T0572

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0572

SuR18C from unknown species

Target type: Server only

Target sequence:

>T0572 SuR18C, unknown species, 93 residues
MKISLRKLSKSVPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTLELKAEGVTVQPSTVKVNLKVTQK

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2kxy

Jmol of T0572 structure : 2kxy

PyMOL of T0572

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0572A1-1005-93

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

YBBR family protein, all beta, subclass of Ig-like fold?

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3lyw_A | PyMOL of 3lyw A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

YbbR-like protein PF07949.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0572 T0572 T0572 T0572
First score First Z-score Best score Best Z-score
1 TS380 58.4270 47.1910 1.5663 1.6206 58.4270 47.1910 1.5663 1.6206 TS380 1
2 TS094 56.7420 42.8840 1.4337 1.1734 58.4270 47.1910 1.5663 1.6206 TS094 2
3 TS428 56.7420 42.8840 1.4337 1.1734 56.7420 47.1910 1.4337 1.6206 TS428 3
4 TS113 55.3370 42.4160 1.3232 1.1248 55.3370 42.4160 1.3232 1.1248 TS113 4
5 TS457 55.3370 41.1050 1.3232 0.9887 57.0220 44.1010 1.4558 1.2998 TS457 5
6 TS104 54.7750 43.9140 1.2790 1.2804 54.7750 43.9140 1.2790 1.2804 TS104 6
7 TS037 54.7750 42.7900 1.2790 1.1637 58.1460 47.8460 1.5442 1.6887 TS037 7
8 TS215 53.3710 38.7640 1.1685 0.7456 53.3710 39.6070 1.1685 0.8332 TS215 8
9 TS080 53.3710 38.7640 1.1685 0.7456 53.3710 41.6670 1.1685 1.0471 TS080 9
10 TS119 53.3710 38.7640 1.1685 0.7456 53.3710 41.7600 1.1685 1.0567 TS119 10
11 TS002 53.3710 38.7640 1.1685 0.7456 53.3710 38.9510 1.1685 0.7650 TS002 11
12 TS088 53.3710 37.6400 1.1685 0.6289 55.0560 43.2580 1.3011 1.2123 TS088 12
13 TS490 53.3710 37.0790 1.1685 0.5707 53.3710 37.0790 1.1685 0.5707 TS490 13
14 TS470 53.0900 39.4190 1.1464 0.8136 53.0900 39.4190 1.1464 0.8136 TS470 14
15 TS060 53.0900 39.4190 1.1464 0.8136 53.0900 40.4490 1.1464 0.9206 TS060 15
16 TS452 52.8090 38.3900 1.1243 0.7068 53.0900 39.4190 1.1464 0.8136 TS452 16
17 TS208 52.5280 42.9780 1.1022 1.1832 52.5280 42.9780 1.1022 1.1832 TS208 17
18 TS218 51.9660 43.3520 1.0579 1.2220 52.2470 44.0070 1.0800 1.2900 TS218 18
19 TS429 51.4040 37.6400 1.0137 0.6289 51.4040 40.9180 1.0137 0.9693 TS429 19
20 TS420 51.1240 43.4460 0.9917 1.2318 51.1240 43.4460 0.9917 1.2318 TS420 20
21 TS319 50.8430 42.4160 0.9696 1.1248 54.2130 45.5990 1.2347 1.4553 TS319 21
22 TS245 50.5620 42.8840 0.9475 1.1734 50.5620 42.8840 0.9475 1.1734 TS245 22
23 TS361 50.2810 42.0410 0.9253 1.0859 51.6850 42.6030 1.0358 1.1443 TS361 23
24 TS449 50.0000 37.0790 0.9032 0.5707 50.0000 37.0790 0.9032 0.5707 TS449 24
25 TS453 50.0000 37.0790 0.9032 0.5707 50.0000 37.0790 0.9032 0.5707 TS453 25
26 TS346 50.0000 37.0790 0.9032 0.5707 50.0000 37.0790 0.9032 0.5707 TS346 26
27 TS028 49.7190 39.9810 0.8811 0.8720 52.5280 39.9810 1.1022 0.8720 TS028 27
28 TS407 49.4380 44.0070 0.8590 1.2900 53.3710 44.0070 1.1685 1.2900 TS407 28
29 TS302 48.5960 42.7900 0.7928 1.1637 48.8760 45.3180 0.8148 1.4262 TS302 29
30 TS142 48.5960 42.7900 0.7928 1.1637 48.8760 45.3180 0.8148 1.4262 TS142 30
31 TS220 48.5960 42.7900 0.7928 1.1637 48.5960 42.7900 0.7928 1.1637 TS220 31
32 TS447 48.5960 42.7900 0.7928 1.1637 48.5960 42.7900 0.7928 1.1637 TS447 32
33 TS174 48.5960 35.3000 0.7928 0.3860 48.5960 35.3000 0.7928 0.3860 TS174 33
34 TS409 48.0340 42.0410 0.7485 1.0859 48.0340 42.0410 0.7485 1.0859 TS409 34
35 TS077 47.7530 40.2620 0.7264 0.9012 48.5960 40.2620 0.7928 0.9012 TS077 35
36 TS435 47.7530 40.2620 0.7264 0.9012 48.8760 44.9440 0.8148 1.3873 TS435 36
37 TS276 47.7530 39.8880 0.7264 0.8623 50.0000 43.6330 0.9032 1.2512 TS276 37
38 TS286 47.7530 39.8880 0.7264 0.8623 50.0000 43.6330 0.9032 1.2512 TS286 38
39 TS391 47.7530 37.8280 0.7264 0.6484 47.7530 37.8280 0.7264 0.6484 TS391 39
40 TS103 47.7530 34.6440 0.7264 0.3178 47.7530 34.6440 0.7264 0.3178 TS103 40
41 TS171 47.1910 40.8240 0.6822 0.9595 47.1910 40.8240 0.6822 0.9595 TS171 41
42 AL285 46.9100 40.1690 0.6601 0.8915 51.1240 44.9440 0.9917 1.3873 AL285 42
43 TS291 46.6290 41.5730 0.6380 1.0373 47.1910 41.5730 0.6822 1.0373 TS291 43
44 TS419 46.6290 38.0150 0.6380 0.6679 50.5620 41.1990 0.9475 0.9985 TS419 44
45 TS166 46.6290 38.0150 0.6380 0.6679 50.5620 41.1990 0.9475 0.9985 TS166 45
46 TS127 46.6290 37.6400 0.6380 0.6289 46.6290 39.9810 0.6380 0.8720 TS127 46
47 TS056 46.0670 38.9510 0.5938 0.7650 51.1240 46.0670 0.9917 1.5039 TS056 47
48 TS047 46.0670 34.0820 0.5938 0.2595 46.0670 34.0820 0.5938 0.2595 TS047 48
49 TS273 45.7870 37.3600 0.5717 0.5999 45.7870 37.3600 0.5717 0.5999 TS273 49
50 TS366 45.5060 34.2700 0.5496 0.2790 50.8430 45.4120 0.9696 1.4359 TS366 50
51 TS063 45.5060 34.2700 0.5496 0.2790 50.8430 45.4120 0.9696 1.4359 TS063 51
52 TS165 44.9440 38.3900 0.5054 0.7068 50.0000 41.5730 0.9032 1.0373 TS165 52
53 TS275 44.3820 37.4530 0.4612 0.6095 48.0340 40.7300 0.7485 0.9498 TS275 53
54 TS476 44.3820 35.2060 0.4612 0.3762 44.3820 38.5770 0.4612 0.7262 TS476 54
55 TS114 44.1010 39.0450 0.4391 0.7748 44.1010 39.6070 0.4391 0.8332 TS114 55
56 TS236 43.8200 39.5130 0.4170 0.8234 44.6630 40.1690 0.4833 0.8915 TS236 56
57 TS102 43.8200 33.3330 0.4170 0.1817 44.1010 34.5510 0.4391 0.3082 TS102 57
58 TS018 43.5390 37.1720 0.3949 0.5803 43.5390 37.1720 0.3949 0.5803 TS018 58
59 TS395 43.2580 36.8910 0.3728 0.5512 50.2810 44.6630 0.9253 1.3581 TS395 59
60 AL396 42.4160 37.7340 0.3065 0.6387 44.3820 37.7340 0.4612 0.6387 AL396 60
61 TS117 41.8540 36.9850 0.2623 0.5609 42.4160 37.1720 0.3065 0.5803 TS117 61
62 TS173 41.5730 35.0190 0.2402 0.3568 42.4160 35.3000 0.3065 0.3860 TS173 62
63 TS207 41.2920 31.9290 0.2181 0.0359 41.2920 31.9290 0.2181 0.0359 TS207 63
64 TS129 39.8880 33.0520 0.1076 0.1525 46.0670 36.8910 0.5938 0.5512 TS129 64
65 TS282 36.2360 30.0560 -0.1798 -0.1586 36.2360 30.0560 -0.1798 -0.1586 TS282 65
66 TS253 35.6740 30.6180 -0.2240 -0.1002 51.9660 37.3600 1.0579 0.5999 TS253 66
67 TS471 33.1460 30.5240 -0.4229 -0.1100 33.1460 30.5240 -0.4229 -0.1100 TS471 67
68 TS321 32.8650 27.0600 -0.4450 -0.4696 47.4720 40.4490 0.7043 0.9206 TS321 68
69 TS304 32.3030 27.9960 -0.4892 -0.3724 32.3030 27.9960 -0.4892 -0.3724 TS304 69
70 TS307 30.6180 23.8760 -0.6218 -0.8002 30.6180 26.9660 -0.6218 -0.4794 TS307 70
71 TS350 25.0000 21.4420 -1.0639 -1.0530 25.0000 21.6290 -1.0639 -1.0336 TS350 71
72 TS481 24.4380 22.4720 -1.1081 -0.9460 27.5280 26.9660 -0.8650 -0.4794 TS481 72
73 TS244 24.1570 20.7870 -1.1302 -1.1210 46.9100 37.7340 0.6601 0.6387 TS244 73
74 TS355 23.8760 22.9400 -1.1523 -0.8974 24.7190 22.9400 -1.0860 -0.8974 TS355 74
75 TS055 23.3150 20.8800 -1.1964 -1.1113 26.9660 26.7790 -0.9092 -0.4988 TS055 75
76 TS229 22.7530 20.5990 -1.2407 -1.1405 24.7190 22.9400 -1.0860 -0.8974 TS229 76
77 TS257 22.4720 20.0370 -1.2628 -1.1989 28.3710 27.2470 -0.7986 -0.4502 TS257 77
78 TS214 21.6290 19.4760 -1.3291 -1.2571 22.4720 19.4760 -1.2628 -1.2571 TS214 78
79 TS314 21.6290 19.0070 -1.3291 -1.3058 44.1010 37.9210 0.4391 0.6581 TS314 79
80 RANDOM 21.24 18.84 -1.3597 -1.3231 21.24 18.84 -1.3597 -1.3231 RANDOM 80
81 TS213 20.7870 17.0410 -1.3954 -1.5099 26.6850 21.4420 -0.9313 -1.0530 TS213 81
82 TS001 20.2250 18.4460 -1.4396 -1.3641 45.7870 37.3600 0.5717 0.5999 TS001 82
83 TS296 20.2250 18.4460 -1.4396 -1.3641 45.7870 37.3600 0.5717 0.5999 TS296 83
84 TS345 19.9440 18.3520 -1.4617 -1.3738 36.7980 30.9930 -0.1355 -0.0613 TS345 84
85 TS026 19.3820 18.8200 -1.5059 -1.3252 23.3150 20.6930 -1.1964 -1.1307 TS026 85
86 TS264 19.3820 16.5730 -1.5059 -1.5585 22.1910 20.3180 -1.2849 -1.1697 TS264 86
87 TS328 18.8200 17.0410 -1.5501 -1.5099 18.8200 17.0410 -1.5501 -1.5099 TS328 87
88 TS014 18.5390 16.4790 -1.5722 -1.5683 22.7530 19.1950 -1.2407 -1.2863 TS014 88
89 TS248 18.2580 16.1990 -1.5944 -1.5974 18.2580 16.1990 -1.5944 -1.5974 TS248 89
90 TS250 17.9780 15.6370 -1.6164 -1.6557 22.1910 21.2550 -1.2849 -1.0724 TS250 90
91 TS289 17.6970 16.1990 -1.6385 -1.5974 17.6970 16.1990 -1.6385 -1.5974 TS289 91
92 TS009             -1.3597 -1.3231             -1.3597 -1.3231 TS009 92
93 TS016             -1.3597 -1.3231             -1.3597 -1.3231 TS016 93
94 TS020             -1.3597 -1.3231             -1.3597 -1.3231 TS020 94
95 TS029             -1.3597 -1.3231             -1.3597 -1.3231 TS029 95
96 TS033             -1.3597 -1.3231             -1.3597 -1.3231 TS033 96
97 TS035             -1.3597 -1.3231             -1.3597 -1.3231 TS035 97
98 TS039             -1.3597 -1.3231             -1.3597 -1.3231 TS039 98
99 TS042             -1.3597 -1.3231             -1.3597 -1.3231 TS042 99
100 TS044             -1.3597 -1.3231             -1.3597 -1.3231 TS044 100
101 TS045             -1.3597 -1.3231             -1.3597 -1.3231 TS045 101
102 TS061             -1.3597 -1.3231             -1.3597 -1.3231 TS061 102
103 TS074             -1.3597 -1.3231             -1.3597 -1.3231 TS074 103
104 TS075             -1.3597 -1.3231             -1.3597 -1.3231 TS075 104
105 TS083             -1.3597 -1.3231             -1.3597 -1.3231 TS083 105
106 TS084             -1.3597 -1.3231             -1.3597 -1.3231 TS084 106
107 TS086             -1.3597 -1.3231             -1.3597 -1.3231 TS086 107
108 TS096             -1.3597 -1.3231             -1.3597 -1.3231 TS096 108
109 TS105             -1.3597 -1.3231             -1.3597 -1.3231 TS105 109
110 TS110             -1.3597 -1.3231             -1.3597 -1.3231 TS110 110
111 TS140             -1.3597 -1.3231             -1.3597 -1.3231 TS140 111
112 TS147             -1.3597 -1.3231             -1.3597 -1.3231 TS147 112
113 TS149             -1.3597 -1.3231             -1.3597 -1.3231 TS149 113
114 TS150             -1.3597 -1.3231             -1.3597 -1.3231 TS150 114
115 TS152             -1.3597 -1.3231             -1.3597 -1.3231 TS152 115
116 TS153             -1.3597 -1.3231             -1.3597 -1.3231 TS153 116
117 TS154             -1.3597 -1.3231             -1.3597 -1.3231 TS154 117
118 TS160             -1.3597 -1.3231             -1.3597 -1.3231 TS160 118
119 TS170             -1.3597 -1.3231             -1.3597 -1.3231 TS170 119
120 TS172             -1.3597 -1.3231             -1.3597 -1.3231 TS172 120
121 TS178             -1.3597 -1.3231             -1.3597 -1.3231 TS178 121
122 TS180             -1.3597 -1.3231             -1.3597 -1.3231 TS180 122
123 TS182             -1.3597 -1.3231             -1.3597 -1.3231 TS182 123
124 TS184             -1.3597 -1.3231             -1.3597 -1.3231 TS184 124
125 TS186             -1.3597 -1.3231             -1.3597 -1.3231 TS186 125
126 TS189             -1.3597 -1.3231             -1.3597 -1.3231 TS189 126
127 TS192             -1.3597 -1.3231             -1.3597 -1.3231 TS192 127
128 TS199             -1.3597 -1.3231             -1.3597 -1.3231 TS199 128
129 TS200             -1.3597 -1.3231             -1.3597 -1.3231 TS200 129
130 TS206             -1.3597 -1.3231             -1.3597 -1.3231 TS206 130
131 TS228             -1.3597 -1.3231             -1.3597 -1.3231 TS228 131
132 TS240             -1.3597 -1.3231             -1.3597 -1.3231 TS240 132
133 TS242             -1.3597 -1.3231             -1.3597 -1.3231 TS242 133
134 TS254             -1.3597 -1.3231             -1.3597 -1.3231 TS254 134
135 TS261             -1.3597 -1.3231             -1.3597 -1.3231 TS261 135
136 TS263             -1.3597 -1.3231             -1.3597 -1.3231 TS263 136
137 TS269             -1.3597 -1.3231             -1.3597 -1.3231 TS269 137
138 TS278             -1.3597 -1.3231             -1.3597 -1.3231 TS278 138
139 TS279             -1.3597 -1.3231             -1.3597 -1.3231 TS279 139
140 TS295             -1.3597 -1.3231             -1.3597 -1.3231 TS295 140
141 TS297             -1.3597 -1.3231             -1.3597 -1.3231 TS297 141
142 TS299             -1.3597 -1.3231             -1.3597 -1.3231 TS299 142
143 TS300             -1.3597 -1.3231             -1.3597 -1.3231 TS300 143
144 TS301             -1.3597 -1.3231             -1.3597 -1.3231 TS301 144
145 TS311             -1.3597 -1.3231             -1.3597 -1.3231 TS311 145
146 TS316             -1.3597 -1.3231             -1.3597 -1.3231 TS316 146
147 TS322             -1.3597 -1.3231             -1.3597 -1.3231 TS322 147
148 TS324             -1.3597 -1.3231             -1.3597 -1.3231 TS324 148
149 TS330             -1.3597 -1.3231             -1.3597 -1.3231 TS330 149
150 TS331             -1.3597 -1.3231             -1.3597 -1.3231 TS331 150
151 TS333             -1.3597 -1.3231             -1.3597 -1.3231 TS333 151
152 TS336             -1.3597 -1.3231             -1.3597 -1.3231 TS336 152
153 TS347             -1.3597 -1.3231             -1.3597 -1.3231 TS347 153
154 TS353             -1.3597 -1.3231             -1.3597 -1.3231 TS353 154
155 TS358             -1.3597 -1.3231             -1.3597 -1.3231 TS358 155
156 TS360             -1.3597 -1.3231             -1.3597 -1.3231 TS360 156
157 TS362             -1.3597 -1.3231             -1.3597 -1.3231 TS362 157
158 TS365             -1.3597 -1.3231             -1.3597 -1.3231 TS365 158
159 TS373             -1.3597 -1.3231             -1.3597 -1.3231 TS373 159
160 TS382             -1.3597 -1.3231             -1.3597 -1.3231 TS382 160
161 TS386             -1.3597 -1.3231             -1.3597 -1.3231 TS386 161
162 TS399             -1.3597 -1.3231             -1.3597 -1.3231 TS399 162
163 TS400             -1.3597 -1.3231             -1.3597 -1.3231 TS400 163
164 TS402             -1.3597 -1.3231             -1.3597 -1.3231 TS402 164
165 TS403             -1.3597 -1.3231             -1.3597 -1.3231 TS403 165
166 TS408             -1.3597 -1.3231             -1.3597 -1.3231 TS408 166
167 TS418             -1.3597 -1.3231             -1.3597 -1.3231 TS418 167
168 TS423             -1.3597 -1.3231             -1.3597 -1.3231 TS423 168
169 TS424             -1.3597 -1.3231             -1.3597 -1.3231 TS424 169
170 TS433             -1.3597 -1.3231             -1.3597 -1.3231 TS433 170
171 TS436             -1.3597 -1.3231             -1.3597 -1.3231 TS436 171
172 TS439             -1.3597 -1.3231             -1.3597 -1.3231 TS439 172
173 TS444             -1.3597 -1.3231             -1.3597 -1.3231 TS444 173
174 TS450             -1.3597 -1.3231             -1.3597 -1.3231 TS450 174
175 TS458             -1.3597 -1.3231             -1.3597 -1.3231 TS458 175
176 TS461             -1.3597 -1.3231             -1.3597 -1.3231 TS461 176
177 TS477             -1.3597 -1.3231             -1.3597 -1.3231 TS477 177
178 TS484             -1.3597 -1.3231             -1.3597 -1.3231 TS484 178