T0639

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0639

3NYM from Neisseria meningitidis MC58

Target type: Server only

Target sequence:

>T0639 3NYM, Neisseria meningitidis MC58, 128 residues
SNAMETLNDIKKILINVGLYQGFDLTDPKVSEEVNHETANMKWIKDYTSDGNWDNEFKEDLKNFLDYMEVCQLALNDKNFKIASNSLFMAMIYAGNLSLIFDSIKTDISTLLSAEYKKNSFSWPSLDE

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nym

Jmol of T0639 structure : 3nym

PyMOL of T0639

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0639A0-1233-126
T0639B2-1245-127

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Seems to be very hard target

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

No good template found for now, needs more study

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No significant match found

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0639 T0639 T0639 T0639
First score First Z-score Best score Best Z-score
1 TS321 47.2220 43.6610 3.4671 3.5027 47.2220 43.6610 3.4671 3.5027 TS321 1
2 TS213 39.3160 38.5330 2.2125 2.6723 39.3160 38.5330 2.2125 2.6723 TS213 2
3 TS429 35.4700 34.1880 1.6022 1.9687 35.4700 34.1880 1.6022 1.9687 TS429 3
4 TS113 35.4700 34.1880 1.6022 1.9687 35.4700 34.1880 1.6022 1.9687 TS113 4
5 TS380 35.2560 33.6890 1.5682 1.8879 35.2560 33.6890 1.5682 1.8879 TS380 5
6 TS037 35.0430 33.3330 1.5344 1.8302 35.0430 33.3330 1.5344 1.8302 TS037 6
7 TS236 34.8290 28.4190 1.5005 1.0345 34.8290 28.4190 1.5005 1.0345 TS236 7
8 TS114 34.8290 28.4190 1.5005 1.0345 34.8290 28.4190 1.5005 1.0345 TS114 8
9 TS481 34.4020 17.1650 1.4327 -0.7879 37.6070 24.0740 1.9413 0.3309 TS481 9
10 TS253 34.3220 33.2630 1.4200 1.8189 34.3220 33.2630 1.4200 1.8189 TS253 10
11 TS490 33.9740 31.2680 1.3648 1.4958 34.1880 31.4810 1.3988 1.5303 TS490 11
12 TS094 33.3330 30.7690 1.2631 1.4150 33.3330 30.7690 1.2631 1.4150 TS094 12
13 TS407 33.3330 30.7690 1.2631 1.4150 35.2560 33.6890 1.5682 1.8879 TS407 13
14 TS047 33.1200 32.9770 1.2293 1.7726 33.1200 32.9770 1.2293 1.7726 TS047 14
15 TS350 33.1200 31.8380 1.2293 1.5881 33.1200 31.8380 1.2293 1.5881 TS350 15
16 TS244 32.9060 32.3360 1.1953 1.6688 33.1200 32.8350 1.2293 1.7496 TS244 16
17 TS361 32.9060 29.2020 1.1953 1.1613 43.3760 36.3960 2.8568 2.3262 TS361 17
18 TS104 32.6920 29.7010 1.1614 1.2421 34.6150 29.7720 1.4665 1.2536 TS104 18
19 TS395 32.0510 31.9090 1.0596 1.5996 33.9740 33.5470 1.3648 1.8649 TS395 19
20 TS419 31.6240 29.4870 0.9919 1.2074 47.2220 43.6610 3.4671 3.5027 TS419 20
21 TS428 31.6240 29.4870 0.9919 1.2074 33.5470 31.7660 1.2970 1.5765 TS428 21
22 TS418 30.7690 28.0630 0.8562 0.9768 31.1970 30.9120 0.9241 1.4382 TS418 22
23 TS457 30.5560 29.9860 0.8224 1.2882 33.5470 30.6270 1.2970 1.3920 TS457 23
24 TS229 30.1280 22.8630 0.7545 0.1348 30.3420 24.7860 0.7884 0.4462 TS229 24
25 TS470 29.9150 27.0660 0.7207 0.8154 33.5470 31.4100 1.2970 1.5188 TS470 25
26 TS173 28.6320 26.7810 0.5171 0.7692 28.6320 26.7810 0.5171 0.7692 TS173 26
27 TS056 28.6320 26.7810 0.5171 0.7692 28.6320 26.7810 0.5171 0.7692 TS056 27
28 TS273 28.6320 24.7860 0.5171 0.4462 33.7610 24.7860 1.3310 0.4462 TS273 28
29 TS001 28.6320 24.7860 0.5171 0.4462 33.7610 24.7860 1.3310 0.4462 TS001 29
30 TS075 28.6020 19.6330 0.5123 -0.3883 28.6020 27.9910 0.5123 0.9652 TS075 30
31 TS452 28.4190 25.7120 0.4833 0.5961 28.4190 25.7120 0.4833 0.5961 TS452 31
32 TS366 28.4190 17.4500 0.4833 -0.7418 38.9830 32.3450 2.1597 1.6702 TS366 32
33 TS063 28.2050 25.3560 0.4493 0.5385 45.3390 37.0760 3.1683 2.4364 TS063 33
34 TS214 28.1780 22.5280 0.4451 0.0805 28.1780 23.9320 0.4451 0.3079 TS214 34
35 TS307 27.7780 25.3560 0.3816 0.5385 27.7780 25.3560 0.3816 0.5385 TS307 35
36 TS409 27.5640 20.0140 0.3476 -0.3266 27.5640 24.6440 0.3476 0.4232 TS409 36
37 TS304 26.9230 22.5780 0.2459 0.0886 26.9230 22.5780 0.2459 0.0886 TS304 37
38 TS060 26.4960 23.5040 0.1781 0.2386 42.7350 35.2560 2.7550 2.1416 TS060 38
39 TS345 26.4960 21.5100 0.1781 -0.0843 26.4960 21.6520 0.1781 -0.0613 TS345 39
40 TS088 26.2820 23.2910 0.1442 0.2041 39.9570 36.9660 2.3142 2.4185 TS088 40
41 TS276 25.4270 24.6440 0.0085 0.4232 27.7780 25.3560 0.3816 0.5385 TS276 41
42 TS286 25.4270 24.6440 0.0085 0.4232 27.7780 25.3560 0.3816 0.5385 TS286 42
43 AL396 25.4270 23.7180 0.0085 0.2732 28.4190 26.1400 0.4833 0.6654 AL396 43
44 TS026 25.4270 19.7290 0.0085 -0.3727 25.6410 21.0830 0.0425 -0.1535 TS026 44
45 TS077 25.2140 23.3620 -0.0253 0.2156 26.0680 23.3620 0.1102 0.2156 TS077 45
46 TS391 25.0000 19.6330 -0.0593 -0.3883 25.0000 19.6330 -0.0593 -0.3883 TS391 46
47 TS477 24.3590 21.0830 -0.1610 -0.1535 26.4960 22.3650 0.1781 0.0541 TS477 47
48 TS014 23.9320 21.6520 -0.2287 -0.0613 29.4490 29.0250 0.6467 1.1326 TS014 48
49 TS028 23.0770 16.5240 -0.3644 -0.8918 23.0770 19.0880 -0.3644 -0.4765 TS028 49
50 TS080 22.8630 17.7350 -0.3984 -0.6956 32.6920 30.2710 1.1614 1.3344 TS080 50
51 TS002 22.8630 17.7350 -0.3984 -0.6956 32.6920 30.2710 1.1614 1.3344 TS002 51
52 TS319 22.6500 22.5070 -0.4322 0.0771 28.6320 26.7810 0.5171 0.7692 TS319 52
53 TS275 22.6500 22.5070 -0.4322 0.0771 24.5730 22.5070 -0.1270 0.0771 TS275 53
54 TS296 22.6500 22.5070 -0.4322 0.0771 28.6320 24.7860 0.5171 0.4462 TS296 54
55 TS291 22.6500 21.0830 -0.4322 -0.1535 23.9410 23.5880 -0.2273 0.2522 TS291 55
56 TS174 22.4580 21.1860 -0.4626 -0.1368 23.3050 22.5990 -0.3282 0.0920 TS174 56
57 TS435 22.4580 19.3500 -0.4626 -0.4341 27.1370 25.8550 0.2799 0.6193 TS435 57
58 TS117 22.4360 17.3080 -0.4661 -0.7648 22.6500 21.9370 -0.4322 -0.0152 TS117 58
59 TS282 22.0340 18.0790 -0.5299 -0.6399 22.0340 18.0790 -0.5299 -0.6399 TS282 59
60 TS314 22.0090 19.4440 -0.5339 -0.4189 22.0090 19.4440 -0.5339 -0.4189 TS314 60
61 TS127 21.7950 19.8010 -0.5678 -0.3611 35.0430 26.4960 1.5344 0.7231 TS127 61
62 TS215 21.5810 20.1570 -0.6018 -0.3034 29.9150 29.2020 0.7207 1.1613 TS215 62
63 TS119 21.5810 20.1570 -0.6018 -0.3034 29.9150 29.2020 0.7207 1.1613 TS119 63
64 TS355 21.1860 19.3500 -0.6645 -0.4341 28.4190 26.4250 0.4833 0.7116 TS355 64
65 RANDOM 21.15 18.63 -0.6702 -0.5507 21.15 18.63 -0.6702 -0.5507 RANDOM 65
66 TS328 20.9750 19.8450 -0.6980 -0.3540 20.9750 19.8450 -0.6980 -0.3540 TS328 66
67 TS302 20.9400 19.9430 -0.7035 -0.3381 23.0770 19.9430 -0.3644 -0.3381 TS302 67
68 TS142 20.9400 19.9430 -0.7035 -0.3381 23.0770 19.9430 -0.3644 -0.3381 TS142 68
69 TS220 20.9400 19.9430 -0.7035 -0.3381 23.0770 20.6550 -0.3644 -0.2228 TS220 69
70 TS447 20.9400 19.9430 -0.7035 -0.3381 23.0770 20.6550 -0.3644 -0.2228 TS447 70
71 TS103 20.5130 17.2360 -0.7713 -0.7765 33.1200 31.2680 1.2293 1.4958 TS103 71
72 TS055 20.3390 19.4920 -0.7989 -0.4111 26.4960 23.5040 0.1781 0.2386 TS055 72
73 TS264 20.1270 16.8790 -0.8325 -0.8343 22.2460 21.4690 -0.4963 -0.0910 TS264 73
74 TS166 19.9150 18.2910 -0.8662 -0.6056 31.6240 24.7860 0.9919 0.4462 TS166 74
75 TS208 19.9150 16.5250 -0.8662 -0.8916 25.0000 20.5840 -0.0593 -0.2343 TS208 75
76 TS165 19.8720 18.4470 -0.8730 -0.5803 31.4100 28.4190 0.9579 1.0345 TS165 76
77 TS476 19.8720 17.5930 -0.8730 -0.7186 19.8720 18.5900 -0.8730 -0.5572 TS476 77
78 TS449 19.8720 16.2390 -0.8730 -0.9379 19.8720 16.2390 -0.8730 -0.9379 TS449 78
79 TS453 19.8720 16.2390 -0.8730 -0.9379 19.8720 16.2390 -0.8730 -0.9379 TS453 79
80 TS346 19.8720 16.2390 -0.8730 -0.9379 19.8720 16.2390 -0.8730 -0.9379 TS346 80
81 TS218 19.6580 16.8800 -0.9070 -0.8341 21.3680 17.8060 -0.6356 -0.6841 TS218 81
82 TS171 19.4440 18.7320 -0.9409 -0.5342 19.4440 18.7320 -0.9409 -0.5342 TS171 82
83 TS102 19.0170 15.8120 -1.0087 -1.0070 24.5730 22.2930 -0.1270 0.0425 TS102 83
84 TS245 18.8560 11.0880 -1.0342 -1.7720 18.8560 11.0880 -1.0342 -1.7720 TS245 84
85 TS471 18.8030 17.3790 -1.0426 -0.7533 18.8030 17.3790 -1.0426 -0.7533 TS471 85
86 TS420 18.2200 17.9380 -1.1351 -0.6628 18.2200 17.9380 -1.1351 -0.6628 TS420 86
87 TS248 18.1620 14.6010 -1.1443 -1.2032 18.8560 15.0420 -1.0342 -1.1317 TS248 87
88 TS129 17.9490 13.6750 -1.1781 -1.3531 17.9490 13.6750 -1.1781 -1.3531 TS129 88
89 TS257 17.9490 13.5330 -1.1781 -1.3761 26.7090 23.2190 0.2119 0.1924 TS257 89
90 TS207 16.6670 13.9600 -1.3816 -1.3070 20.7630 18.2910 -0.7316 -0.6056 TS207 90
91 TS250 13.9830 10.5930 -1.8075 -1.8522 13.9830 10.9460 -1.8075 -1.7950 TS250 91
92 TS362 13.4620 11.3960 -1.8902 -1.7222 13.4620 11.3960 -1.8902 -1.7222 TS362 92
93 TS289 12.6070 9.8290 -2.0258 -1.9759 12.6070 9.8290 -2.0258 -1.9759 TS289 93
94 TS018 11.1110 9.8290 -2.2632 -1.9759 11.1110 9.8290 -2.2632 -1.9759 TS018 94
95 AL285 8.5470 7.2650 -2.6701 -2.3911 14.1030 13.5330 -1.7884 -1.3761 AL285 95
96 TS009             -0.6702 -0.5507             -0.6702 -0.5507 TS009 96
97 TS016             -0.6702 -0.5507             -0.6702 -0.5507 TS016 97
98 TS020             -0.6702 -0.5507             -0.6702 -0.5507 TS020 98
99 TS029             -0.6702 -0.5507             -0.6702 -0.5507 TS029 99
100 TS033             -0.6702 -0.5507             -0.6702 -0.5507 TS033 100
101 TS035             -0.6702 -0.5507             -0.6702 -0.5507 TS035 101
102 TS039             -0.6702 -0.5507             -0.6702 -0.5507 TS039 102
103 TS042             -0.6702 -0.5507             -0.6702 -0.5507 TS042 103
104 TS044             -0.6702 -0.5507             -0.6702 -0.5507 TS044 104
105 TS045             -0.6702 -0.5507             -0.6702 -0.5507 TS045 105
106 TS061             -0.6702 -0.5507             -0.6702 -0.5507 TS061 106
107 TS074             -0.6702 -0.5507             -0.6702 -0.5507 TS074 107
108 TS083             -0.6702 -0.5507             -0.6702 -0.5507 TS083 108
109 TS084             -0.6702 -0.5507             -0.6702 -0.5507 TS084 109
110 TS086             -0.6702 -0.5507             -0.6702 -0.5507 TS086 110
111 TS096             -0.6702 -0.5507             -0.6702 -0.5507 TS096 111
112 TS105             -0.6702 -0.5507             -0.6702 -0.5507 TS105 112
113 TS110             -0.6702 -0.5507             -0.6702 -0.5507 TS110 113
114 TS140             -0.6702 -0.5507             -0.6702 -0.5507 TS140 114
115 TS147             -0.6702 -0.5507             -0.6702 -0.5507 TS147 115
116 TS149             -0.6702 -0.5507             -0.6702 -0.5507 TS149 116
117 TS150             -0.6702 -0.5507             -0.6702 -0.5507 TS150 117
118 TS152             -0.6702 -0.5507             -0.6702 -0.5507 TS152 118
119 TS153             -0.6702 -0.5507             -0.6702 -0.5507 TS153 119
120 TS154             -0.6702 -0.5507             -0.6702 -0.5507 TS154 120
121 TS160             -0.6702 -0.5507             -0.6702 -0.5507 TS160 121
122 TS170             -0.6702 -0.5507             -0.6702 -0.5507 TS170 122
123 TS172             -0.6702 -0.5507             -0.6702 -0.5507 TS172 123
124 TS178             -0.6702 -0.5507             -0.6702 -0.5507 TS178 124
125 TS180             -0.6702 -0.5507             -0.6702 -0.5507 TS180 125
126 TS182             -0.6702 -0.5507             -0.6702 -0.5507 TS182 126
127 TS184             -0.6702 -0.5507             -0.6702 -0.5507 TS184 127
128 TS186             -0.6702 -0.5507             -0.6702 -0.5507 TS186 128
129 TS189             -0.6702 -0.5507             -0.6702 -0.5507 TS189 129
130 TS192             -0.6702 -0.5507             -0.6702 -0.5507 TS192 130
131 TS199             -0.6702 -0.5507             -0.6702 -0.5507 TS199 131
132 TS200             -0.6702 -0.5507             -0.6702 -0.5507 TS200 132
133 TS206             -0.6702 -0.5507             -0.6702 -0.5507 TS206 133
134 TS228             -0.6702 -0.5507             -0.6702 -0.5507 TS228 134
135 TS240             -0.6702 -0.5507             -0.6702 -0.5507 TS240 135
136 TS242             -0.6702 -0.5507             -0.6702 -0.5507 TS242 136
137 TS254             -0.6702 -0.5507             -0.6702 -0.5507 TS254 137
138 TS261             -0.6702 -0.5507             -0.6702 -0.5507 TS261 138
139 TS263             -0.6702 -0.5507             -0.6702 -0.5507 TS263 139
140 TS269             -0.6702 -0.5507             -0.6702 -0.5507 TS269 140
141 TS278             -0.6702 -0.5507             -0.6702 -0.5507 TS278 141
142 TS279             -0.6702 -0.5507             -0.6702 -0.5507 TS279 142
143 TS295             -0.6702 -0.5507             -0.6702 -0.5507 TS295 143
144 TS297             -0.6702 -0.5507             -0.6702 -0.5507 TS297 144
145 TS299             -0.6702 -0.5507             -0.6702 -0.5507 TS299 145
146 TS300             -0.6702 -0.5507             -0.6702 -0.5507 TS300 146
147 TS301             -0.6702 -0.5507             -0.6702 -0.5507 TS301 147
148 TS311             -0.6702 -0.5507             -0.6702 -0.5507 TS311 148
149 TS316             -0.6702 -0.5507             -0.6702 -0.5507 TS316 149
150 TS322             -0.6702 -0.5507             -0.6702 -0.5507 TS322 150
151 TS324             -0.6702 -0.5507             -0.6702 -0.5507 TS324 151
152 TS330             -0.6702 -0.5507             -0.6702 -0.5507 TS330 152
153 TS331             -0.6702 -0.5507             -0.6702 -0.5507 TS331 153
154 TS333             -0.6702 -0.5507             -0.6702 -0.5507 TS333 154
155 TS336             -0.6702 -0.5507             -0.6702 -0.5507 TS336 155
156 TS347             -0.6702 -0.5507             -0.6702 -0.5507 TS347 156
157 TS353             -0.6702 -0.5507             -0.6702 -0.5507 TS353 157
158 TS358             -0.6702 -0.5507             -0.6702 -0.5507 TS358 158
159 TS360             -0.6702 -0.5507             -0.6702 -0.5507 TS360 159
160 TS365             -0.6702 -0.5507             -0.6702 -0.5507 TS365 160
161 TS373             -0.6702 -0.5507             -0.6702 -0.5507 TS373 161
162 TS382             -0.6702 -0.5507             -0.6702 -0.5507 TS382 162
163 TS386             -0.6702 -0.5507             -0.6702 -0.5507 TS386 163
164 TS399             -0.6702 -0.5507             -0.6702 -0.5507 TS399 164
165 TS400             -0.6702 -0.5507             -0.6702 -0.5507 TS400 165
166 TS402             -0.6702 -0.5507             -0.6702 -0.5507 TS402 166
167 TS403             -0.6702 -0.5507             -0.6702 -0.5507 TS403 167
168 TS408             -0.6702 -0.5507             -0.6702 -0.5507 TS408 168
169 TS423             -0.6702 -0.5507             -0.6702 -0.5507 TS423 169
170 TS424             -0.6702 -0.5507             -0.6702 -0.5507 TS424 170
171 TS433             -0.6702 -0.5507             -0.6702 -0.5507 TS433 171
172 TS436             -0.6702 -0.5507             -0.6702 -0.5507 TS436 172
173 TS439             -0.6702 -0.5507             -0.6702 -0.5507 TS439 173
174 TS444             -0.6702 -0.5507             -0.6702 -0.5507 TS444 174
175 TS450             -0.6702 -0.5507             -0.6702 -0.5507 TS450 175
176 TS458             -0.6702 -0.5507             -0.6702 -0.5507 TS458 176
177 TS461             -0.6702 -0.5507             -0.6702 -0.5507 TS461 177
178 TS484             -0.6702 -0.5507             -0.6702 -0.5507 TS484 178