T0546 (canceled by organizer)

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0546

BvR159 from unknown species

Target type: Server only

Target sequence:

>T0546 BvR159, unknown species, 134 residues
MLKTILSIAGKPGLYKLISQGKNMLIVETVDAAKKRVPAYAHDKVISLADIAMYTDAEEVPLSEVLEAVKKKENGAVASINYKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVEAPA

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0

Structure:
Method: NMR
Determined by: NESG
PDB ID: canceled

Domains:  

  

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

medium hard target?. The N-terminal around 1-53 is dificult to predict. The rest part is multihelical. some similarity to SAM domain-like, but the N-terminal might be not like that, for example, it may forms beta-beta-alpha unit.

CASP category:

 

Closest templates:

Template manually selected by shuoyong:

No good template found for now, needs more study

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No significant hit. N-terminal(3-43) may be Domain of unknown function (DUF1859) (PF08948), C-terminal (59-127) may be Protein of unknown function (DUF1198) (PF06711).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP
1 TS001_1
2 TS001_2
3 TS001_3
4 TS001_4
5 TS001_5
6 TS002_1
7 TS002_2
8 TS002_3
9 TS002_4
10 TS002_5
11 TS014_1
12 TS014_2
13 TS014_3
14 TS014_4
15 TS014_5
16 TS018_1
17 TS018_2
18 TS018_3
19 TS018_4
20 TS018_5
21 TS028_1
22 TS028_2
23 TS028_3
24 TS028_4
25 TS028_5
26 TS037_1
27 TS037_2
28 TS037_3
29 TS037_4
30 TS037_5
31 TS047_1
32 TS055_1
33 TS055_2
34 TS055_3
35 TS055_4
36 TS055_5
37 TS056_1
38 TS056_2
39 TS056_3
40 TS056_4
41 TS056_5
42 TS060_1
43 TS060_2
44 TS060_3
45 TS060_4
46 TS060_5
47 TS063_1
48 TS063_2
49 TS063_3
50 TS063_4
51 TS063_5
52 TS077_1
53 TS077_2
54 TS077_3
55 TS077_4
56 TS077_5
57 TS080_1
58 TS080_2
59 TS080_3
60 TS080_4
61 TS080_5
62 TS088_1
63 TS088_2
64 TS088_3
65 TS088_4
66 TS088_5
67 TS094_1
68 TS094_2
69 TS094_3
70 TS094_4
71 TS094_5
72 TS102_1
73 TS102_2
74 TS102_3
75 TS102_4
76 TS102_5
77 TS103_1
78 TS103_2
79 TS103_3
80 TS103_4
81 TS103_5
82 TS104_1
83 TS113_1
84 TS113_2
85 TS113_3
86 TS113_4
87 TS113_5
88 TS114_1
89 TS114_2
90 TS114_3
91 TS114_4
92 TS114_5
93 TS117_1
94 TS117_2
95 TS117_3
96 TS117_3_1
97 TS117_3_2
98 TS117_4
99 TS117_5
100 TS117_5_1
101 TS117_5_2
102 TS119_1
103 TS119_2
104 TS119_3
105 TS119_4
106 TS119_5
107 TS127_1
108 TS127_2
109 TS127_3
110 TS127_4
111 TS127_5
112 TS129_1
113 TS129_2
114 TS129_3
115 TS129_4
116 TS129_5
117 TS142_1
118 TS142_2
119 TS142_3
120 TS142_4
121 TS142_5
122 TS165_1
123 TS165_2
124 TS165_3
125 TS165_4
126 TS165_5
127 TS166_1
128 TS166_2
129 TS166_3
130 TS166_4
131 TS166_5
132 TS171_1
133 TS173_1
134 TS173_2
135 TS173_3
136 TS173_4
137 TS173_5
138 TS174_1
139 TS174_2
140 TS174_3
141 TS174_4
142 TS174_5
143 TS207_1
144 TS207_2
145 TS207_3
146 TS207_4
147 TS207_5
148 TS208_1
149 TS208_2
150 TS208_3
151 TS208_4
152 TS208_5
153 TS213_1
154 TS213_2
155 TS213_3
156 TS213_4
157 TS213_5
158 TS214_1
159 TS214_2
160 TS214_3
161 TS214_4
162 TS214_5
163 TS215_1
164 TS215_2
165 TS215_3
166 TS215_4
167 TS215_5
168 TS218_1
169 TS218_2
170 TS218_3
171 TS218_4
172 TS218_5
173 TS220_1
174 TS220_2
175 TS220_3
176 TS220_4
177 TS220_5
178 TS229_1
179 TS229_2
180 TS229_3
181 TS229_4
182 TS229_5
183 TS236_1
184 TS236_2
185 TS236_3
186 TS236_4
187 TS236_5
188 TS244_1
189 TS244_2
190 TS244_3
191 TS244_4
192 TS244_5
193 TS250_1
194 TS250_2
195 TS253_1
196 TS253_2
197 TS253_3
198 TS253_4
199 TS253_5
200 TS257_1
201 TS257_2
202 TS257_3
203 TS257_4
204 TS257_5
205 TS264_1
206 TS264_2
207 TS264_3
208 TS264_4
209 TS264_5
210 TS273_1
211 TS273_2
212 TS273_3
213 TS273_4
214 TS273_5
215 TS275_1
216 TS275_2
217 TS275_3
218 TS275_4
219 TS275_5
220 TS276_1
221 TS276_2
222 TS276_3
223 TS276_4
224 TS276_5
225 TS282_1
226 TS282_2
227 TS282_3
228 TS282_4
229 TS282_5
230 AL285_1
231 AL285_2
232 AL285_3
233 AL285_4
234 AL285_5
235 TS286_1
236 TS286_2
237 TS286_3
238 TS286_4
239 TS286_5
240 TS289_1
241 TS291_1
242 TS291_2
243 TS291_3
244 TS291_4
245 TS291_5
246 TS296_1
247 TS296_2
248 TS296_3
249 TS296_4
250 TS296_5
251 TS302_1
252 TS302_2
253 TS302_3
254 TS302_4
255 TS302_5
256 TS304_1
257 TS304_2
258 TS304_3
259 TS304_4
260 TS304_5
261 TS307_1
262 TS307_2
263 TS307_3
264 TS307_4
265 TS307_5
266 TS319_1
267 TS319_2
268 TS319_3
269 TS319_4
270 TS319_5
271 TS321_1
272 TS321_2
273 TS321_3
274 TS321_4
275 TS321_5
276 TS328_1
277 TS345_1
278 TS345_2
279 TS345_3
280 TS345_4
281 TS345_5
282 TS346_1
283 TS350_1
284 TS350_2
285 TS350_3
286 TS350_4
287 TS350_5
288 TS355_1
289 TS355_2
290 TS355_3
291 TS355_4
292 TS355_5
293 TS361_1
294 TS361_2
295 TS361_3
296 TS361_4
297 TS361_5
298 TS366_1
299 TS366_2
300 TS366_3
301 TS366_4
302 TS366_5
303 TS380_1
304 TS380_2
305 TS380_3
306 TS380_4
307 TS380_5
308 TS391_1
309 TS395_1
310 TS395_2
311 TS395_3
312 TS395_4
313 TS395_5
314 AL396_1
315 AL396_2
316 AL396_3
317 AL396_4
318 AL396_5
319 TS407_1
320 TS407_2
321 TS407_3
322 TS407_4
323 TS407_5
324 TS409_1
325 TS409_2
326 TS409_3
327 TS409_4
328 TS409_5
329 TS418_1
330 TS418_2
331 TS418_3
332 TS418_4
333 TS418_5
334 TS419_1
335 TS419_2
336 TS419_3
337 TS419_4
338 TS419_5
339 TS420_1
340 TS428_1
341 TS428_2
342 TS428_3
343 TS428_4
344 TS428_5
345 TS429_1
346 TS429_2
347 TS429_3
348 TS429_4
349 TS429_5
350 TS435_1
351 TS435_2
352 TS435_3
353 TS435_4
354 TS435_5
355 TS436_1
356 TS447_1
357 TS447_2
358 TS447_3
359 TS447_4
360 TS447_5
361 TS449_1
362 TS452_1
363 TS452_2
364 TS452_3
365 TS452_4
366 TS452_5
367 TS453_1
368 TS457_1
369 TS457_2
370 TS457_3
371 TS457_4
372 TS457_5
373 TS470_1
374 TS470_2
375 TS470_3
376 TS470_4
377 TS470_5
378 TS471_1
379 TS476_1
380 TS481_1
381 TS481_2
382 TS481_3
383 TS481_4
384 TS481_5
385 TS490_1
386 TS490_2
387 TS490_3
388 TS490_4
389 TS490_5