T0574

NP_250624.1 from Pseudomonas aeruginosa PA01

Target sequence:

>T0574 NP_250624.1, Pseudomonas aeruginosa PA01, 126 residues
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK

HHsearch_pdb70_15May10, HHsearch_scop70_1.75, HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:

Method: X-ray, res= Å, R/Rfree=

Determined by: JCSG

PDB ID: 3nrf

Jmol of T0574 structure : 3nrf

PyMOL of T0574

Domains:

Single domain protein.

DomainID	Chain	Range in raw pdb	Range in targetpdb
T0574	A	25-126	25-126
T0574	B	23-125	23-125

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

TRF2 superfamily, Ig-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM alignment.

Closest templates:

Template manually selected by shuoyong:

3cfu_A | PyMOL of 3cfu A

Template selected by HHpred server group:

1xq4_A | PyMOL | this pdbchain contains scop domain: d1xq4a_ A:

3cfu_A | PyMOL

Target sequence - PDB file inconsistencies:

Sequence classification:

Telomeric repeat-binding factor 2 (PF11611).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

#	GROUP ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	↓ GROUP	#
		T0574		T0574		T0574		T0574
		First score		First Z-score		Best score		Best Z-score
1	TS096	62.6210	53.0740	1.7855	1.9229	62.6210	53.0740	1.7855	1.9229	TS096	1
2	TS382	61.6500	47.2490	1.7195	1.4386	61.6500	47.2490	1.7195	1.4386	TS382	2
3	TS418	60.4370	42.9610	1.6372	1.0822	60.4370	42.9610	1.6372	1.0822	TS418	3
4	TS016	60.1940	45.3070	1.6206	1.2772	61.4080	51.5370	1.7031	1.7951	TS016	4
5	TS113	59.9510	45.5500	1.6041	1.2974	59.9510	48.0580	1.6041	1.5059	TS113	5
6	TS110	59.4660	49.3530	1.5712	1.6135	59.4660	49.3530	1.5712	1.6135	TS110	6
7	TS300	59.4660	44.9030	1.5712	1.2436	59.4660	44.9030	1.5712	1.2436	TS300	7
8	TS094	59.4660	44.9030	1.5712	1.2436	59.4660	47.8960	1.5712	1.4924	TS094	8
9	TS407	59.4660	44.9030	1.5712	1.2436	59.4660	47.8960	1.5712	1.4924	TS407	9
10	TS428	59.4660	44.9030	1.5712	1.2436	59.4660	44.9030	1.5712	1.2436	TS428	10
11	TS060	59.4660	44.9030	1.5712	1.2436	59.4660	44.9030	1.5712	1.2436	TS060	11
12	TS402	58.0100	44.1750	1.4723	1.1831	58.0100	44.1750	1.4723	1.1831	TS402	12
13	TS365	57.2820	49.8380	1.4228	1.6539	57.2820	49.8380	1.4228	1.6539	TS365	13
14	TS490	56.3110	40.9390	1.3569	0.9141	59.9510	45.4690	1.6041	1.2907	TS490	14
15	TS172	56.0680	48.9480	1.3404	1.5799	56.6180	49.7570	1.3777	1.6471	TS172	15
16	TS276	55.8250	47.7350	1.3239	1.4790	55.8250	48.0580	1.3239	1.5059	TS276	16
17	TS077	55.8250	47.7350	1.3239	1.4790	55.8250	48.0580	1.3239	1.5059	TS077	17
18	TS286	55.8250	47.7350	1.3239	1.4790	55.8250	48.0580	1.3239	1.5059	TS286	18
19	TS033	55.8250	46.7640	1.3239	1.3983	55.8250	46.7640	1.3239	1.3983	TS033	19
20	TS088	55.3400	48.5440	1.2909	1.5463	55.3400	48.8670	1.2909	1.5731	TS088	20
21	TS299	55.1470	45.0160	1.2778	1.2530	55.6370	47.9580	1.3111	1.4976	TS299	21
22	TS215	55.0970	45.8740	1.2744	1.3243	55.0970	46.1170	1.2744	1.3445	TS215	22
23	TS119	55.0970	45.8740	1.2744	1.3243	55.0970	45.8740	1.2744	1.3243	TS119	23
24	TS002	55.0970	45.8740	1.2744	1.3243	55.0970	45.8740	1.2744	1.3243	TS002	24
25	TS380	55.0970	41.3430	1.2744	0.9476	55.0970	41.3430	1.2744	0.9476	TS380	25
26	TS297	54.6120	45.8740	1.2415	1.3243	54.6120	45.8740	1.2415	1.3243	TS297	26
27	TS248	54.1670	45.9970	1.2112	1.3345	54.1670	45.9970	1.2112	1.3345	TS248	27
28	TS429	54.1260	44.7410	1.2084	1.2301	54.6120	44.7410	1.2415	1.2301	TS429	28
29	TS192	53.8830	44.1750	1.1919	1.1831	53.8830	44.1750	1.1919	1.1831	TS192	29
30	TS395	53.3980	46.9260	1.1590	1.4118	53.8830	47.7350	1.1919	1.4790	TS395	30
31	TS419	53.3980	44.4980	1.1590	1.2099	53.3980	44.4980	1.1590	1.2099	TS419	31
32	TS166	53.3980	44.4980	1.1590	1.2099	53.3980	45.8330	1.1590	1.3209	TS166	32
33	TS245	53.1550	44.4170	1.1425	1.2032	53.1550	44.4170	1.1425	1.2032	TS245	33
34	TS127	53.1550	42.6380	1.1425	1.0553	53.1550	42.6380	1.1425	1.0553	TS127	34
35	TS361	52.4270	44.6600	1.0930	1.2234	52.4270	44.6600	1.0930	1.2234	TS361	35
36	TS458	52.4270	43.2040	1.0930	1.1024	52.4270	44.5790	1.0930	1.2167	TS458	36
37	TS408	52.4270	42.8800	1.0930	1.0754	52.4510	42.8800	1.0947	1.0754	TS408	37
38	TS470	52.2060	42.8920	1.0780	1.0764	59.4660	44.9030	1.5712	1.2436	TS470	38
39	TS399	52.1840	44.5790	1.0765	1.2167	57.0390	44.8220	1.4063	1.2369	TS399	39
40	TS102	52.1840	41.9900	1.0765	1.0014	52.1840	44.8220	1.0765	1.2369	TS102	40
41	TS149	52.1840	41.9900	1.0765	1.0014	52.1840	41.9900	1.0765	1.0014	TS149	41
42	TS080	51.7160	42.4020	1.0447	1.0357	55.0970	46.1170	1.2744	1.3445	TS080	42
43	TS449	51.6990	43.6080	1.0436	1.1359	51.6990	43.6080	1.0436	1.1359	TS449	43
44	TS453	51.6990	43.6080	1.0436	1.1359	51.6990	43.6080	1.0436	1.1359	TS453	44
45	TS346	51.6990	43.6080	1.0436	1.1359	51.6990	43.6080	1.0436	1.1359	TS346	45
46	TS037	51.4560	42.7990	1.0271	1.0687	59.9510	49.0290	1.6041	1.5866	TS037	46
47	TS319	51.4560	38.4300	1.0271	0.7055	51.4560	38.4300	1.0271	0.7055	TS319	47
48	TS056	51.4560	38.4300	1.0271	0.7055	53.6410	46.1970	1.1755	1.3512	TS056	48
49	TS273	51.4560	38.4300	1.0271	0.7055	51.4560	38.4300	1.0271	0.7055	TS273	49
50	TS001	51.4560	38.4300	1.0271	0.7055	51.4560	38.4300	1.0271	0.7055	TS001	50
51	TS457	51.2140	41.8280	1.0106	0.9880	51.2140	41.8280	1.0106	0.9880	TS457	51
52	TS400	51.2140	41.1810	1.0106	0.9342	55.3400	43.2040	1.2909	1.1024	TS400	52
53	TS173	51.2140	40.5340	1.0106	0.8804	51.2140	40.5340	1.0106	0.8804	TS173	53
54	TS452	50.7280	41.3430	0.9776	0.9476	50.9710	41.9090	0.9941	0.9947	TS452	54
55	TS242	50.4850	41.7480	0.9611	0.9813	50.7280	41.9090	0.9776	0.9947	TS242	55
56	TS104	50.4850	41.4240	0.9611	0.9544	50.4850	41.4240	0.9611	0.9544	TS104	56
57	TS423	50.2450	42.8920	0.9448	1.0764	52.1840	43.7700	1.0765	1.1494	TS423	57
58	TS321	50.0000	44.1180	0.9282	1.1783	52.9410	44.1180	1.1280	1.1783	TS321	58
59	TS199	50.0000	44.1180	0.9282	1.1783	50.0000	44.1180	0.9282	1.1783	TS199	59
60	TS114	50.0000	43.0420	0.9282	1.0889	50.0000	43.0420	0.9282	1.0889	TS114	60
61	TS253	49.7570	39.0780	0.9117	0.7593	51.2250	41.1760	1.0114	0.9338	TS253	61
62	TS386	48.7860	38.3500	0.8457	0.6988	49.0290	43.5280	0.8622	1.1293	TS386	62
63	TS360	48.7860	37.4600	0.8457	0.6248	51.9420	42.5570	1.0601	1.0486	TS360	63
64	TS213	47.5490	37.2550	0.7617	0.6078	47.5490	37.2550	0.7617	0.6078	TS213	64
65	TS018	47.3300	38.2690	0.7468	0.6921	47.3300	38.2690	0.7468	0.6921	TS018	65
66	TS240	47.3300	37.6210	0.7468	0.6382	47.3300	37.6210	0.7468	0.6382	TS240	66
67	TS061	47.0870	38.5110	0.7303	0.7122	47.3300	38.5110	0.7468	0.7122	TS061	67
68	TS295	47.0590	40.3590	0.7284	0.8658	56.5530	44.8530	1.3733	1.2394	TS295	68
69	TS174	46.3590	38.9160	0.6808	0.7459	46.3590	38.9160	0.6808	0.7459	TS174	69
70	TS477	46.0780	40.6050	0.6618	0.8863	46.0780	40.6050	0.6618	0.8863	TS477	70
71	TS244	45.8740	39.2390	0.6479	0.7727	46.6020	39.6440	0.6973	0.8064	TS244	71
72	TS103	45.8330	36.7650	0.6451	0.5670	47.8160	37.9450	0.7798	0.6651	TS103	72
73	TS045	45.3880	37.2980	0.6149	0.6114	45.3880	37.2980	0.6149	0.6114	TS045	73
74	TS435	44.9030	38.6730	0.5819	0.7257	44.9030	38.6730	0.5819	0.7257	TS435	74
75	TS171	43.9320	37.7830	0.5160	0.6517	43.9320	37.7830	0.5160	0.6517	TS171	75
76	TS476	43.9320	34.5470	0.5160	0.3827	43.9320	34.5470	0.5160	0.3827	TS476	76
77	TS307	43.6270	37.8270	0.4953	0.6553	43.6270	37.8270	0.4953	0.6553	TS307	77
78	TS035	43.4470	35.5180	0.4830	0.4634	43.4470	35.5180	0.4830	0.4634	TS035	78
79	TS484	42.4020	35.8660	0.4120	0.4923	42.4760	36.7650	0.4171	0.5670	TS484	79
80	TS165	42.2330	33.4950	0.4006	0.2952	42.2330	34.0690	0.4006	0.3429	TS165	80
81	TS420	41.9900	35.3560	0.3841	0.4499	41.9900	35.3560	0.3841	0.4499	TS420	81
82	TS471	41.9900	35.3560	0.3841	0.4499	41.9900	35.3560	0.3841	0.4499	TS471	82
83	AL285	41.5050	33.7380	0.3511	0.3154	41.5050	33.7380	0.3511	0.3154	AL285	83
84	TS028	41.0190	35.8410	0.3181	0.4902	43.9320	36.2460	0.5160	0.5239	TS028	84
85	TS083	40.4410	33.4150	0.2788	0.2885	40.4410	33.4150	0.2788	0.2885	TS083	85
86	TS236	37.8640	27.0230	0.1038	-0.2428	37.8640	27.0230	0.1038	-0.2428	TS236	86
87	TS154	37.1360	31.6340	0.0543	0.1405	37.1360	31.6340	0.0543	0.1405	TS154	87
88	TS218	36.6500	28.7220	0.0213	-0.1016	37.3790	31.7960	0.0708	0.1540	TS218	88
89	TS117	36.0290	29.0030	-0.0209	-0.0782	36.2750	31.2090	-0.0042	0.1052	TS117	89
90	TS214	34.9510	27.2650	-0.0941	-0.2227	34.9510	28.0740	-0.0941	-0.1555	TS214	90
91	TS186	34.4660	27.7510	-0.1270	-0.1823	35.0490	27.7510	-0.0874	-0.1823	TS186	91
92	TS208	34.2230	27.1040	-0.1435	-0.2361	47.3040	35.2120	0.7450	0.4379	TS208	92
93	TS129	33.3330	26.3890	-0.2040	-0.2956	37.5000	31.9440	0.0791	0.1663	TS129	93
94	TS275	32.2820	25.6470	-0.2754	-0.3572	48.3010	38.2690	0.8128	0.6921	TS275	94
95	TS409	32.1080	26.0620	-0.2872	-0.3227	32.1080	26.0620	-0.2872	-0.3227	TS409	95
96	TS353	31.6180	27.8590	-0.3205	-0.1733	38.8350	35.1130	0.1697	0.4297	TS353	96
97	TS391	31.0680	26.5370	-0.3579	-0.2833	31.0680	26.5370	-0.3579	-0.2833	TS391	97
98	TS481	30.8820	26.9610	-0.3705	-0.2480	30.8820	26.9610	-0.3705	-0.2480	TS481	98
99	TS207	28.6760	23.2840	-0.5204	-0.5537	42.7180	34.4660	0.4335	0.3759	TS207	99
100	TS304	28.4310	23.5290	-0.5370	-0.5333	31.5530	28.4790	-0.3249	-0.1218	TS304	100
101	TS147	27.6700	24.1100	-0.5887	-0.4850	60.4370	50.2430	1.6372	1.6875	TS147	101
102	TS084	24.5100	17.9740	-0.8033	-0.9951	24.5100	20.8330	-0.8033	-0.7575	TS084	102
103	TS047	24.2650	19.3630	-0.8200	-0.8797	24.2650	19.3630	-0.8200	-0.8797	TS047	103
104	TS316	24.0200	21.0780	-0.8366	-0.7371	25.9800	21.4870	-0.7035	-0.7031	TS316	104
105	TS366	23.3010	18.3660	-0.8855	-0.9625	38.5920	32.2820	0.1532	0.1944	TS366	105
106	TS063	23.3010	18.3660	-0.8855	-0.9625	38.5920	32.2820	0.1532	0.1944	TS063	106
107	TS026	23.2840	17.0750	-0.8866	-1.0699	24.7550	21.6500	-0.7867	-0.6895	TS026	107
108	TS345	22.5490	16.9930	-0.9366	-1.0767	22.5730	20.1460	-0.9349	-0.8146	TS345	108
109	TS257	22.3300	18.2850	-0.9514	-0.9693	22.3300	18.2850	-0.9514	-0.9693	TS257	109
110	TS014	21.5690	16.7480	-1.0031	-1.0971	21.5690	16.7480	-1.0031	-1.0971	TS014	110
111	TS403	21.0780	17.9740	-1.0365	-0.9951	22.0590	18.3820	-0.9698	-0.9612	TS403	111
112	TS182	21.0780	17.3200	-1.0365	-1.0495	22.3040	18.5460	-0.9532	-0.9476	TS182	112
113	TS324	20.8330	17.8920	-1.0531	-1.0019	21.0780	18.4640	-1.0365	-0.9544	TS324	113
114	TS153	20.8330	17.4020	-1.0531	-1.0427	20.8330	17.4020	-1.0531	-1.0427	TS153	114
115	TS424	20.5880	17.1570	-1.0698	-1.0631	45.3430	37.3370	0.6118	0.6146	TS424	115
116	TS229	20.5880	16.3400	-1.0698	-1.1310	20.5880	16.9900	-1.0698	-1.0769	TS229	116
117	TS350	20.3880	17.4760	-1.0834	-1.0365	20.3880	17.9610	-1.0834	-0.9962	TS350	117
118	TS200	20.3880	16.5860	-1.0834	-1.1105	20.3880	16.5860	-1.0834	-1.1105	TS200	118
119	TS055	20.3430	18.0560	-1.0864	-0.9883	23.3010	19.0940	-0.8855	-0.9020	TS055	119
120	TS296	20.0980	15.1960	-1.1031	-1.2261	51.4560	38.4300	1.0271	0.7055	TS296	120
121	TS042	19.6600	16.5050	-1.1328	-1.1173	29.1260	23.3010	-0.4898	-0.5523	TS042	121
122	TS355	19.4170	17.6380	-1.1493	-1.0231	22.3040	18.8730	-0.9532	-0.9204	TS355	122
123	TS328	19.3630	15.6860	-1.1530	-1.1853	19.3630	15.6860	-1.1530	-1.1853	TS328	123
124	TS291	19.1180	17.2390	-1.1696	-1.0562	24.2650	21.3240	-0.8200	-0.7166	TS291	124
125	TS373	18.6890	14.9680	-1.1988	-1.2450	20.8330	18.4640	-1.0531	-0.9544	TS373	125
126	RANDOM	18.29	15.40	-1.2259	-1.2091	18.29	15.40	-1.2259	-1.2091	RANDOM	126
127	TS302	17.4760	15.1290	-1.2812	-1.2317	23.0390	18.9540	-0.9033	-0.9137	TS302	127
128	TS142	17.4760	15.1290	-1.2812	-1.2317	23.0390	18.9540	-0.9033	-0.9137	TS142	128
129	TS220	17.4760	15.1290	-1.2812	-1.2317	22.0590	18.6080	-0.9698	-0.9424	TS220	129
130	TS447	17.4760	15.1290	-1.2812	-1.2317	22.0590	18.6080	-0.9698	-0.9424	TS447	130
131	TS333	17.2330	14.9680	-1.2977	-1.2450	24.2720	20.5500	-0.8195	-0.7810	TS333	131
132	TS301	16.9120	15.4410	-1.3195	-1.2057	17.9610	16.3430	-1.2482	-1.1307	TS301	132
133	TS264	16.9120	14.2970	-1.3195	-1.3008	20.3880	18.1230	-1.0834	-0.9827	TS264	133
134	TS314	16.9120	12.8270	-1.3195	-1.4230	49.7570	42.1520	0.9117	1.0149	TS314	134
135	TS029	16.6670	13.2350	-1.3361	-1.3891	19.1180	15.3590	-1.1696	-1.2125	TS029	135
136	TS278	16.4220	13.9710	-1.3528	-1.3279	16.4220	13.9710	-1.3528	-1.3279	TS278	136
137	TS311	15.1960	13.1540	-1.4360	-1.3958	15.4410	13.1540	-1.4194	-1.3958	TS311	137
138	TS450	15.0490	13.2690	-1.4460	-1.3863	15.0490	13.2690	-1.4460	-1.3863	TS450	138
139	TS206	14.9510	12.8270	-1.4527	-1.4230	14.9510	12.8270	-1.4527	-1.4230	TS206	139
140	TS279	14.7060	11.6830	-1.4693	-1.5181	15.9310	12.9900	-1.3861	-1.4095	TS279	140
141	AL396	14.4610	11.8460	-1.4860	-1.5046	52.2060	42.8920	1.0780	1.0764	AL396	141
142	TS289	13.4800	11.3560	-1.5526	-1.5453	13.4800	11.3560	-1.5526	-1.5453	TS289	142
143	TS020	12.7450	11.2750	-1.6025	-1.5521	14.2160	12.2170	-1.5026	-1.4737	TS020	143
144	TS009			-1.2259	-1.2091			-1.2259	-1.2091	TS009	144
145	TS039			-1.2259	-1.2091			-1.2259	-1.2091	TS039	145
146	TS044			-1.2259	-1.2091			-1.2259	-1.2091	TS044	146
147	TS074			-1.2259	-1.2091			-1.2259	-1.2091	TS074	147
148	TS075			-1.2259	-1.2091			-1.2259	-1.2091	TS075	148
149	TS086			-1.2259	-1.2091			-1.2259	-1.2091	TS086	149
150	TS105			-1.2259	-1.2091			-1.2259	-1.2091	TS105	150
151	TS140			-1.2259	-1.2091			-1.2259	-1.2091	TS140	151
152	TS150			-1.2259	-1.2091			-1.2259	-1.2091	TS150	152
153	TS152			-1.2259	-1.2091			-1.2259	-1.2091	TS152	153
154	TS160			-1.2259	-1.2091			-1.2259	-1.2091	TS160	154
155	TS170			-1.2259	-1.2091			-1.2259	-1.2091	TS170	155
156	TS178			-1.2259	-1.2091			-1.2259	-1.2091	TS178	156
157	TS180			-1.2259	-1.2091			-1.2259	-1.2091	TS180	157
158	TS184			-1.2259	-1.2091			-1.2259	-1.2091	TS184	158
159	TS189			-1.2259	-1.2091			-1.2259	-1.2091	TS189	159
160	TS228			-1.2259	-1.2091			-1.2259	-1.2091	TS228	160
161	TS250			-1.2259	-1.2091			-1.3861	-1.2464	TS250	161
162	TS254			-1.2259	-1.2091			-1.2259	-1.2091	TS254	162
163	TS261			-1.2259	-1.2091			-1.2259	-1.2091	TS261	163
164	TS263			-1.2259	-1.2091			-1.2259	-1.2091	TS263	164
165	TS269			-1.2259	-1.2091			-1.2259	-1.2091	TS269	165
166	TS282			-1.2259	-1.2091			-1.2259	-1.2091	TS282	166
167	TS322			-1.2259	-1.2091			-1.2259	-1.2091	TS322	167
168	TS330			-1.2259	-1.2091			-1.2259	-1.2091	TS330	168
169	TS331			-1.2259	-1.2091			-1.2259	-1.2091	TS331	169
170	TS336			-1.2259	-1.2091			-1.2259	-1.2091	TS336	170
171	TS347			-1.2259	-1.2091			-1.2259	-1.2091	TS347	171
172	TS358			-1.2259	-1.2091			-1.2259	-1.2091	TS358	172
173	TS362			-1.2259	-1.2091			-1.2259	-1.2091	TS362	173
174	TS433			-1.2259	-1.2091			-1.2259	-1.2091	TS433	174
175	TS436			-1.2259	-1.2091			-1.2259	-1.2091	TS436	175
176	TS439			-1.2259	-1.2091			-1.2259	-1.2091	TS439	176
177	TS444			-1.2259	-1.2091			-1.2259	-1.2091	TS444	177
178	TS461			-1.2259	-1.2091			-1.2259	-1.2091	TS461	178

Targets
515	516	517	518
519	520	521	522
523	524	525	526
527	528	529	530
531	532	533	534
535	536	537	538
539	540	541	542
543	544	545	546
547	548	549	550
551	552	553	554
555	556	557	558
559	560	561	562
563	564	565	566
567	568	569	570
571	572	573	574
575	576	577	578
579	580	581	582
583	584	585	586
587	588	589	590
591	592	593	594
595	596	597	598
599	600	601	602
603	604	605	606
607	608	609	610
611	612	613	614
615	616	617	618
619	620	621	622
623	624	625	626
627	628	629	630
631	632	633	634
635	636	637	638
639	640	641	642
643