T0551

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0551

SpR104 from unknown species

Target type: Server only

Target sequence:

>T0551 SpR104, unknown species, 74 residues
MKKMAEFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFKGN

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: NESG
PDB ID: 3obh

Jmol of T0551 structure : 3obh

PyMOL of T0551

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0551A12-777-72
T0551B10-765-71

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Some local similarity with helix-swapped dimer of beta(4)-alpha motifs.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1pcf_A | PyMOL of 1pcf A, weak local similairty to 1pcf_A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

DUF2128: Uncharacterized protein conserved in bacteria (DUF2128) (PF09901).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0551 T0551 T0551 T0551
First score First Z-score Best score Best Z-score
1 TS490 69.6970 61.8690 3.1408 3.5227 69.6970 61.8690 3.1408 3.5227 TS490 1
2 TS174 62.1210 45.0760 2.4615 1.6532 62.1210 45.0760 2.4615 1.6532 TS174 2
3 TS165 61.7420 51.6410 2.4275 2.3841 61.7420 51.6410 2.4275 2.3841 TS165 3
4 TS407 57.5760 50.7580 2.0540 2.2858 57.5760 50.7580 2.0540 2.2858 TS407 4
5 TS449 57.0900 47.6370 2.0104 1.9383 57.0900 47.6370 2.0104 1.9383 TS449 5
6 TS453 57.0900 47.6370 2.0104 1.9383 57.0900 47.6370 2.0104 1.9383 TS453 6
7 TS346 57.0900 47.6370 2.0104 1.9383 57.0900 47.6370 2.0104 1.9383 TS346 7
8 TS077 56.4390 49.3690 1.9520 2.1311 56.4390 49.3690 1.9520 2.1311 TS077 8
9 TS094 56.4390 44.3180 1.9520 1.5689 68.5610 62.5000 3.0389 3.5929 TS094 9
10 TS321 56.4390 44.3180 1.9520 1.5689 57.1970 45.5810 2.0200 1.7095 TS321 10
11 TS419 56.4390 44.3180 1.9520 1.5689 56.4390 44.3180 1.9520 1.5689 TS419 11
12 TS435 56.0610 50.2530 1.9181 2.2296 56.0610 50.2530 1.9181 2.2296 TS435 12
13 TS113 55.6820 49.1160 1.8841 2.1030 64.3940 55.0510 2.6653 2.7637 TS113 13
14 TS276 54.5450 45.9600 1.7822 1.7517 54.5450 45.9600 1.7822 1.7517 TS276 14
15 TS275 54.5450 45.9600 1.7822 1.7517 54.5450 45.9600 1.7822 1.7517 TS275 15
16 TS286 54.5450 45.9600 1.7822 1.7517 54.5450 45.9600 1.7822 1.7517 TS286 16
17 TS452 54.4780 48.0100 1.7762 1.9799 68.5610 62.5000 3.0389 3.5929 TS452 17
18 TS166 50.0000 41.1620 1.3747 1.2175 50.0000 41.1620 1.3747 1.2175 TS166 18
19 TS018 49.6210 39.0150 1.3407 0.9785 49.6210 39.0150 1.3407 0.9785 TS018 19
20 TS063 48.5070 38.8060 1.2408 0.9553 48.8640 43.0560 1.2728 1.4284 TS063 20
21 TS361 47.7270 34.7220 1.1709 0.5006 53.0300 46.0860 1.6463 1.7657 TS361 21
22 TS366 47.3480 42.0450 1.1369 1.3158 47.3480 42.0450 1.1369 1.3158 TS366 22
23 TS245 46.2690 40.0500 1.0401 1.0938 46.2690 40.0500 1.0401 1.0938 TS245 23
24 TS428 41.0450 36.0700 0.5717 0.6507 41.0450 36.0700 0.5717 0.6507 TS428 24
25 TS470 38.4330 30.4730 0.3375 0.0276 38.4330 31.6920 0.3375 0.1633 TS470 25
26 TS060 38.0600 31.8410 0.3041 0.1799 54.4780 48.5070 1.7762 2.0352 TS060 26
27 TS037 38.0600 31.0950 0.3041 0.0969 56.4390 49.8740 1.9520 2.1874 TS037 27
28 TS075 37.6870 29.9750 0.2706 -0.0278 37.6870 30.5560 0.2706 0.0369 TS075 28
29 TS088 37.6870 29.7260 0.2706 -0.0555 37.6870 31.4390 0.2706 0.1352 TS088 29
30 TS457 37.3130 30.3480 0.2371 0.0137 38.4330 31.6920 0.3375 0.1633 TS457 30
31 TS214 37.1210 28.7880 0.2199 -0.1599 37.1210 31.9440 0.2199 0.1914 TS214 31
32 TS253 36.5670 30.3480 0.1702 0.0137 38.8060 34.0800 0.3710 0.4292 TS253 32
33 TS104 35.6060 32.3230 0.0840 0.2336 35.6060 32.3230 0.0840 0.2336 TS104 33
34 TS218 35.6060 29.4190 0.0840 -0.0897 59.8480 55.0510 2.2577 2.7637 TS218 34
35 TS127 35.2270 34.2170 0.0500 0.4444 68.5610 60.6060 3.0389 3.3821 TS127 35
36 TS429 35.2270 31.4390 0.0500 0.1352 67.9100 56.2190 2.9806 2.8937 TS429 36
37 TS391 34.8480 27.7780 0.0161 -0.2724 34.8480 27.7780 0.0161 -0.2724 TS391 37
38 TS355 34.4700 31.9440 -0.0178 0.1914 34.4700 31.9440 -0.0178 0.1914 TS355 38
39 TS103 34.0910 33.5860 -0.0518 0.3742 34.0910 33.5860 -0.0518 0.3742 TS103 39
40 TS380 34.0910 26.2630 -0.0518 -0.4410 35.0750 28.3580 0.0364 -0.2078 TS380 40
41 TS291 33.7120 28.9140 -0.0858 -0.1459 38.4330 30.4730 0.3375 0.0276 TS291 41
42 TS481 33.3330 32.4490 -0.1198 0.2476 39.3940 33.4600 0.4237 0.3601 TS481 42
43 TS047 33.3330 27.2730 -0.1198 -0.3286 33.3330 27.2730 -0.1198 -0.3286 TS047 43
44 TS028 33.2090 29.2290 -0.1309 -0.1109 35.6060 31.5660 0.0840 0.1493 TS028 44
45 TS302 33.2090 29.2290 -0.1309 -0.1109 35.9850 33.7120 0.1180 0.3882 TS302 45
46 TS142 33.2090 29.2290 -0.1309 -0.1109 35.9850 33.7120 0.1180 0.3882 TS142 46
47 TS395 32.9550 25.1260 -0.1537 -0.5676 35.2270 30.1770 0.0500 -0.0053 TS395 47
48 TS140 32.5760 29.2930 -0.1877 -0.1037 32.5760 29.2930 -0.1877 -0.1037 TS140 48
49 TS213 32.1970 31.3130 -0.2216 0.1211 32.1970 31.3130 -0.2216 0.1211 TS213 49
50 TS418 31.8180 27.0200 -0.2556 -0.3568 35.9850 32.9550 0.1180 0.3039 TS418 50
51 TS304 31.4390 30.4290 -0.2896 0.0227 47.3480 34.4700 1.1369 0.4726 TS304 51
52 TS250 31.4390 28.9140 -0.2896 -0.1459 31.4390 28.9140 -0.2896 -0.1459 TS250 52
53 TS114 31.0610 28.5350 -0.3235 -0.1881 31.4390 29.9240 -0.2896 -0.0335 TS114 53
54 TS102 30.6820 25.8840 -0.3575 -0.4832 38.6360 32.8280 0.3557 0.2898 TS102 54
55 TS257 30.3030 27.5250 -0.3915 -0.3005 34.0910 29.5450 -0.0518 -0.0757 TS257 55
56 TS273 30.3030 27.2730 -0.3915 -0.3286 32.9550 31.1870 -0.1537 0.1071 TS273 56
57 TS001 30.3030 27.2730 -0.3915 -0.3286 31.0610 29.4190 -0.3235 -0.0897 TS001 57
58 TS220 30.3030 26.7680 -0.3915 -0.3848 35.6060 31.6920 0.0840 0.1633 TS220 58
59 TS447 30.3030 26.7680 -0.3915 -0.3848 35.6060 31.6920 0.0840 0.1633 TS447 59
60 TS236 29.9240 29.1670 -0.4254 -0.1178 31.0610 29.4190 -0.3235 -0.0897 TS236 60
61 TS208 29.9240 29.1670 -0.4254 -0.1178 29.9240 29.1670 -0.4254 -0.1178 TS208 61
62 TS173 29.9240 26.1360 -0.4254 -0.4552 32.5760 31.5660 -0.1877 0.1493 TS173 62
63 TS244 29.5450 28.7880 -0.4594 -0.1599 31.8180 28.7880 -0.2556 -0.1599 TS244 63
64 AL285 29.5450 27.7780 -0.4594 -0.2724 32.9550 30.6820 -0.1537 0.0509 AL285 64
65 TS207 29.1670 25.2530 -0.4933 -0.5535 34.3280 29.6720 -0.0306 -0.0615 TS207 65
66 TS215 28.7880 24.3690 -0.5273 -0.6519 53.0300 43.6870 1.6463 1.4986 TS215 66
67 TS080 28.7880 24.3690 -0.5273 -0.6519 48.1060 39.0150 1.2048 0.9785 TS080 67
68 TS119 28.7880 24.3690 -0.5273 -0.6519 48.1060 43.1820 1.2048 1.4424 TS119 68
69 TS055 28.7310 26.1190 -0.5324 -0.4571 34.8480 33.8380 0.0161 0.4022 TS055 69
70 TS409 28.4090 25.1260 -0.5613 -0.5676 49.6210 40.2780 1.3407 1.1191 TS409 70
71 TS319 28.0300 27.5250 -0.5953 -0.3005 28.4090 27.5250 -0.5613 -0.3005 TS319 71
72 TS056 28.0300 27.5250 -0.5953 -0.3005 28.0300 27.5250 -0.5953 -0.3005 TS056 72
73 TS350 28.0300 27.1460 -0.5953 -0.3427 28.0300 27.1460 -0.5953 -0.3427 TS350 73
74 TS002 28.0300 25.1260 -0.5953 -0.5676 30.3030 25.2530 -0.3915 -0.5535 TS002 74
75 TS345 28.0300 24.7470 -0.5953 -0.6098 33.7120 29.2930 -0.0858 -0.1037 TS345 75
76 TS314 27.6520 27.3990 -0.6292 -0.3146 47.3480 41.0350 1.1369 1.2034 TS314 76
77 TS229 26.8940 26.3890 -0.6971 -0.4270 32.1970 27.1460 -0.2216 -0.3427 TS229 77
78 TS269 26.8940 23.3590 -0.6971 -0.7643 31.7160 27.7360 -0.2648 -0.2771 TS269 78
79 TS264 26.5150 21.7170 -0.7311 -0.9471 28.4090 27.0200 -0.5613 -0.3568 TS264 79
80 TS039 26.1360 26.1360 -0.7651 -0.4552 31.7160 27.7360 -0.2648 -0.2771 TS039 80
81 TS086 26.1360 26.1360 -0.7651 -0.4552 29.5450 27.7780 -0.4594 -0.2724 TS086 81
82 TS476 26.1360 23.1060 -0.7651 -0.7925 26.1360 23.1060 -0.7651 -0.7925 TS476 82
83 TS307 26.1360 22.8540 -0.7651 -0.8205 64.0150 56.1870 2.6313 2.8901 TS307 83
84 TS152 25.7580 20.7070 -0.7990 -1.0595 31.7160 27.7360 -0.2648 -0.2771 TS152 84
85 AL396 25.7580 20.2020 -0.7990 -1.1157 35.0750 24.6270 0.0364 -0.6232 AL396 85
86 TS420 24.2540 21.7660 -0.9338 -0.9416 24.2540 21.7660 -0.9338 -0.9416 TS420 86
87 TS471 24.2540 21.7660 -0.9338 -0.9416 24.2540 21.7660 -0.9338 -0.9416 TS471 87
88 TS322 24.2420 21.7170 -0.9349 -0.9471 27.6520 25.6310 -0.6292 -0.5114 TS322 88
89 TS117 24.2420 19.9490 -0.9349 -1.1439 48.1060 44.0660 1.2048 1.5408 TS117 89
90 RANDOM 24.16 21.01 -0.9423 -1.0258 24.16 21.01 -0.9423 -1.0258 RANDOM 90
91 TS171 23.4850 18.3080 -1.0028 -1.3266 23.4850 18.3080 -1.0028 -1.3266 TS171 91
92 TS248 23.1060 21.5910 -1.0368 -0.9611 23.1060 21.5910 -1.0368 -0.9611 TS248 92
93 TS444 22.7610 19.9000 -1.0677 -1.1494 26.1360 24.1160 -0.7651 -0.6800 TS444 93
94 TS328 21.9700 20.9600 -1.1386 -1.0314 21.9700 20.9600 -1.1386 -1.0314 TS328 94
95 TS296 21.5910 21.5910 -1.1726 -0.9611 26.1360 25.3790 -0.7651 -0.5394 TS296 95
96 TS129 21.5910 19.8230 -1.1726 -1.1579 24.2420 19.8230 -0.9349 -1.1579 TS129 96
97 TS289 21.2120 16.4140 -1.2066 -1.5374 21.2120 16.4140 -1.2066 -1.5374 TS289 97
98 TS436 11.7420 11.2370 -2.0557 -2.1137 11.7420 11.2370 -2.0557 -2.1137 TS436 98
99 TS009             -0.9423 -1.0258             -0.9423 -1.0258 TS009 99
100 TS014             -0.9423 -1.0258             -0.9423 -1.0258 TS014 100
101 TS016             -0.9423 -1.0258             -0.9423 -1.0258 TS016 101
102 TS020             -0.9423 -1.0258             -0.9423 -1.0258 TS020 102
103 TS026             -0.9423 -1.0258             -0.9423 -1.0258 TS026 103
104 TS029             -0.9423 -1.0258             -0.9423 -1.0258 TS029 104
105 TS033             -0.9423 -1.0258             -0.9423 -1.0258 TS033 105
106 TS035             -0.9423 -1.0258             -0.9423 -1.0258 TS035 106
107 TS042             -0.9423 -1.0258             -0.9423 -1.0258 TS042 107
108 TS044             -0.9423 -1.0258             -0.9423 -1.0258 TS044 108
109 TS045             -0.9423 -1.0258             -0.9423 -1.0258 TS045 109
110 TS061             -0.9423 -1.0258             -0.9423 -1.0258 TS061 110
111 TS074             -0.9423 -1.0258             -0.9423 -1.0258 TS074 111
112 TS083             -0.9423 -1.0258             -0.9423 -1.0258 TS083 112
113 TS084             -0.9423 -1.0258             -0.9423 -1.0258 TS084 113
114 TS096             -0.9423 -1.0258             -0.9423 -1.0258 TS096 114
115 TS105             -0.9423 -1.0258             -0.9423 -1.0258 TS105 115
116 TS110             -0.9423 -1.0258             -0.9423 -1.0258 TS110 116
117 TS147             -0.9423 -1.0258             -0.9423 -1.0258 TS147 117
118 TS149             -0.9423 -1.0258             -0.9423 -1.0258 TS149 118
119 TS150             -0.9423 -1.0258             -0.9423 -1.0258 TS150 119
120 TS153             -0.9423 -1.0258             -0.9423 -1.0258 TS153 120
121 TS154             -0.9423 -1.0258             -0.9423 -1.0258 TS154 121
122 TS160             -0.9423 -1.0258             -0.9423 -1.0258 TS160 122
123 TS170             -0.9423 -1.0258             -0.9423 -1.0258 TS170 123
124 TS172             -0.9423 -1.0258             -0.9423 -1.0258 TS172 124
125 TS178             -0.9423 -1.0258             -0.9423 -1.0258 TS178 125
126 TS180             -0.9423 -1.0258             -0.9423 -1.0258 TS180 126
127 TS182             -0.9423 -1.0258             -0.9423 -1.0258 TS182 127
128 TS184             -0.9423 -1.0258             -0.9423 -1.0258 TS184 128
129 TS186             -0.9423 -1.0258             -0.9423 -1.0258 TS186 129
130 TS189             -0.9423 -1.0258             -0.9423 -1.0258 TS189 130
131 TS192             -0.9423 -1.0258             -0.9423 -1.0258 TS192 131
132 TS199             -0.9423 -1.0258             -0.9423 -1.0258 TS199 132
133 TS200             -0.9423 -1.0258             -0.9423 -1.0258 TS200 133
134 TS206             -0.9423 -1.0258             -0.9423 -1.0258 TS206 134
135 TS228             -0.9423 -1.0258             -0.9423 -1.0258 TS228 135
136 TS240             -0.9423 -1.0258             -0.9423 -1.0258 TS240 136
137 TS242             -0.9423 -1.0258             -0.9423 -1.0258 TS242 137
138 TS254             -0.9423 -1.0258             -0.9423 -1.0258 TS254 138
139 TS261             -0.9423 -1.0258             -0.9423 -1.0258 TS261 139
140 TS263             -0.9423 -1.0258             -0.9423 -1.0258 TS263 140
141 TS278             -0.9423 -1.0258             -0.9423 -1.0258 TS278 141
142 TS279             -0.9423 -1.0258             -0.9423 -1.0258 TS279 142
143 TS282             -0.9423 -1.0258             -0.9423 -1.0258 TS282 143
144 TS295             -0.9423 -1.0258             -0.9423 -1.0258 TS295 144
145 TS297             -0.9423 -1.0258             -0.9423 -1.0258 TS297 145
146 TS299             -0.9423 -1.0258             -0.9423 -1.0258 TS299 146
147 TS300             -0.9423 -1.0258             -0.9423 -1.0258 TS300 147
148 TS301             -0.9423 -1.0258             -0.9423 -1.0258 TS301 148
149 TS311             -0.9423 -1.0258             -0.9423 -1.0258 TS311 149
150 TS316             -0.9423 -1.0258             -0.9423 -1.0258 TS316 150
151 TS324             -0.9423 -1.0258             -0.9423 -1.0258 TS324 151
152 TS330             -0.9423 -1.0258             -0.9423 -1.0258 TS330 152
153 TS331             -0.9423 -1.0258             -0.9423 -1.0258 TS331 153
154 TS333             -0.9423 -1.0258             -0.9423 -1.0258 TS333 154
155 TS336             -0.9423 -1.0258             -0.9423 -1.0258 TS336 155
156 TS347             -0.9423 -1.0258             -0.9423 -1.0258 TS347 156
157 TS353             -0.9423 -1.0258             -0.9423 -1.0258 TS353 157
158 TS358             -0.9423 -1.0258             -0.9423 -1.0258 TS358 158
159 TS360             -0.9423 -1.0258             -0.9423 -1.0258 TS360 159
160 TS362             -0.9423 -1.0258             -0.9423 -1.0258 TS362 160
161 TS365             -0.9423 -1.0258             -0.9423 -1.0258 TS365 161
162 TS373             -0.9423 -1.0258             -0.9423 -1.0258 TS373 162
163 TS382             -0.9423 -1.0258             -0.9423 -1.0258 TS382 163
164 TS386             -0.9423 -1.0258             -0.9423 -1.0258 TS386 164
165 TS399             -0.9423 -1.0258             -0.9423 -1.0258 TS399 165
166 TS400             -0.9423 -1.0258             -0.9423 -1.0258 TS400 166
167 TS402             -0.9423 -1.0258             -0.9423 -1.0258 TS402 167
168 TS403             -0.9423 -1.0258             -0.9423 -1.0258 TS403 168
169 TS408             -0.9423 -1.0258             -0.9423 -1.0258 TS408 169
170 TS423             -0.9423 -1.0258             -0.9423 -1.0258 TS423 170
171 TS424             -0.9423 -1.0258             -0.9423 -1.0258 TS424 171
172 TS433             -0.9423 -1.0258             -0.9423 -1.0258 TS433 172
173 TS439             -0.9423 -1.0258             -0.9423 -1.0258 TS439 173
174 TS450             -0.9423 -1.0258             -0.9423 -1.0258 TS450 174
175 TS458             -0.9423 -1.0258             -0.9423 -1.0258 TS458 175
176 TS461             -0.9423 -1.0258             -0.9423 -1.0258 TS461 176
177 TS477             -0.9423 -1.0258             -0.9423 -1.0258 TS477 177
178 TS484             -0.9423 -1.0258             -0.9423 -1.0258 TS484 178