T0612

Targets
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519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
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595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
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623 624 625 626
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631 632 633 634
635 636 637 638
639 640 641 642
643      

T0612

YP_001093860.1 from Shewanella loihica PV-4

Target type: Server only

Target sequence:

>T0612 YP_001093860.1, Shewanella loihica PV-4, 129 residues
MNKGLVLACLLLGLSACAPHTGGIMISSTGEVRVDNGSFHSDVDVSAVTTQAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALSPNATAVRCELYVREAISN

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3o0l

Jmol of T0612 structure : 3o0l

PyMOL of T0612

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0612A20-12820-128
T0612B22-12922-129

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Ig-like

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1p5v_A | PyMOL of 1p5v A, 7-147

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Protein of unknown function (DUF1425) (PF07233).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0612 T0612 T0612 T0612
First score First Z-score Best score Best Z-score
1 TS402 67.3610 61.1880 1.5885 1.7627 67.3610 61.1880 1.5885 1.7627 TS402 1
2 TS096 66.2840 57.4160 1.5208 1.4989 66.2840 57.4160 1.5208 1.4989 TS096 2
3 TS361 65.5090 57.0220 1.4721 1.4713 65.7410 57.0220 1.4867 1.4713 TS361 3
4 TS094 64.5830 56.2500 1.4138 1.4173 64.5830 57.6450 1.4138 1.5149 TS094 4
5 TS470 64.5830 56.2500 1.4138 1.4173 64.5830 56.3270 1.4138 1.4227 TS470 5
6 TS104 64.2200 61.1620 1.3910 1.7609 64.2200 61.1620 1.3910 1.7609 TS104 6
7 TS016 63.9910 56.4980 1.3766 1.4347 65.5960 60.2450 1.4775 1.6967 TS016 7
8 TS490 63.5320 56.6510 1.3477 1.4454 63.6570 58.8730 1.3556 1.6008 TS490 8
9 TS060 63.5320 51.1470 1.3477 1.0604 63.5320 51.1470 1.3477 1.0604 TS060 9
10 TS088 63.3030 57.3390 1.3333 1.4935 63.3030 58.4100 1.3333 1.5684 TS088 10
11 TS386 63.3030 56.4220 1.3333 1.4294 64.9080 58.8690 1.4343 1.6005 TS386 11
12 TS240 63.0730 55.7340 1.3189 1.3812 63.0730 55.7340 1.3189 1.3812 TS240 12
13 TS407 63.0730 55.7340 1.3189 1.3812 63.3030 57.6450 1.3333 1.5149 TS407 13
14 TS428 63.0730 55.7340 1.3189 1.3812 63.5320 55.7340 1.3477 1.3812 TS428 14
15 TS033 62.9630 55.8640 1.3120 1.3903 62.9630 55.8640 1.3120 1.3903 TS033 15
16 TS380 62.5000 56.3270 1.2828 1.4227 64.5830 57.7980 1.4138 1.5256 TS380 16
17 TS110 62.5000 56.3270 1.2828 1.4227 62.5000 56.3270 1.2828 1.4227 TS110 17
18 TS113 62.5000 55.0930 1.2828 1.3364 62.5000 55.0930 1.2828 1.3364 TS113 18
19 TS037 62.5000 54.0120 1.2828 1.2608 62.5000 54.6300 1.2828 1.3040 TS037 19
20 TS418 62.1560 56.0400 1.2612 1.4026 62.1560 56.0400 1.2612 1.4026 TS418 20
21 TS400 61.4680 54.4340 1.2179 1.2903 63.3030 59.7860 1.3333 1.6646 TS400 21
22 TS147 60.0920 52.2940 1.1314 1.1406 61.9270 56.2690 1.2468 1.4187 TS147 22
23 TS424 59.8620 52.3700 1.1169 1.1459 60.3210 54.5520 1.1458 1.2986 TS424 23
24 TS382 59.2590 51.0800 1.0790 1.0557 59.2590 54.7400 1.0790 1.3117 TS382 24
25 TS061 59.1740 51.0700 1.0737 1.0550 59.6330 51.5290 1.1025 1.0871 TS061 25
26 TS395 59.1740 50.9170 1.0737 1.0443 65.5090 59.9540 1.4721 1.6764 TS395 26
27 TS353 58.7960 51.5430 1.0499 1.0881 60.8800 54.8610 1.1810 1.3202 TS353 27
28 TS114 58.7960 51.3890 1.0499 1.0773 61.3430 52.8550 1.2101 1.1799 TS114 28
29 TS457 57.6390 52.7010 0.9771 1.1691 61.1110 56.3270 1.1955 1.4227 TS457 29
30 TS450 57.5690 51.7580 0.9727 1.1031 57.5690 51.7580 0.9727 1.1031 TS450 30
31 TS300 57.1760 50.0770 0.9480 0.9856 58.3330 50.3090 1.0208 1.0018 TS300 31
32 TS360 57.1100 48.0890 0.9439 0.8465 57.1100 49.5410 0.9439 0.9481 TS360 32
33 TS253 56.9440 49.3830 0.9334 0.9370 61.5740 50.3090 1.2246 1.0018 TS253 33
34 TS458 56.9440 47.5310 0.9334 0.8075 56.9440 47.5310 0.9334 0.8075 TS458 34
35 TS174 56.9440 44.9070 0.9334 0.6239 56.9440 44.9070 0.9334 0.6239 TS174 35
36 TS365 56.6510 51.1470 0.9150 1.0604 56.6510 51.1470 0.9150 1.0604 TS365 36
37 TS236 56.4810 48.6110 0.9043 0.8830 56.7130 48.6880 0.9189 0.8884 TS236 37
38 TS419 54.8610 47.4540 0.8024 0.8021 55.3240 52.2380 0.8316 1.1367 TS419 38
39 TS166 54.8610 47.4540 0.8024 0.8021 55.3240 52.2380 0.8316 1.1367 TS166 39
40 TS127 54.3580 42.2780 0.7708 0.4401 54.5870 42.2780 0.7852 0.4401 TS127 40
41 TS324 54.1280 38.2260 0.7563 0.1567 54.8170 42.7370 0.7997 0.4722 TS324 41
42 TS056 53.9350 43.5960 0.7442 0.5323 53.9350 45.1390 0.7442 0.6402 TS056 42
43 TS242 53.0090 45.9100 0.6860 0.6941 53.0090 45.9100 0.6860 0.6941 TS242 43
44 TS452 53.0090 45.9100 0.6860 0.6941 53.0090 45.9100 0.6860 0.6941 TS452 44
45 TS307 52.9820 40.2910 0.6843 0.3011 52.9820 45.2600 0.6843 0.6486 TS307 45
46 TS477 52.7780 45.6790 0.6714 0.6779 53.7040 46.6820 0.7297 0.7481 TS477 46
47 TS208 52.3150 44.7530 0.6423 0.6132 55.3240 45.1390 0.8316 0.6402 TS208 47
48 TS170 52.0640 45.1830 0.6265 0.6433 53.2110 46.6360 0.6987 0.7449 TS170 48
49 TS391 52.0640 41.8960 0.6265 0.4133 52.0640 41.8960 0.6265 0.4133 TS391 49
50 TS213 51.6060 42.2780 0.5977 0.4401 51.6060 42.2780 0.5977 0.4401 TS213 50
51 TS275 51.3890 42.1300 0.5841 0.4297 51.6200 44.3670 0.5986 0.5862 TS275 51
52 TS080 51.3760 44.4950 0.5833 0.5951 51.3760 44.4950 0.5833 0.5951 TS080 52
53 TS399 51.3760 42.8130 0.5833 0.4775 62.5000 56.3270 1.2828 1.4227 TS399 53
54 TS449 51.1570 42.5150 0.5695 0.4566 51.1570 42.5150 0.5695 0.4566 TS449 54
55 TS453 51.1570 42.5150 0.5695 0.4566 51.1570 42.5150 0.5695 0.4566 TS453 55
56 TS346 51.1570 42.5150 0.5695 0.4566 51.1570 42.5150 0.5695 0.4566 TS346 56
57 TS276 50.6880 45.6420 0.5400 0.6754 50.6880 45.9480 0.5400 0.6968 TS276 57
58 TS077 50.6880 45.6420 0.5400 0.6754 50.6880 45.9480 0.5400 0.6968 TS077 58
59 TS286 50.6880 45.6420 0.5400 0.6754 50.6880 45.9480 0.5400 0.6968 TS286 59
60 TS103 50.6880 42.1250 0.5400 0.4294 50.6880 42.1250 0.5400 0.4294 TS103 60
61 TS278 50.4590 41.2840 0.5256 0.3705 50.4590 41.2840 0.5256 0.3705 TS278 61
62 TS319 50.2310 42.6700 0.5113 0.4675 51.6200 42.8240 0.5986 0.4783 TS319 62
63 TS297 49.7710 41.5140 0.4823 0.3866 64.9080 60.9330 1.4343 1.7449 TS297 63
64 TS215 49.7690 46.0650 0.4822 0.7049 49.7690 46.0650 0.4822 0.7049 TS215 64
65 TS002 49.7690 46.0650 0.4822 0.7049 53.7040 46.0650 0.7297 0.7049 TS002 65
66 TS408 49.5410 38.0730 0.4679 0.1460 54.6300 44.2900 0.7879 0.5808 TS408 66
67 TS173 49.5370 38.2720 0.4676 0.1599 53.4720 49.9230 0.7151 0.9748 TS173 67
68 TS291 49.3120 42.7370 0.4535 0.4722 49.5370 42.7370 0.4676 0.4722 TS291 68
69 TS192 49.3060 41.2810 0.4531 0.3703 49.3060 41.2810 0.4531 0.3703 TS192 69
70 TS321 49.0830 41.1310 0.4391 0.3598 59.1740 50.7650 1.0737 1.0337 TS321 70
71 TS165 48.6110 43.5190 0.4094 0.5269 48.6110 43.5190 0.4094 0.5269 TS165 71
72 TS119 48.3940 38.4560 0.3957 0.1727 53.9350 45.4480 0.7442 0.6618 TS119 72
73 TS299 48.1650 39.7550 0.3813 0.2636 48.1650 42.8130 0.3813 0.4775 TS299 73
74 TS471 48.1480 43.2870 0.3803 0.5106 48.1480 43.2870 0.3803 0.5106 TS471 74
75 TS296 47.9360 43.1960 0.3669 0.5043 51.6200 43.1960 0.5986 0.5043 TS296 75
76 TS018 47.7060 42.5080 0.3525 0.4562 47.7060 42.5080 0.3525 0.4562 TS018 76
77 TS301 46.0650 41.8980 0.2493 0.4135 50.2310 42.6700 0.5113 0.4675 TS301 77
78 TS429 45.6020 35.8800 0.2202 -0.0074 56.0190 45.3700 0.8753 0.6563 TS429 78
79 TS055 44.0370 36.3910 0.1217 0.0283 46.7890 40.4320 0.2948 0.3110 TS055 79
80 TS481 43.3490 39.8320 0.0785 0.2690 50.6940 47.4540 0.5404 0.8021 TS481 80
81 TS207 43.1190 36.5440 0.0640 0.0390 43.1190 36.5440 0.0640 0.0390 TS207 81
82 TS117 42.4310 35.5500 0.0208 -0.0305 42.4310 35.5500 0.0208 -0.0305 TS117 82
83 TS409 42.2020 35.3210 0.0063 -0.0465 49.3120 44.7250 0.4535 0.6112 TS409 83
84 TS083 41.9720 36.6210 -0.0081 0.0444 41.9720 36.6210 -0.0081 0.0444 TS083 84
85 TS366 40.7410 33.0250 -0.0855 -0.2071 49.5370 42.7470 0.4676 0.4729 TS366 85
86 TS063 40.7410 33.0250 -0.0855 -0.2071 49.5370 42.7470 0.4676 0.4729 TS063 86
87 TS026 37.8440 27.7520 -0.2677 -0.5759 56.8810 51.3760 0.9295 1.0764 TS026 87
88 TS214 36.0090 28.2870 -0.3831 -0.5385 36.0090 28.2870 -0.3831 -0.5385 TS214 88
89 TS028 35.7800 31.6510 -0.3975 -0.3032 35.7800 31.6510 -0.3975 -0.3032 TS028 89
90 TS302 35.7800 31.6510 -0.3975 -0.3032 57.8700 51.1470 0.9917 1.0604 TS302 90
91 TS142 35.7800 31.6510 -0.3975 -0.3032 57.8700 51.1470 0.9917 1.0604 TS142 91
92 TS220 35.7800 31.6510 -0.3975 -0.3032 35.7800 31.6510 -0.3975 -0.3032 TS220 92
93 TS447 35.7800 31.6510 -0.3975 -0.3032 35.7800 31.6510 -0.3975 -0.3032 TS447 93
94 TS186 35.1850 29.0120 -0.4349 -0.4878 36.4680 29.0120 -0.3542 -0.4878 TS186 94
95 TS045 33.7960 28.5490 -0.5223 -0.5202 33.7960 28.5490 -0.5223 -0.5202 TS045 95
96 TS042 31.8810 26.8350 -0.6427 -0.6401 31.8810 27.4690 -0.6427 -0.5957 TS042 96
97 TS273 31.0190 27.1600 -0.6969 -0.6173 50.2310 42.6700 0.5113 0.4675 TS273 97
98 TS001 31.0190 27.1600 -0.6969 -0.6173 31.0190 27.1600 -0.6969 -0.6173 TS001 98
99 TS295 31.0190 27.0060 -0.6969 -0.6281 58.9450 50.0760 1.0593 0.9855 TS295 99
100 TS461 31.0190 23.6110 -0.6969 -0.8656 50.0000 39.8150 0.4967 0.2678 TS461 100
101 TS316 30.0930 25.7720 -0.7552 -0.7144 30.7870 27.5460 -0.7115 -0.5903 TS316 101
102 TS484 29.6300 25.9260 -0.7843 -0.7037 52.0640 44.1130 0.6265 0.5684 TS484 102
103 TS047 27.5460 22.2990 -0.9153 -0.9573 27.5460 22.2990 -0.9153 -0.9573 TS047 103
104 TS084 27.5460 21.5280 -0.9153 -1.0113 28.4720 22.5540 -0.8571 -0.9395 TS084 104
105 TS172 26.6060 19.4190 -0.9744 -1.1588 44.6760 36.3430 0.1619 0.0250 TS172 105
106 TS218 26.3890 26.0800 -0.9881 -0.6929 29.3980 27.7010 -0.7989 -0.5795 TS218 106
107 TS244 25.4590 18.2720 -1.0466 -1.2390 42.4310 38.7350 0.0208 0.1923 TS244 107
108 TS282 25.2310 21.9910 -1.0609 -0.9789 25.2310 21.9910 -1.0609 -0.9789 TS282 108
109 TS153 25.0000 22.0680 -1.0754 -0.9735 25.0000 22.0680 -1.0754 -0.9735 TS153 109
110 TS355 25.0000 19.8010 -1.0754 -1.1321 25.4630 20.6790 -1.0463 -1.0706 TS355 110
111 TS250 23.1650 18.7310 -1.1908 -1.2069 28.6700 24.6180 -0.8446 -0.7951 TS250 111
112 TS200 23.1480 19.0590 -1.1919 -1.1840 43.0560 34.1050 0.0601 -0.1316 TS200 112
113 TS257 22.9360 20.4130 -1.2052 -1.0893 33.0280 29.8170 -0.5706 -0.4315 TS257 113
114 TS403 22.6850 18.8270 -1.2210 -1.2002 22.9170 19.5220 -1.2064 -1.1516 TS403 114
115 TS435 22.4540 21.5280 -1.2356 -1.0113 46.3300 39.9080 0.2659 0.2743 TS435 115
116 TS149 22.2220 19.5990 -1.2501 -1.1462 22.2220 19.5990 -1.2501 -1.1462 TS149 116
117 TS304 21.2960 17.3610 -1.3084 -1.3027 37.1560 29.3210 -0.3110 -0.4662 TS304 117
118 TS171 21.0650 17.3610 -1.3229 -1.3027 22.6850 20.8330 -1.2210 -1.0599 TS171 118
119 TS345 20.6020 17.7470 -1.3520 -1.2757 46.7590 39.5060 0.2929 0.2462 TS345 119
120 TS423 19.9070 17.1300 -1.3957 -1.3189 64.5830 57.7930 1.4138 1.5252 TS423 120
121 TS102 19.9070 17.1300 -1.3957 -1.3189 53.2410 47.3770 0.7006 0.7967 TS102 121
122 TS229 19.4440 17.8240 -1.4248 -1.2703 21.3300 19.1360 -1.3062 -1.1786 TS229 122
123 TS044 19.4440 16.0490 -1.4248 -1.3945 26.3890 23.1480 -0.9881 -0.8980 TS044 123
124 AL396 19.2130 13.8120 -1.4394 -1.5510 25.2310 19.6760 -1.0609 -1.1408 AL396 124
125 TS350 19.0370 17.5080 -1.4504 -1.2924 24.3120 20.6420 -1.1187 -1.0732 TS350 125
126 TS328 19.0370 16.0550 -1.4504 -1.3941 19.0370 16.0550 -1.4504 -1.3941 TS328 126
127 RANDOM 18.66 15.67 -1.4742 -1.4210 18.66 15.67 -1.4742 -1.4210 RANDOM 127
128 TS373 17.5930 14.3520 -1.5413 -1.5132 19.4440 16.6670 -1.4248 -1.3513 TS373 128
129 TS476 17.4310 13.7610 -1.5514 -1.5545 17.4310 13.7610 -1.5514 -1.5545 TS476 129
130 TS020 16.8980 15.6640 -1.5850 -1.4214 23.1480 20.6790 -1.1919 -1.0706 TS020 130
131 TS182 16.4350 13.6570 -1.6141 -1.5618 22.2220 17.9660 -1.2501 -1.2604 TS182 131
132 TS333 15.9720 14.3520 -1.6432 -1.5132 16.0550 14.6790 -1.6380 -1.4903 TS333 132
133 TS264 15.5090 12.5770 -1.6723 -1.6373 20.3700 16.6670 -1.3666 -1.3513 TS264 133
134 TS289 15.2780 13.5030 -1.6868 -1.5726 15.2780 13.5030 -1.6868 -1.5726 TS289 134
135 TS311 14.8150 14.0430 -1.7160 -1.5348 20.8720 14.9080 -1.3350 -1.4743 TS311 135
136 TS336 14.2200 13.6090 -1.7534 -1.5652 15.9720 13.6090 -1.6432 -1.5652 TS336 136
137 TS420 13.8890 11.8830 -1.7742 -1.6859 13.8890 11.8830 -1.7742 -1.6859 TS420 137
138 TS029 13.5320 11.0860 -1.7966 -1.7416 19.7250 18.6540 -1.4072 -1.2123 TS029 138
139 TS129 13.0730 11.5440 -1.8255 -1.7096 15.3670 13.5320 -1.6812 -1.5705 TS129 139
140 TS314 12.0370 10.0310 -1.8907 -1.8154 26.6060 20.0310 -0.9744 -1.1160 TS314 140
141 AL285 11.4680 10.7030 -1.9264 -1.7684 37.5000 34.8770 -0.2893 -0.0776 AL285 141
142 TS206 11.2390 10.0920 -1.9408 -1.8111 11.2390 10.0920 -1.9408 -1.8111 TS206 142
143 TS009             -1.4742 -1.4210             -1.4742 -1.4210 TS009 143
144 TS014             -1.4742 -1.4210             -1.4742 -1.4210 TS014 144
145 TS035             -1.4742 -1.4210             -1.4742 -1.4210 TS035 145
146 TS039             -1.4742 -1.4210             -1.4742 -1.4210 TS039 146
147 TS074             -1.4742 -1.4210             -1.4742 -1.4210 TS074 147
148 TS075             -1.4742 -1.4210             -1.4742 -1.4210 TS075 148
149 TS086             -1.4742 -1.4210             -1.4742 -1.4210 TS086 149
150 TS105             -1.4742 -1.4210             -1.4742 -1.4210 TS105 150
151 TS140             -1.4742 -1.4210             -1.4742 -1.4210 TS140 151
152 TS150             -1.4742 -1.4210             -1.4742 -1.4210 TS150 152
153 TS152             -1.4742 -1.4210             -1.4742 -1.4210 TS152 153
154 TS154             -1.4742 -1.4210             -1.4742 -1.4210 TS154 154
155 TS160             -1.4742 -1.4210             -1.4742 -1.4210 TS160 155
156 TS178             -1.4742 -1.4210             -1.4742 -1.4210 TS178 156
157 TS180             -1.4742 -1.4210             -1.4742 -1.4210 TS180 157
158 TS184             -1.4742 -1.4210             -1.4742 -1.4210 TS184 158
159 TS189             -1.4742 -1.4210             -1.4742 -1.4210 TS189 159
160 TS199             -1.4742 -1.4210             -1.4742 -1.4210 TS199 160
161 TS228             -1.4742 -1.4210             -1.4742 -1.4210 TS228 161
162 TS245             -1.4742 -1.4210             -1.4742 -1.4210 TS245 162
163 TS248             -1.4742 -1.4210             -1.4742 -1.4210 TS248 163
164 TS254             -1.4742 -1.4210             -1.4742 -1.4210 TS254 164
165 TS261             -1.4742 -1.4210             -1.4742 -1.4210 TS261 165
166 TS263             -1.4742 -1.4210             -1.4742 -1.4210 TS263 166
167 TS269             -1.4742 -1.4210             -1.4742 -1.4210 TS269 167
168 TS279             -1.4742 -1.4210             -1.4742 -1.4210 TS279 168
169 TS322             -1.4742 -1.4210             -1.4742 -1.4210 TS322 169
170 TS330             -1.4742 -1.4210             -1.4742 -1.4210 TS330 170
171 TS331             -1.4742 -1.4210             -1.4742 -1.4210 TS331 171
172 TS347             -1.4742 -1.4210             -1.4742 -1.4210 TS347 172
173 TS358             -1.4742 -1.4210             -1.4742 -1.4210 TS358 173
174 TS362             -1.4742 -1.4210             -1.4742 -1.4210 TS362 174
175 TS433             -1.4742 -1.4210             -1.4742 -1.4210 TS433 175
176 TS436             -1.4742 -1.4210             -1.4742 -1.4210 TS436 176
177 TS439             -1.4742 -1.4210             -1.4742 -1.4210 TS439 177
178 TS444             -1.4742 -1.4210             -1.4742 -1.4210 TS444 178