T0563

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0563

NP_718175.1 from Shewanella oneidensis MR-1

Target type: Server only

Target sequence:

>T0563 NP_718175.1, Shewanella oneidensis MR-1, 279 residues
MKLETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFMFNRETHDGFFPASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDMLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSERYTADSYLMERLRELGVL

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3on7

Jmol of T0563 structure : 3on7

PyMOL of T0563

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0563A3-2793-279
T0563B1-2791-279
T0563C1-2791-279
T0563D1-2791-279

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Double-stranded beta-helix fold, one turn of helix is made by two pairs of antiparallel strands linked with short turns has appearance of a sandwich of distinct architecture and jelly-roll topology.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1gp6_A | PyMOL of 1gp6 A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases (PF03171).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0563 T0563 T0563 T0563
First score First Z-score Best score Best Z-score
1 TS449 72.7780 67.7780 2.1069 2.7072 72.7780 67.7780 2.1069 2.7072 TS449 1
2 TS453 72.7780 67.7780 2.1069 2.7072 72.7780 67.7780 2.1069 2.7072 TS453 2
3 TS346 72.7780 67.7780 2.1069 2.7072 72.7780 67.7780 2.1069 2.7072 TS346 3
4 TS055 68.9810 61.9440 1.4923 1.7031 68.9810 61.9440 1.4923 1.7031 TS055 4
5 TS104 68.6110 60.8950 1.4324 1.5225 68.6110 60.8950 1.4324 1.5225 TS104 5
6 TS490 68.4010 62.9490 1.3984 1.8761 68.4940 63.4260 1.4135 1.9582 TS490 6
7 TS361 68.2410 64.0430 1.3725 2.0644 68.7960 64.0430 1.4623 2.0644 TS361 7
8 TS481 68.1480 57.1910 1.3574 0.8850 68.1480 62.1600 1.3574 1.7403 TS481 8
9 TS276 67.7780 62.2220 1.2976 1.7509 67.7780 62.2220 1.2976 1.7509 TS276 9
10 TS094 67.7780 62.2220 1.2976 1.7509 67.7780 62.2220 1.2976 1.7509 TS094 10
11 TS286 67.7780 62.2220 1.2976 1.7509 67.7780 62.2220 1.2976 1.7509 TS286 11
12 TS470 67.6850 58.1790 1.2825 1.0551 68.1480 62.1600 1.3574 1.7403 TS470 12
13 TS407 67.3790 62.2370 1.2330 1.7535 67.7780 62.2370 1.2976 1.7535 TS407 13
14 TS077 67.2860 55.8860 1.2179 0.6604 67.2860 55.8860 1.2179 0.6604 TS077 14
15 TS088 67.1930 60.6260 1.2029 1.4762 67.8700 60.6260 1.3124 1.4762 TS088 15
16 TS037 67.1300 55.3400 1.1927 0.5664 67.1300 56.9750 1.1927 0.8478 TS037 16
17 TS236 65.9850 57.1250 1.0073 0.8736 66.8220 58.7360 1.1428 1.1509 TS236 17
18 TS114 65.7060 57.5900 0.9621 0.9537 65.7990 57.7760 0.9772 0.9857 TS114 18
19 TS452 64.6300 58.9510 0.7880 1.1879 64.8150 59.1050 0.8179 1.2144 TS452 19
20 TS380 64.0330 55.7310 0.6913 0.6337 64.0330 55.7310 0.6913 0.6337 TS380 20
21 TS436 63.9810 56.3890 0.6829 0.7470 63.9810 57.9620 0.6829 1.0177 TS436 21
22 TS428 63.9810 49.0740 0.6829 -0.5121 63.9810 55.4010 0.6829 0.5769 TS428 22
23 TS207 63.7960 57.0680 0.6530 0.8638 64.4050 58.6430 0.7515 1.1349 TS207 23
24 TS429 63.5690 56.0720 0.6162 0.6924 63.5690 56.0720 0.6162 0.6924 TS429 24
25 TS174 63.3330 55.9260 0.5780 0.6673 63.3330 55.9260 0.5780 0.6673 TS174 25
26 TS457 63.1970 58.1780 0.5560 1.0549 63.1970 58.1780 0.5560 1.0549 TS457 26
27 TS028 63.0560 57.2530 0.5332 0.8957 63.0560 57.2530 0.5332 0.8957 TS028 27
28 TS419 63.0110 54.5850 0.5259 0.4365 64.5370 60.1540 0.7729 1.3950 TS419 28
29 TS166 63.0110 54.5850 0.5259 0.4365 64.5370 60.1540 0.7729 1.3950 TS166 29
30 TS127 62.9180 55.2350 0.5108 0.5483 62.9180 55.2350 0.5108 0.5483 TS127 30
31 TS113 62.5930 51.9750 0.4582 -0.0128 68.1480 63.7650 1.3574 2.0165 TS113 31
32 TS314 62.5000 56.8830 0.4432 0.8320 62.5000 56.8830 0.4432 0.8320 TS314 32
33 TS213 62.5000 56.0190 0.4432 0.6833 62.5930 58.8890 0.4582 1.1773 TS213 33
34 TS208 62.4540 53.2840 0.4357 0.2125 62.9630 56.4440 0.5181 0.7564 TS208 34
35 TS345 62.3610 53.9960 0.4207 0.3351 63.5190 53.9960 0.6081 0.3351 TS345 35
36 TS018 62.1300 51.2650 0.3833 -0.1350 62.1300 51.2650 0.3833 -0.1350 TS018 36
37 TS409 61.9890 54.6780 0.3605 0.4525 61.9890 54.6780 0.3605 0.4525 TS409 37
38 TS350 61.9890 51.4560 0.3605 -0.1021 62.8250 54.8150 0.4958 0.4760 TS350 38
39 TS395 61.7590 54.2280 0.3232 0.3750 64.0330 57.8380 0.6913 0.9964 TS395 39
40 TS435 61.6670 50.7100 0.3083 -0.2305 62.9180 58.0240 0.5108 1.0284 TS435 40
41 TS102 61.5240 53.7790 0.2852 0.2977 61.5240 54.2900 0.2852 0.3857 TS102 41
42 TS129 61.3890 50.8950 0.2633 -0.1987 63.7040 57.8400 0.6381 0.9967 TS129 42
43 TS056 61.0190 49.4140 0.2034 -0.4536 63.1480 54.7090 0.5481 0.4578 TS056 43
44 TS291 60.9260 50.3700 0.1884 -0.2890 62.5000 57.1910 0.4432 0.8850 TS291 44
45 TS275 60.7810 52.4160 0.1649 0.0631 62.7320 55.9170 0.4807 0.6657 TS275 45
46 TS119 60.7410 54.7530 0.1584 0.4654 61.3380 54.7530 0.2551 0.4654 TS119 46
47 TS215 60.2230 46.2210 0.0746 -1.0032 60.2230 55.4630 0.0746 0.5876 TS215 47
48 TS080 60.2230 46.2210 0.0746 -1.0032 60.2230 55.4630 0.0746 0.5876 TS080 48
49 TS220 60.0930 52.9320 0.0535 0.1519 62.4070 54.8770 0.4281 0.4867 TS220 49
50 TS447 60.0930 52.9320 0.0535 0.1519 62.4070 54.8770 0.4281 0.4867 TS447 50
51 TS302 60.0930 51.7590 0.0535 -0.0500 62.4070 54.8770 0.4281 0.4867 TS302 51
52 TS142 60.0930 51.7590 0.0535 -0.0500 62.4070 54.8770 0.4281 0.4867 TS142 52
53 TS074 60.0930 49.7840 0.0535 -0.3899 60.0930 49.7840 0.0535 -0.3899 TS074 53
54 TS002 60.0000 49.8150 0.0385 -0.3846 60.2230 54.0270 0.0746 0.3404 TS002 54
55 TS253 59.9070 50.5860 0.0234 -0.2519 59.9070 54.0740 0.0234 0.3485 TS253 55
56 TS171 59.3520 54.7840 -0.0664 0.4707 59.3520 54.7840 -0.0664 0.4707 TS171 56
57 TS391 59.2590 53.8890 -0.0815 0.3167 59.2590 53.8890 -0.0815 0.3167 TS391 57
58 TS319 59.2010 54.2440 -0.0909 0.3778 59.2010 54.2440 -0.0909 0.3778 TS319 58
59 TS321 59.1670 53.3020 -0.0964 0.2156 59.1670 53.3020 -0.0964 0.2156 TS321 59
60 TS001 59.1080 48.2030 -0.1059 -0.6620 59.9440 52.8090 0.0294 0.1308 TS001 60
61 TS476 58.7360 54.0270 -0.1661 0.3404 58.7360 54.0270 -0.1661 0.3404 TS476 61
62 TS103 57.9630 50.8640 -0.2913 -0.2040 58.6430 53.0860 -0.1812 0.1784 TS103 62
63 TS307 57.6850 50.8950 -0.3363 -0.1987 57.9000 51.4810 -0.3015 -0.0978 TS307 63
64 TS165 57.1300 50.2780 -0.4261 -0.3049 59.2940 51.3010 -0.0758 -0.1288 TS165 64
65 TS304 57.0630 44.1450 -0.4369 -1.3605 59.1670 51.9210 -0.0964 -0.0221 TS304 65
66 TS420 57.0370 52.4070 -0.4412 0.0616 57.8070 52.4070 -0.3165 0.0616 TS420 66
67 TS471 57.0370 52.4070 -0.4412 0.0616 57.8070 52.4070 -0.3165 0.0616 TS471 67
68 TS117 56.7590 48.0560 -0.4862 -0.6873 56.9440 48.2410 -0.4562 -0.6555 TS117 68
69 TS047 56.4130 51.5180 -0.5422 -0.0914 56.4130 51.5180 -0.5422 -0.0914 TS047 69
70 TS009 56.2270 48.2960 -0.5723 -0.6460 56.2270 48.2960 -0.5723 -0.6460 TS009 70
71 TS273 56.2040 49.1670 -0.5760 -0.4961 59.9440 54.2440 0.0294 0.3778 TS273 71
72 TS026 56.2040 47.5000 -0.5760 -0.7830 58.6110 51.7590 -0.1864 -0.0500 TS026 72
73 TS245 55.3700 45.5560 -0.7110 -1.1176 55.3700 45.5560 -0.7110 -1.1176 TS245 73
74 AL396 55.1850 49.0740 -0.7410 -0.5121 55.1850 49.0740 -0.7410 -0.5121 AL396 74
75 TS296 55.1120 47.4600 -0.7528 -0.7899 60.2780 53.1790 0.0835 0.1945 TS296 75
76 TS366 55.0930 48.7350 -0.7558 -0.5704 59.1670 52.9940 -0.0964 0.1626 TS366 76
77 TS063 55.0930 48.7350 -0.7558 -0.5704 61.2450 50.1860 0.2400 -0.3207 TS063 77
78 TS218 55.0190 48.7610 -0.7678 -0.5660 55.4830 49.5970 -0.6927 -0.4221 TS218 78
79 TS035 54.6300 40.6170 -0.8308 -1.9677 54.6300 40.6170 -0.8308 -1.9677 TS035 79
80 TS214 54.4610 48.6680 -0.8581 -0.5820 57.2490 50.6170 -0.4068 -0.2465 TS214 80
81 TS189 53.5190 47.0680 -1.0106 -0.8574 53.5190 47.0680 -1.0106 -0.8574 TS189 81
82 TS173 52.2220 41.6360 -1.2206 -1.7923 60.5950 51.9520 0.1348 -0.0167 TS173 82
83 TS328 50.6510 45.7560 -1.4749 -1.0832 50.6510 45.7560 -1.4749 -1.0832 TS328 83
84 TS244 49.8150 45.1850 -1.6102 -1.1815 49.8150 45.1850 -1.6102 -1.1815 TS244 84
85 TS289 49.4420 39.9010 -1.6706 -2.0909 49.4420 39.9010 -1.6706 -2.0909 TS289 85
86 AL285 46.0190 42.8090 -2.2247 -1.5904 47.9630 43.2410 -1.9100 -1.5161 AL285 86
87 TS250 38.3830 31.5680 -3.4608 -3.5252 49.3490 42.6580 -1.6857 -1.6164 TS250 87
88 TS355 12.0070 11.1110 -7.7304 -7.0463 13.7960 12.4380 -7.4408 -6.8179 TS355 88
89 TS014 10.5020 9.8510 -7.9741 -7.2631 10.5020 9.8510 -7.9741 -7.2631 TS014 89
90 TS229 9.6650 8.9840 -8.1095 -7.4124 11.1110 10.7100 -7.8755 -7.1153 TS229 90
91 RANDOM 8.97 7.70 -8.2221 -7.6334 8.97 7.70 -8.2221 -7.6334 RANDOM 91
92 TS264 8.7360 7.6830 -8.2599 -7.6363 10.9670 9.5420 -7.8988 -7.3163 TS264 92
93 TS016             -8.2221 -7.6334             -8.2221 -7.6334 TS016 93
94 TS020             -8.2221 -7.6334             -8.2221 -7.6334 TS020 94
95 TS029             -8.2221 -7.6334             -8.2221 -7.6334 TS029 95
96 TS033             -8.2221 -7.6334             -8.2221 -7.6334 TS033 96
97 TS039             -8.2221 -7.6334             -8.2221 -7.6334 TS039 97
98 TS042             -8.2221 -7.6334             -8.2221 -7.6334 TS042 98
99 TS044             -8.2221 -7.6334             -8.2221 -7.6334 TS044 99
100 TS045             -8.2221 -7.6334             -8.2221 -7.6334 TS045 100
101 TS060             -8.2221 -7.6334             -8.2221 -7.6334 TS060 101
102 TS061             -8.2221 -7.6334             -8.2221 -7.6334 TS061 102
103 TS075             -8.2221 -7.6334             -8.2221 -7.6334 TS075 103
104 TS083             -8.2221 -7.6334             -8.2221 -7.6334 TS083 104
105 TS084             -8.2221 -7.6334             -8.2221 -7.6334 TS084 105
106 TS086             -8.2221 -7.6334             -8.2221 -7.6334 TS086 106
107 TS096             -8.2221 -7.6334             -8.2221 -7.6334 TS096 107
108 TS105             -8.2221 -7.6334             -8.2221 -7.6334 TS105 108
109 TS110             -8.2221 -7.6334             -8.2221 -7.6334 TS110 109
110 TS140             -8.2221 -7.6334             -8.2221 -7.6334 TS140 110
111 TS147             -8.2221 -7.6334             -8.2221 -7.6334 TS147 111
112 TS149             -8.2221 -7.6334             -8.2221 -7.6334 TS149 112
113 TS150             -8.2221 -7.6334             -8.2221 -7.6334 TS150 113
114 TS152             -8.2221 -7.6334             -8.2221 -7.6334 TS152 114
115 TS153             -8.2221 -7.6334             -8.2221 -7.6334 TS153 115
116 TS154             -8.2221 -7.6334             -8.2221 -7.6334 TS154 116
117 TS160             -8.2221 -7.6334             -8.2221 -7.6334 TS160 117
118 TS170             -8.2221 -7.6334             -8.2221 -7.6334 TS170 118
119 TS172             -8.2221 -7.6334             -8.2221 -7.6334 TS172 119
120 TS178             -8.2221 -7.6334             -8.2221 -7.6334 TS178 120
121 TS180             -8.2221 -7.6334             -8.2221 -7.6334 TS180 121
122 TS182             -8.2221 -7.6334             -8.2221 -7.6334 TS182 122
123 TS184             -8.2221 -7.6334             -8.2221 -7.6334 TS184 123
124 TS186             -8.2221 -7.6334             -8.2221 -7.6334 TS186 124
125 TS192             -8.2221 -7.6334             -8.2221 -7.6334 TS192 125
126 TS199             -8.2221 -7.6334             -8.2221 -7.6334 TS199 126
127 TS200             -8.2221 -7.6334             -8.2221 -7.6334 TS200 127
128 TS206             -8.2221 -7.6334             -8.2221 -7.6334 TS206 128
129 TS228             -8.2221 -7.6334             -8.2221 -7.6334 TS228 129
130 TS240             -8.2221 -7.6334             -8.2221 -7.6334 TS240 130
131 TS242             -8.2221 -7.6334             -8.2221 -7.6334 TS242 131
132 TS248             -8.2221 -7.6334             -8.2221 -7.6334 TS248 132
133 TS254             -8.2221 -7.6334             -8.2221 -7.6334 TS254 133
134 TS257             -8.2221 -7.6334             -8.2221 -7.6334 TS257 134
135 TS261             -8.2221 -7.6334             -8.2221 -7.6334 TS261 135
136 TS263             -8.2221 -7.6334             -8.2221 -7.6334 TS263 136
137 TS269             -8.2221 -7.6334             -8.2221 -7.6334 TS269 137
138 TS278             -8.2221 -7.6334             -8.2221 -7.6334 TS278 138
139 TS279             -8.2221 -7.6334             -8.2221 -7.6334 TS279 139
140 TS282             -8.2221 -7.6334             -8.2221 -7.6334 TS282 140
141 TS295             -8.2221 -7.6334             -8.2221 -7.6334 TS295 141
142 TS297             -8.2221 -7.6334             -8.2221 -7.6334 TS297 142
143 TS299             -8.2221 -7.6334             -8.2221 -7.6334 TS299 143
144 TS300             -8.2221 -7.6334             -8.2221 -7.6334 TS300 144
145 TS301             -8.2221 -7.6334             -8.2221 -7.6334 TS301 145
146 TS311             -8.2221 -7.6334             -8.2221 -7.6334 TS311 146
147 TS316             -8.2221 -7.6334             -8.2221 -7.6334 TS316 147
148 TS322             -8.2221 -7.6334             -8.2221 -7.6334 TS322 148
149 TS324             -8.2221 -7.6334             -8.2221 -7.6334 TS324 149
150 TS330             -8.2221 -7.6334             -8.2221 -7.6334 TS330 150
151 TS331             -8.2221 -7.6334             -8.2221 -7.6334 TS331 151
152 TS333             -8.2221 -7.6334             -8.2221 -7.6334 TS333 152
153 TS336             -8.2221 -7.6334             -8.2221 -7.6334 TS336 153
154 TS347             -8.2221 -7.6334             -8.2221 -7.6334 TS347 154
155 TS353             -8.2221 -7.6334             -8.2221 -7.6334 TS353 155
156 TS358             -8.2221 -7.6334             -8.2221 -7.6334 TS358 156
157 TS360             -8.2221 -7.6334             -8.2221 -7.6334 TS360 157
158 TS362             -8.2221 -7.6334             -8.2221 -7.6334 TS362 158
159 TS365             -8.2221 -7.6334             -8.2221 -7.6334 TS365 159
160 TS373             -8.2221 -7.6334             -8.2221 -7.6334 TS373 160
161 TS382             -8.2221 -7.6334             -8.2221 -7.6334 TS382 161
162 TS386             -8.2221 -7.6334             -8.2221 -7.6334 TS386 162
163 TS399             -8.2221 -7.6334             -8.2221 -7.6334 TS399 163
164 TS400             -8.2221 -7.6334             -8.2221 -7.6334 TS400 164
165 TS402             -8.2221 -7.6334             -8.2221 -7.6334 TS402 165
166 TS403             -8.2221 -7.6334             -8.2221 -7.6334 TS403 166
167 TS408             -8.2221 -7.6334             -8.2221 -7.6334 TS408 167
168 TS418             -8.2221 -7.6334             -8.2221 -7.6334 TS418 168
169 TS423             -8.2221 -7.6334             -8.2221 -7.6334 TS423 169
170 TS424             -8.2221 -7.6334             -8.2221 -7.6334 TS424 170
171 TS433             -8.2221 -7.6334             -8.2221 -7.6334 TS433 171
172 TS439             -8.2221 -7.6334             -8.2221 -7.6334 TS439 172
173 TS444             -8.2221 -7.6334             -8.2221 -7.6334 TS444 173
174 TS450             -8.2221 -7.6334             -8.2221 -7.6334 TS450 174
175 TS458             -8.2221 -7.6334             -8.2221 -7.6334 TS458 175
176 TS461             -8.2221 -7.6334             -8.2221 -7.6334 TS461 176
177 TS477             -8.2221 -7.6334             -8.2221 -7.6334 TS477 177
178 TS484             -8.2221 -7.6334             -8.2221 -7.6334 TS484 178