T0520

Targets
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519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
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619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0520

3MR7 from Silicibacter pomeroyi

Target type: Human/Server

Target sequence:

>T0520 3MR7, Silicibacter pomeroyi, 189 residues
SNAERRLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLEDGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDADRDQSHDPQPSHVQH

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3mr7

Jmol of T0520 structure : 3mr7

PyMOL of T0520

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0520A-1-1712-174
T0520B-1-1702-173
T0520C0-1713-174

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Adenylyl and guanylyl cyclase catalytic domain, Ferredoxin-like fold with sheet order: 2314576.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2w01_A | PyMOL of 2w01 A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain (PF00211).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0520 T0520 T0520 T0520
First score First Z-score Best score Best Z-score
1 TS429 79.2150 72.6260 0.9590 0.9120 79.2150 73.8860 0.9590 1.0964 TS429 1
2 TS295 78.9240 74.9520 0.9118 1.2524 78.9240 74.9520 0.9118 1.2524 TS295 2
3 TS016 78.6340 71.9480 0.8648 0.8128 78.9240 72.0450 0.9118 0.8270 TS016 3
4 TS104 78.4880 70.1550 0.8411 0.5505 78.4880 70.1550 0.8411 0.5505 TS104 4
5 TS449 78.4880 65.6980 0.8411 -0.1017 78.4880 65.6980 0.8411 -0.1017 TS449 5
6 TS453 78.4880 65.6980 0.8411 -0.1017 78.4880 65.6980 0.8411 -0.1017 TS453 6
7 TS346 78.4880 65.6980 0.8411 -0.1017 78.4880 65.6980 0.8411 -0.1017 TS346 7
8 TS436 78.1980 72.4810 0.7941 0.8908 78.7790 72.4810 0.8883 0.8908 TS436 8
9 TS080 78.1980 71.5120 0.7941 0.7490 78.1980 71.5120 0.7941 0.7490 TS080 9
10 TS215 78.0520 73.2070 0.7704 0.9971 78.4880 73.2070 0.8411 0.9971 TS215 10
11 TS324 77.9070 73.8370 0.7469 1.0892 78.1980 73.8370 0.7941 1.0892 TS324 11
12 TS114 77.9070 72.8680 0.7469 0.9475 78.0520 73.2560 0.7704 1.0042 TS114 12
13 TS386 77.9070 72.7710 0.7469 0.9333 78.1980 73.1590 0.7941 0.9900 TS386 13
14 TS400 77.9070 72.4810 0.7469 0.8908 79.5060 73.6990 1.0062 1.0690 TS400 14
15 TS127 77.9070 71.8020 0.7469 0.7915 78.6340 73.5950 0.8648 1.0538 TS127 15
16 TS096 77.9070 71.4150 0.7469 0.7348 77.9070 71.4150 0.7469 0.7348 TS096 16
17 TS110 77.9070 71.2210 0.7469 0.7065 77.9070 71.2210 0.7469 0.7065 TS110 17
18 TS253 77.9070 70.8330 0.7469 0.6497 77.9070 70.8330 0.7469 0.6497 TS253 18
19 TS481 77.9070 70.4460 0.7469 0.5931 78.9240 71.7050 0.9118 0.7773 TS481 19
20 TS236 77.7620 72.3350 0.7234 0.8695 78.1980 72.7710 0.7941 0.9333 TS236 20
21 TS418 77.7620 71.9480 0.7234 0.8128 77.7620 72.3350 0.7234 0.8695 TS418 21
22 TS228 77.7620 71.9480 0.7234 0.8128 79.2150 73.5950 0.9590 1.0538 TS228 22
23 TS002 77.6160 72.7710 0.6997 0.9333 78.3430 73.9340 0.8176 1.1034 TS002 23
24 TS077 77.6160 72.6740 0.6997 0.9191 77.6160 72.6740 0.6997 0.9191 TS077 24
25 TS286 77.6160 72.6740 0.6997 0.9191 77.6160 72.6740 0.6997 0.9191 TS286 25
26 TS037 77.6160 72.2870 0.6997 0.8624 77.6160 72.2870 0.6997 0.8624 TS037 26
27 TS407 77.4710 72.7230 0.6761 0.9262 77.7620 72.7710 0.7234 0.9333 TS407 27
28 TS102 77.4710 72.3350 0.6761 0.8695 78.3430 72.3350 0.8176 0.8695 TS102 28
29 TS047 77.4710 71.5600 0.6761 0.7561 77.4710 71.5600 0.6761 0.7561 TS047 29
30 TS361 77.4710 68.6530 0.6761 0.3307 77.7620 72.8200 0.7234 0.9404 TS361 30
31 TS113 77.4710 67.5870 0.6761 0.1747 77.7620 71.5600 0.7234 0.7561 TS113 31
32 TS214 77.3260 69.7670 0.6526 0.4937 78.3430 71.5120 0.8176 0.7490 TS214 32
33 TS186 77.3260 69.7670 0.6526 0.4937 78.3430 71.5120 0.8176 0.7490 TS186 33
34 TS170 77.2190 72.3870 0.6353 0.8771 77.2190 72.3870 0.6353 0.8771 TS170 34
35 TS094 77.1800 72.0450 0.6289 0.8270 78.1980 72.7710 0.7941 0.9333 TS094 35
36 TS360 77.1800 71.8510 0.6289 0.7986 77.1800 71.8510 0.6289 0.7986 TS360 36
37 TS490 77.1800 70.8820 0.6289 0.6569 77.4570 71.8990 0.6739 0.8057 TS490 37
38 TS423 77.1800 69.8160 0.6289 0.5009 77.1800 69.8160 0.6289 0.5009 TS423 38
39 TS088 77.1800 67.3930 0.6289 0.1463 77.6160 72.0930 0.6997 0.8341 TS088 39
40 TS119 77.0350 72.2870 0.6054 0.8624 77.7460 72.9650 0.7208 0.9616 TS119 40
41 TS470 77.0350 69.4770 0.6054 0.4513 78.1980 72.7710 0.7941 0.9333 TS470 41
42 TS399 77.0350 69.4770 0.6054 0.4513 78.0520 73.2070 0.7704 0.9971 TS399 42
43 TS428 77.0350 69.4770 0.6054 0.4513 77.6160 71.7050 0.6997 0.7773 TS428 43
44 TS242 76.7440 68.5080 0.5582 0.3095 77.0350 69.1860 0.6054 0.4087 TS242 44
45 TS056 76.5990 72.2380 0.5347 0.8553 77.7460 72.5430 0.7208 0.8999 TS056 45
46 TS033 76.5990 69.3310 0.5347 0.4299 76.5990 69.3310 0.5347 0.4299 TS033 46
47 TS074 76.5990 66.0370 0.5347 -0.0521 76.5990 66.0370 0.5347 -0.0521 TS074 47
48 TS020 76.5990 64.9710 0.5347 -0.2080 76.5990 69.5250 0.5347 0.4583 TS020 48
49 TS018 76.4790 71.2520 0.5152 0.7110 76.4790 71.2520 0.5152 0.7110 TS018 49
50 TS365 76.4530 70.7360 0.5110 0.6355 76.4530 70.7360 0.5110 0.6355 TS365 50
51 TS452 76.4530 70.7360 0.5110 0.6355 76.5990 70.9790 0.5347 0.6711 TS452 51
52 TS408 76.3080 69.5250 0.4875 0.4583 76.3080 69.5250 0.4875 0.4583 TS408 52
53 TS366 76.1630 69.8640 0.4640 0.5079 76.1630 71.1240 0.4640 0.6923 TS366 53
54 TS147 76.1630 68.3140 0.4640 0.2811 76.7440 68.3140 0.5582 0.2811 TS147 54
55 TS174 76.1630 67.0540 0.4640 0.0967 76.1630 67.0540 0.4640 0.0967 TS174 55
56 TS307 76.0170 68.8470 0.4403 0.3591 76.0170 70.3000 0.4403 0.5717 TS307 56
57 TS476 75.8880 70.7590 0.4194 0.6389 75.8880 70.7590 0.4194 0.6389 TS476 57
58 TS420 75.8880 70.7590 0.4194 0.6389 76.1630 71.0760 0.4640 0.6852 TS420 58
59 TS171 75.8880 70.7590 0.4194 0.6389 75.8880 70.7590 0.4194 0.6389 TS171 59
60 TS471 75.8880 70.7590 0.4194 0.6389 76.1630 71.0760 0.4640 0.6852 TS471 60
61 TS172 75.8720 70.6400 0.4168 0.6215 81.0650 76.3310 1.2591 1.4542 TS172 61
62 TS380 75.8720 68.4110 0.4168 0.2953 75.8720 69.9610 0.4168 0.5221 TS380 62
63 TS207 75.8670 66.7150 0.4160 0.0471 77.4710 72.2380 0.6761 0.8553 TS207 63
64 TS035 75.8670 66.5220 0.4160 0.0189 75.8670 66.5220 0.4160 0.0189 TS035 64
65 TS045 75.7270 70.4940 0.3933 0.6001 75.7270 70.4940 0.3933 0.6001 TS045 65
66 TS001 75.5920 69.3290 0.3714 0.4296 75.8720 71.0060 0.4168 0.6750 TS001 66
67 TS063 75.4360 68.1690 0.3461 0.2599 76.5990 71.1240 0.5347 0.6923 TS063 67
68 TS304 75.4360 66.9090 0.3461 0.0755 75.4360 68.4110 0.3461 0.2953 TS304 68
69 TS402 75.1450 68.9440 0.2989 0.3733 75.5810 68.9440 0.3696 0.3733 TS402 69
70 TS275 74.8550 64.1960 0.2518 -0.3214 76.5990 70.4940 0.5347 0.6001 TS275 70
71 TS297 74.7110 68.9310 0.2285 0.3714 76.0170 69.8160 0.4403 0.5009 TS297 71
72 TS213 74.7090 70.2520 0.2281 0.5647 76.8900 70.9790 0.5819 0.6711 TS213 72
73 TS458 74.7090 64.0500 0.2281 -0.3428 77.4710 72.3350 0.6761 0.8695 TS458 73
74 TS208 74.5640 68.2660 0.2046 0.2741 77.0350 71.7050 0.6054 0.7773 TS208 74
75 TS218 74.5560 69.2310 0.2033 0.4153 74.7040 70.9790 0.2273 0.6711 TS218 75
76 TS173 74.4080 69.2800 0.1793 0.4225 77.9070 73.8370 0.7469 1.0892 TS173 76
77 TS184 74.2770 67.9190 0.1581 0.2233 74.2770 67.9190 0.1581 0.2233 TS184 77
78 TS457 74.2730 67.2000 0.1574 0.1181 75.8720 70.5430 0.4168 0.6073 TS457 78
79 TS319 74.1280 70.2520 0.1339 0.5647 76.0170 71.0060 0.4403 0.6750 TS319 79
80 TS273 74.1280 70.2520 0.1339 0.5647 76.0170 71.0060 0.4403 0.6750 TS273 80
81 TS409 74.1280 65.4070 0.1339 -0.1442 74.5640 68.7500 0.2046 0.3449 TS409 81
82 TS192 73.9640 69.5270 0.1073 0.4586 73.9640 69.5270 0.1073 0.4586 TS192 82
83 TS435 73.8370 66.2790 0.0867 -0.0167 77.6160 72.6740 0.6997 0.9191 TS435 83
84 TS248 73.6920 66.1340 0.0632 -0.0379 73.6920 66.1340 0.0632 -0.0379 TS248 84
85 TS244 73.6690 68.6390 0.0594 0.3287 73.6690 68.6390 0.0594 0.3287 TS244 85
86 AL396 73.6690 68.5400 0.0594 0.3142 73.6690 68.5400 0.0594 0.3142 AL396 86
87 TS028 73.5470 66.5700 0.0396 0.0259 76.0120 69.9130 0.4395 0.5151 TS028 87
88 TS061 73.5470 65.7950 0.0396 -0.0875 73.8370 66.1340 0.0867 -0.0379 TS061 88
89 TS300 73.5210 68.1950 0.0354 0.2637 78.4880 72.5430 0.8411 0.8999 TS300 89
90 TS103 73.4010 69.2340 0.0160 0.4157 73.6920 69.2340 0.0632 0.4157 TS103 90
91 TS461 73.2560 67.1510 -0.0076 0.1109 75.0000 69.4770 0.2753 0.4513 TS461 91
92 TS345 73.2560 64.8260 -0.0076 -0.2293 77.9070 73.0620 0.7469 0.9758 TS345 92
93 TS289 73.2250 62.2780 -0.0126 -0.6021 73.2250 62.2780 -0.0126 -0.6021 TS289 93
94 TS117 73.0770 68.5400 -0.0366 0.3142 74.2600 70.4140 0.1553 0.5884 TS117 94
95 TS278 72.9650 68.7020 -0.0548 0.3379 72.9650 68.7020 -0.0548 0.3379 TS278 95
96 TS419 72.8320 63.6800 -0.0763 -0.3969 76.1630 69.2310 0.4640 0.4153 TS419 96
97 TS301 72.7810 68.9350 -0.0846 0.3720 72.7810 68.9350 -0.0846 0.3720 TS301 97
98 TS166 72.6740 62.8880 -0.1020 -0.5128 77.1800 72.3350 0.6289 0.8695 TS166 98
99 TS302 72.3840 62.9840 -0.1490 -0.4988 73.8370 69.5740 0.0867 0.4655 TS302 99
100 TS142 72.3840 62.9840 -0.1490 -0.4988 73.8370 69.5740 0.0867 0.4655 TS142 100
101 TS165 72.2380 68.2660 -0.1727 0.2741 76.1630 70.0100 0.4640 0.5293 TS165 101
102 TS439 72.1890 63.8070 -0.1806 -0.3784 72.1890 63.8070 -0.1806 -0.3784 TS439 102
103 TS395 71.9480 65.2620 -0.2197 -0.1655 77.3670 70.6610 0.6593 0.6245 TS395 103
104 TS276 71.6570 60.9980 -0.2669 -0.7894 71.6570 60.9980 -0.2669 -0.7894 TS276 104
105 TS477 71.6570 60.9980 -0.2669 -0.7894 77.6160 72.6740 0.6997 0.9191 TS477 105
106 TS296 71.0760 64.6800 -0.3612 -0.2506 75.0000 69.1380 0.2753 0.4017 TS296 106
107 TS299 70.7100 62.6230 -0.4205 -0.5516 72.9290 67.3080 -0.0606 0.1339 TS299 107
108 TS245 70.6400 63.3720 -0.4319 -0.4420 70.6400 63.3720 -0.4319 -0.4420 TS245 108
109 TS282 70.6400 63.3720 -0.4319 -0.4420 70.6400 63.3720 -0.4319 -0.4420 TS282 109
110 TS391 70.3490 63.1780 -0.4791 -0.4704 70.3490 63.1780 -0.4791 -0.4704 TS391 110
111 TS026 70.2030 59.7380 -0.5028 -0.9737 76.3080 70.5910 0.4875 0.6143 TS026 111
112 TS029 70.0580 60.7560 -0.5263 -0.8248 70.0580 60.7560 -0.5263 -0.8248 TS029 112
113 TS311 69.7670 61.5310 -0.5735 -0.7114 76.4530 71.0270 0.5110 0.6781 TS311 113
114 TS382 69.6220 64.5830 -0.5970 -0.2648 71.2210 64.5830 -0.3377 -0.2648 TS382 114
115 TS291 69.6220 63.5170 -0.5970 -0.4208 76.0170 67.3930 0.4403 0.1463 TS291 115
116 TS330 69.3310 61.0950 -0.6442 -0.7752 69.3310 61.0950 -0.6442 -0.7752 TS330 116
117 TS450 69.0830 63.5110 -0.6845 -0.4217 69.0830 63.5110 -0.6845 -0.4217 TS450 117
118 TS189 68.7500 58.6720 -0.7385 -1.1297 70.0580 58.6720 -0.5263 -1.1297 TS189 118
119 TS321 68.3430 62.8210 -0.8045 -0.5226 71.5120 65.3100 -0.2905 -0.1584 TS321 119
120 TS403 68.0230 60.6590 -0.8564 -0.8390 69.1860 62.4030 -0.6677 -0.5838 TS403 120
121 TS314 67.0060 57.0250 -1.0214 -1.3707 67.0060 57.0250 -1.0214 -1.3707 TS314 121
122 TS353 66.8600 61.5310 -1.0450 -0.7114 71.8020 65.9880 -0.2434 -0.0592 TS353 122
123 AL285 65.5520 58.5760 -1.2572 -1.1438 73.1100 65.8480 -0.0312 -0.0797 AL285 123
124 TS250 62.6450 55.8620 -1.7288 -1.5409 63.0810 57.3640 -1.6580 -1.3211 TS250 124
125 TS083 62.2780 53.6000 -1.7883 -1.8718 62.2780 53.6000 -1.7883 -1.8718 TS083 125
126 TS484 61.3370 52.4220 -1.9409 -2.0442 63.3720 56.1050 -1.6108 -1.5053 TS484 126
127 TS316 60.0590 52.7610 -2.1482 -1.9946 63.7570 56.5090 -1.5484 -1.4462 TS316 127
128 TS055 56.2130 48.0280 -2.7721 -2.6871 65.8280 58.7280 -1.2124 -1.1215 TS055 128
129 TS129 54.4380 44.1810 -3.0600 -3.2500 54.8820 45.2170 -2.9880 -3.0985 TS129 129
130 TS206 53.4880 43.6050 -3.2141 -3.3343 53.4880 43.6050 -3.2141 -3.3343 TS206 130
131 TS347 42.4560 39.2010 -5.0036 -3.9787 71.5120 63.7570 -0.2905 -0.3857 TS347 131
132 TS358 42.4560 39.2010 -5.0036 -3.9787 80.8140 75.4840 1.2184 1.3302 TS358 132
133 TS153 42.0060 34.1570 -5.0766 -4.7168 42.0060 34.1570 -5.0766 -4.7168 TS153 133
134 TS042 32.1010 24.6060 -6.6832 -6.1143 63.7570 56.5090 -1.5484 -1.4462 TS042 134
135 TS014 30.2330 27.8100 -6.9862 -5.6454 30.2330 27.8100 -6.9862 -5.6454 TS014 135
136 TS084 29.0700 24.6120 -7.1749 -6.1134 30.7690 24.8030 -6.8993 -6.0854 TS084 136
137 TS279 28.0520 24.4670 -7.3400 -6.1346 65.6980 60.3680 -1.2335 -0.8816 TS279 137
138 TS355 20.2030 17.0060 -8.6132 -7.2263 20.5620 19.2340 -8.5550 -6.9003 TS355 138
139 TS350 19.6530 18.4970 -8.7024 -7.0081 31.2500 25.4360 -6.8213 -5.9928 TS350 139
140 TS257 18.4970 15.8960 -8.8899 -7.3887 22.3990 20.6110 -8.2570 -6.6988 TS257 140
141 TS373 17.8990 16.5190 -8.9869 -7.2976 23.2560 18.5930 -8.1180 -6.9941 TS373 141
142 TS229 16.4200 13.6590 -9.2268 -7.7160 16.8640 14.7440 -9.1548 -7.5573 TS229 142
143 TS264 14.3060 12.7650 -9.5697 -7.8468 15.2370 13.5110 -9.4187 -7.7377 TS264 143
144 TS333 13.6630 12.5970 -9.6740 -7.8714 66.7150 58.1400 -1.0686 -1.2076 TS333 144
145 RANDOM 13.35 11.55 -9.7248 -8.0246 13.35 11.55 -9.7248 -8.0246 RANDOM 145
146 TS009             -9.7248 -8.0246             -9.7248 -8.0246 TS009 146
147 TS039             -9.7248 -8.0246             -9.7248 -8.0246 TS039 147
148 TS044             -9.7248 -8.0246             -9.7248 -8.0246 TS044 148
149 TS060             -9.7248 -8.0246             -9.7248 -8.0246 TS060 149
150 TS075             -9.7248 -8.0246             -9.7248 -8.0246 TS075 150
151 TS086             -9.7248 -8.0246             -9.7248 -8.0246 TS086 151
152 TS105             -9.7248 -8.0246             -9.7248 -8.0246 TS105 152
153 TS140             -9.7248 -8.0246             -9.7248 -8.0246 TS140 153
154 TS149             -9.7248 -8.0246             -9.7248 -8.0246 TS149 154
155 TS150             -9.7248 -8.0246             -9.7248 -8.0246 TS150 155
156 TS152             -9.7248 -8.0246             -9.7248 -8.0246 TS152 156
157 TS154             -9.7248 -8.0246             -9.7248 -8.0246 TS154 157
158 TS160             -9.7248 -8.0246             -9.7248 -8.0246 TS160 158
159 TS178             -9.7248 -8.0246             -9.7248 -8.0246 TS178 159
160 TS180             -9.7248 -8.0246             -9.7248 -8.0246 TS180 160
161 TS182             -9.7248 -8.0246             -9.7248 -8.0246 TS182 161
162 TS199             -9.7248 -8.0246             -9.7248 -8.0246 TS199 162
163 TS200             -9.7248 -8.0246             -9.7248 -8.0246 TS200 163
164 TS220             -9.7248 -8.0246             -9.7248 -8.0246 TS220 164
165 TS240             -9.7248 -8.0246             -9.7248 -8.0246 TS240 165
166 TS254             -9.7248 -8.0246             -9.7248 -8.0246 TS254 166
167 TS261             -9.7248 -8.0246             -9.7248 -8.0246 TS261 167
168 TS263             -9.7248 -8.0246             -9.7248 -8.0246 TS263 168
169 TS269             -9.7248 -8.0246             -9.7248 -8.0246 TS269 169
170 TS322             -9.7248 -8.0246             -9.7248 -8.0246 TS322 170
171 TS328             -9.7248 -8.0246             -9.7248 -8.0246 TS328 171
172 TS331             -9.7248 -8.0246             -9.7248 -8.0246 TS331 172
173 TS336             -9.7248 -8.0246             -9.7248 -8.0246 TS336 173
174 TS362             -9.7248 -8.0246             -9.7248 -8.0246 TS362 174
175 TS424             -9.7248 -8.0246             -9.7248 -8.0246 TS424 175
176 TS433             -9.7248 -8.0246             -9.7248 -8.0246 TS433 176
177 TS444             -9.7248 -8.0246             -9.7248 -8.0246 TS444 177
178 TS447             -9.7248 -8.0246             -9.7248 -8.0246 TS447 178