6196 0.6679 TS171 53
54 TS420 53.1750 47.8840 0.5862 0.7489 53.1750 47.8840 0.5862 0.7489 TS420 54
55 TS471 53.1750 47.8840 0.5862 0.7489 53.1750 47.8840 0.5862 0.7489 TS471 55
56 TS253 52.5790 39.6160 0.5527 0.2164 54.3650 41.6670 0.6531 0.3485 TS253 56
57 TS476 52.3810 47.7510 0.5416 0.7403 52.3810 47.7510 0.5416 0.7403 TS476 57
58 TS026 52.3810 39.2860 0.5416 0.1952 52.3810 42.0630 0.5416 0.3740 TS026 58
59 TS366 52.1830 40.4100 0.5305 0.2675 52.1830 40.4100 0.5305 0.2675 TS366 59
60 TS063 52.1830 40.4100 0.5305 0.2675 59.9210 53.3070 0.9652 1.0981 TS063 60
61 AL396 51.7860 47.1560 0.5082 0.7020 51.7860 47.1560 0.5082 0.7020 AL396 61
62 TS173 51.5870 48.0160 0.4970 0.7574 54.7620 50.0000 0.6754 0.8851 TS173 62
63 TS457 51.3890 41.7330 0.4859 0.3527 52.9760 41.7330 0.5750 0.3527 TS457 63
64 TS215 51.1900 41.9310 0.4747 0.3655 54.5630 45.5690 0.6642 0.5998 TS215 64
65 TS080 51.1900 41.9310 0.4747 0.3655 54.5630 45.5690 0.6642 0.5998 TS080 65
66 TS055 50.7940 42.9890 0.4525 0.4336 54.9600 46.7590 0.6865 0.6764 TS055 66
67 TS018 50.5950 40.4760 0.4413 0.2718 50.5950 40.4760 0.4413 0.2718 TS018 67
68 TS165 49.2060 42.5930 0.3632 0.4081 56.9440 42.5930 0.7979 0.4081 TS165 68
69 TS214 45.2380 32.2090 0.1403 -0.2606 47.6190 40.7410 0.2741 0.2889 TS214 69
70 AL285 43.0560 35.1190 0.0178 -0.0732 43.0560 35.1190 0.0178 -0.0732 AL285 70
71 TS129 34.1270 21.3620 -0.4838 -0.9591 35.1190 21.6930 -0.4281 -0.9378 TS129 71
72 TS435 26.5870 23.0160 -0.9074 -0.8526 29.1670 25.3310 -0.7625 -0.7035 TS435 72
73 TS218 26.1900 23.2140 -0.9297 -0.8399 26.1900 24.0080 -0.9297 -0.7887 TS218 73
74 TS275 25.0000 22.2220 -0.9966 -0.9037 42.6590 34.1930 -0.0045 -0.1328 TS275 74
75 TS014 23.8100 19.4440 -1.0634 -1.0826 24.6030 19.8410 -1.0189 -1.0571 TS014 75
76 TS220 22.4210 21.3620 -1.1415 -0.9591 60.1190 47.6190 0.9763 0.7318 TS220 76
77 TS447 22.4210 21.3620 -1.1415 -0.9591 60.1190 47.6190 0.9763 0.7318 TS447 77
78 TS355 22.4210 19.2460 -1.1415 -1.0954 22.4210 19.2460 -1.1415 -1.0954 TS355 78
79 TS328 21.8250 18.3860 -1.1749 -1.1508 21.8250 18.3860 -1.1749 -1.1508 TS328 79
80 TS257 20.4370 19.0480 -1.2529 -1.1081 22.0240 20.1060 -1.1638 -1.0400 TS257 80
81 TS250 19.6430 16.9310 -1.2975 -1.2445 19.6430 17.2620 -1.2975 -1.2232 TS250 81
82 TS350 18.0560 18.0560 -1.3867 -1.1720 20.8330 19.7750 -1.2307 -1.0613 TS350 82
83 TS207 18.0560 15.4100 -1.3867 -1.3424 19.8410 15.4100 -1.2864 -1.3424 TS207 83
84 TS444 18.0560 15.0130 -1.3867 -1.3680 20.8330 16.7330 -1.2307 -1.2572 TS444 84
85 TS248 18.0560 14.7490 -1.3867 -1.3850 18.0560 14.7490 -1.3867 -1.3850 TS248 85
86 TS304 17.6590 16.0050 -1.4090 -1.3041 17.8570 16.2700 -1.3979 -1.2870 TS304 86
87 RANDOM 16.37 14.00 -1.4814 -1.4332 16.37 14.00 -1.4814 -1.4332 RANDOM 87
88 TS229 15.4760 14.0870 -1.5316 -1.4276 17.6590 16.2040 -1.4090 -1.2913 TS229 88
89 TS289 15.0790 12.4340 -1.5539 -1.5341 15.0790 12.4340 -1.5539 -1.5341 TS289 89
90 TS244 14.8810 12.6320 -1.5650 -1.5213 53.9680 46.6930 0.6308 0.6722 TS244 90
91 TS009             -1.4814 -1.4332             -1.4814 -1.4332 TS009 91
92 TS016             -1.4814 -1.4332             -1.4814 -1.4332 TS016 92
93 TS020             -1.4814 -1.4332             -1.4814 -1.4332 TS020 93
94 TS029             -1.4814 -1.4332             -1.4814 -1.4332 TS029 94
95 TS033             -1.4814 -1.4332             -1.4814 -1.4332 TS033 95
96 TS035             -1.4814 -1.4332             -1.4814 -1.4332 TS035 96
97 TS039             -1.4814 -1.4332             -1.4814 -1.4332 TS039 97
98 TS042             -1.4814 -1.4332             -1.4814 -1.4332 TS042 98
99 TS044             -1.4814 -1.4332             -1.4814 -1.4332 TS044 99
100 TS045             -1.4814 -1.4332             -1.4814 -1.4332 TS045 100
101 TS061             -1.4814 -1.4332             -1.4814 -1.4332 TS061 101
102 TS074             -1.4814 -1.4332             -1.4814 -1.4332 TS074 102
103 TS075             -1.4814 -1.4332             -1.4814 -1.4332 TS075 103
104 TS083             -1.4814 -1.4332             -1.4814 -1.4332 TS083 104
105 TS084             -1.4814 -1.4332             -1.4814 -1.4332 TS084 105
106 TS086             -1.4814 -1.4332             -1.4814 -1.4332 TS086 106
107 TS096             -1.4814 -1.4332             -1.4814 -1.4332 TS096 107
108 TS105             -1.4814 -1.4332             -1.4814 -1.4332 TS105 108
109 TS110             -1.4814 -1.4332             -1.4814 -1.4332 TS110 109
110 TS140             -1.4814 -1.4332             -1.4814 -1.4332 TS140 110
111 TS147             -1.4814 -1.4332             -1.4814 -1.4332 TS147 111
112 TS149             -1.4814 -1.4332             -1.4814 -1.4332 TS149 112
113 TS150             -1.4814 -1.4332             -1.4814 -1.4332 TS150 113
114 TS152             -1.4814 -1.4332             -1.4814 -1.4332 TS152 114
115 TS153             -1.4814 -1.4332             -1.4814 -1.4332 TS153 115
116 TS154             -1.4814 -1.4332             -1.4814 -1.4332 TS154 116
117 TS160             -1.4814 -1.4332             -1.4814 -1.4332 TS160 117
118 TS170             -1.4814 -1.4332             -1.4814 -1.4332 TS170 118
119 TS172             -1.4814 -1.4332             -1.4814 -1.4332 TS172 119
120 TS178             -1.4814 -1.4332             -1.4814 -1.4332 TS178 120
121 TS180             -1.4814 -1.4332             -1.4814 -1.4332 TS180 121
122 TS182             -1.4814 -1.4332             -1.4814 -1.4332 TS182 122
123 TS184             -1.4814 -1.4332             -1.4814 -1.4332 TS184 123
124 TS186             -1.4814 -1.4332             -1.4814 -1.4332 TS186 124
125 TS189             -1.4814 -1.4332             -1.4814 -1.4332 TS189 125
126 TS192             -1.4814 -1.4332             -1.4814 -1.4332 TS192 126
127 TS199             -1.4814 -1.4332             -1.4814 -1.4332 TS199 127
128 TS200             -1.4814 -1.4332             -1.4814 -1.4332 TS200 128
129 TS206             -1.4814 -1.4332             -1.4814 -1.4332 TS206 129
130 TS228             -1.4814 -1.4332             -1.4814 -1.4332 TS228 130
131 TS240             -1.4814 -1.4332             -1.4814 -1.4332 TS240 131
132 TS242             -1.4814 -1.4332             -1.4814 -1.4332 TS242 132
133 TS254             -1.4814 -1.4332             -1.4814 -1.4332 TS254 133
134 TS261             -1.4814 -1.4332             -1.4814 -1.4332 TS261 134
135 TS263             -1.4814 -1.4332             -1.4814 -1.4332 TS263 135
136 TS264             -1.4814 -1.4332             -1.4814 -1.4332 TS264 136
137 TS269             -1.4814 -1.4332             -1.4814 -1.4332 TS269 137
138 TS278             -1.4814 -1.4332             -1.4814 -1.4332 TS278 138
139 TS279             -1.4814 -1.4332             -1.4814 -1.4332 TS279 139
140 TS282             -1.4814 -1.4332             -1.4814 -1.4332 TS282 140
141 TS295             -1.4814 -1.4332             -1.4814 -1.4332 TS295 141
142 TS297             -1.4814 -1.4332             -1.4814 -1.4332 TS297 142
143 TS299             -1.4814 -1.4332             -1.4814 -1.4332 TS299 143
144 TS300             -1.4814 -1.4332             -1.4814 -1.4332 TS300 144
145 TS301             -1.4814 -1.4332             -1.4814 -1.4332 TS301 145
146 TS311             -1.4814 -1.4332             -1.4814 -1.4332 TS311 146
147 TS314             -1.4814 -1.4332             -1.4814 -1.4332 TS314 147
148 TS316             -1.4814 -1.4332             -1.4814 -1.4332 TS316 148
149 TS322             -1.4814 -1.4332             -1.4814 -1.4332 TS322 149
150 TS324             -1.4814 -1.4332             -1.4814 -1.4332 TS324 150
151 TS330             -1.4814 -1.4332             -1.4814 -1.4332 TS330 151
152 TS331             -1.4814 -1.4332             -1.4814 -1.4332 TS331 152
153 TS333             -1.4814 -1.4332             -1.4814 -1.4332 TS333 153
154 TS336             -1.4814 -1.4332             -1.4814 -1.4332 TS336 154
155 TS347             -1.4814 -1.4332             -1.4814 -1.4332 TS347 155
156 TS353             -1.4814 -1.4332             -1.4814 -1.4332 TS353 156
157 TS358             -1.4814 -1.4332             -1.4814 -1.4332 TS358 157
158 TS360             -1.4814 -1.4332             -1.4814 -1.4332 TS360 158
159 TS362             -1.4814 -1.4332             -1.4814 -1.4332 TS362 159
160 TS365             -1.4814 -1.4332             -1.4814 -1.4332 TS365 160
161 TS373             -1.4814 -1.4332             -1.4814 -1.4332 TS373 161
162 TS382             -1.4814 -1.4332             -1.4814 -1.4332 TS382 162
163 TS386             -1.4814 -1.4332             -1.4814 -1.4332 TS386 163
164 TS399             -1.4814 -1.4332             -1.4814 -1.4332 TS399 164
165 TS400             -1.4814 -1.4332             -1.4814 -1.4332 TS400 165
166 TS402             -1.4814 -1.4332             -1.4814 -1.4332 TS402 166
167 TS403             -1.4814 -1.4332             -1.4814 -1.4332 TS403 167
168 TS408             -1.4814 -1.4332             -1.4814 -1.4332 TS408 168
169 TS418             -1.4814 -1.4332             -1.4814 -1.4332 TS418 169
170 TS423             -1.4814 -1.4332             -1.4814 -1.4332 TS423 170
171 TS424             -1.4814 -1.4332             -1.4814 -1.4332 TS424 171
172 TS433             -1.4814 -1.4332             -1.4814 -1.4332 TS433 172
173 TS436             -1.4814 -1.4332             -1.4814 -1.4332 TS436 173
174 TS439             -1.4814 -1.4332             -1.4814 -1.4332 TS439 174
175 TS450             -1.4814 -1.4332             -1.4814 -1.4332 TS450 175
176 TS458             -1.4814 -1.4332             -1.4814 -1.4332 TS458 176
177 TS461             -1.4814 -1.4332             -1.4814 -1.4332 TS461 177
178 TS484             -1.4814 -1.4332             -1.4814 -1.4332 TS484 178