T0621

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0621

3NKG from unknown species

Target type: Human/Server

Target sequence:

>T0621 3NKG, unknown species, 172 residues
NPNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVWKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQINQDNTKKLIADNLYMTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEMIGRKVDFTIYINKRDK

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nkg

Jmol of T0621 structure : 3nkg

PyMOL of T0621

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0621A0-1692-170
T0621B0-1692-170

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

I think this is a very hard target.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

No good template found for now, needs more study

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

needs more analysis

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0621 T0621 T0621 T0621
First score First Z-score Best score Best Z-score
1 TS476 28.5500 23.9150 3.1894 3.3028 31.5090 26.3810 3.8798 4.0133 TS476 1
2 TS471 26.6270 21.1050 2.7406 2.4932 26.6270 21.1050 2.7406 2.4932 TS471 2
3 TS165 25.7400 20.3160 2.5337 2.2658 27.6630 22.6820 2.9824 2.9475 TS165 3
4 TS192 25.4440 20.9070 2.4646 2.4361 25.4440 20.9070 2.4646 2.4361 TS192 4
5 TS361 25.1480 20.6110 2.3955 2.3508 25.1480 20.6110 2.3955 2.3508 TS361 5
6 TS094 24.7040 18.8860 2.2919 1.8538 25.2960 20.1680 2.4301 2.2232 TS094 6
7 TS470 24.7040 18.8860 2.2919 1.8538 24.7040 18.8860 2.2919 1.8538 TS470 7
8 TS490 24.5560 18.9350 2.2574 1.8679 24.7040 19.0340 2.2919 1.8965 TS490 8
9 TS399 24.2600 21.4990 2.1883 2.6067 24.2600 21.4990 2.1883 2.6067 TS399 9
10 TS077 23.5210 18.9840 2.0159 1.8820 23.5210 18.9840 2.0159 1.8820 TS077 10
11 TS218 22.3370 18.9840 1.7396 1.8820 22.3370 19.1320 1.7396 1.9247 TS218 11
12 TS276 22.0410 18.6880 1.6705 1.7968 23.3730 21.0060 1.9813 2.4646 TS276 12
13 TS286 22.0410 18.6880 1.6705 1.7968 22.0410 18.6880 1.6705 1.7968 TS286 13
14 TS035 21.8930 14.0040 1.6360 0.4472 21.8930 14.0040 1.6360 0.4472 TS035 14
15 TS418 21.7460 17.5050 1.6017 1.4559 24.7040 22.5350 2.2919 2.9052 TS418 15
16 TS299 21.3020 18.5400 1.4981 1.7541 25.0000 22.9290 2.3610 3.0187 TS299 16
17 TS477 21.1540 19.0830 1.4636 1.9106 22.0410 19.0830 1.6705 1.9106 TS477 17
18 TS060 20.7100 17.6530 1.3600 1.4986 20.7100 17.9490 1.3600 1.5838 TS060 18
19 TS452 20.4140 18.2450 1.2909 1.6691 21.3020 18.3430 1.4981 1.6974 TS452 19
20 TS110 20.4140 18.2450 1.2909 1.6691 24.7040 18.8860 2.2919 1.8538 TS110 20
21 TS435 20.4140 17.2580 1.2909 1.3848 20.4140 17.2580 1.2909 1.3848 TS435 21
22 TS458 20.2660 15.4340 1.2563 0.8592 20.2660 15.4340 1.2563 0.8592 TS458 22
23 TS407 19.6750 16.1240 1.1184 1.0580 26.6270 21.1050 2.7406 2.4932 TS407 23
24 TS319 19.6750 15.0390 1.1184 0.7454 28.2540 24.1120 3.1203 3.3595 TS319 24
25 TS056 19.6750 15.0390 1.1184 0.7454 22.0410 15.8280 1.6705 0.9727 TS056 25
26 TS423 19.2310 15.8780 1.0148 0.9871 19.2310 15.8780 1.0148 0.9871 TS423 26
27 TS296 19.2310 14.3980 1.0148 0.5607 23.6690 20.6110 2.0504 2.3508 TS296 27
28 TS353 18.7870 15.3350 0.9112 0.8307 19.2310 15.7790 1.0148 0.9586 TS353 28
29 TS300 18.6390 13.4120 0.8767 0.2766 26.1830 22.5350 2.6370 2.9052 TS300 29
30 TS033 18.6390 13.4120 0.8767 0.2766 18.6390 13.4120 0.8767 0.2766 TS033 30
31 TS386 18.6390 13.1160 0.8767 0.1914 25.1480 19.3290 2.3955 1.9815 TS386 31
32 TS061 18.3430 16.5680 0.8076 1.1859 18.3430 16.6670 0.8076 1.2145 TS061 32
33 TS424 18.0470 16.4690 0.7386 1.1574 18.0470 16.4690 0.7386 1.1574 TS424 33
34 TS242 17.4560 13.8070 0.6007 0.3904 17.6040 14.0530 0.6352 0.4613 TS242 34
35 TS096 17.1600 13.9550 0.5316 0.4331 25.1480 20.7100 2.3955 2.3793 TS096 35
36 TS400 17.1600 12.4260 0.5316 -0.0075 18.9350 16.0750 0.9458 1.0439 TS400 36
37 TS321 16.2720 12.9190 0.3244 0.1346 18.6390 17.0120 0.8767 1.3139 TS321 37
38 TS199 16.2720 12.9190 0.3244 0.1346 16.2720 12.9190 0.3244 0.1346 TS199 38
39 TS037 16.1240 15.3350 0.2898 0.8307 16.1240 15.3350 0.2898 0.8307 TS037 39
40 TS402 15.9760 12.2290 0.2553 -0.0642 15.9760 13.1160 0.2553 0.1914 TS402 40
41 TS088 15.6800 13.5600 0.1862 0.3193 18.3430 16.7160 0.8076 1.2286 TS088 41
42 TS324 15.6800 12.9190 0.1862 0.1346 15.8280 13.5600 0.2208 0.3193 TS324 42
43 TS380 15.6800 11.4400 0.1862 -0.2915 25.2960 20.1680 2.4301 2.2232 TS380 43
44 TS481 15.3850 13.7570 0.1174 0.3760 15.3850 13.7570 0.1174 0.3760 TS481 44
45 TS113 15.3850 11.7850 0.1174 -0.1921 16.2720 15.2860 0.3244 0.8166 TS113 45
46 TS240 15.2370 12.3270 0.0829 -0.0360 15.2370 12.3270 0.0829 -0.0360 TS240 46
47 TS428 15.2370 12.3270 0.0829 -0.0360 24.7040 18.8860 2.2919 1.8538 TS428 47
48 TS236 15.2370 12.0810 0.0829 -0.1069 15.2370 12.0810 0.0829 -0.1069 TS236 48
49 TS114 15.2370 12.0810 0.0829 -0.1069 15.2370 13.5600 0.0829 0.3193 TS114 49
50 TS382 15.0890 12.7710 0.0483 0.0920 23.3730 18.9350 1.9813 1.8679 TS382 50
51 TS016 15.0890 12.4260 0.0483 -0.0075 16.4200 13.5110 0.3589 0.3052 TS016 51
52 TS174 14.9410 13.5110 0.0138 0.3052 23.0770 19.4280 1.9123 2.0100 TS174 52
53 TS153 14.9410 11.2920 0.0138 -0.3342 14.9410 11.2920 0.0138 -0.3342 TS153 53
54 TS149 14.7930 13.4120 -0.0207 0.2766 14.7930 13.4120 -0.0207 0.2766 TS149 54
55 TS147 14.7930 12.9190 -0.0207 0.1346 15.2370 13.3140 0.0829 0.2484 TS147 55
56 TS102 14.7930 12.3270 -0.0207 -0.0360 14.7930 12.9190 -0.0207 0.1346 TS102 56
57 TS182 14.6450 13.1160 -0.0553 0.1914 14.6450 13.1160 -0.0553 0.1914 TS182 57
58 AL285 14.6450 12.3770 -0.0553 -0.0216 14.6450 12.3770 -0.0553 -0.0216 AL285 58
59 TS208 14.6450 12.1300 -0.0553 -0.0927 17.0120 14.5960 0.4970 0.6178 TS208 59
60 TS419 14.4970 11.5380 -0.0898 -0.2633 16.2720 12.9190 0.3244 0.1346 TS419 60
61 TS166 14.4970 11.5380 -0.0898 -0.2633 15.5330 13.4620 0.1519 0.2910 TS166 61
62 TS253 14.3490 11.6860 -0.1243 -0.2207 14.3490 12.1790 -0.1243 -0.0786 TS253 62
63 TS273 14.3490 11.5880 -0.1243 -0.2489 19.8220 17.2580 1.1527 1.3848 TS273 63
64 TS001 14.3490 11.5880 -0.1243 -0.2489 19.8220 17.2580 1.1527 1.3848 TS001 64
65 TS173 14.3490 11.4890 -0.1243 -0.2774 19.9700 17.1100 1.1873 1.3421 TS173 65
66 TS316 14.3490 10.5030 -0.1243 -0.5615 16.4200 13.9550 0.3589 0.4331 TS316 66
67 TS457 14.2010 10.9470 -0.1589 -0.4336 14.2010 11.7850 -0.1589 -0.1921 TS457 67
68 TS275 14.0530 12.8700 -0.1934 0.1205 15.3850 12.8700 0.1174 0.1205 TS275 68
69 TS047 14.0530 11.9330 -0.1934 -0.1495 14.0530 11.9330 -0.1934 -0.1495 TS047 69
70 TS314 14.0530 10.6510 -0.1934 -0.5189 18.6390 15.1870 0.8767 0.7881 TS314 70
71 TS301 13.9050 12.4750 -0.2279 0.0067 19.8220 17.2580 1.1527 1.3848 TS301 71
72 TS200 13.9050 12.2290 -0.2279 -0.0642 16.1240 13.5110 0.2898 0.3052 TS200 72
73 TS328 13.9050 11.8340 -0.2279 -0.1780 13.9050 11.8340 -0.2279 -0.1780 TS328 73
74 TS345 13.7570 12.2780 -0.2625 -0.0501 13.7570 12.2780 -0.2625 -0.0501 TS345 74
75 TS297 13.7570 12.2780 -0.2625 -0.0501 14.3490 12.2780 -0.1243 -0.0501 TS297 75
76 TS083 13.7570 11.8840 -0.2625 -0.1636 18.1950 17.2090 0.7731 1.3706 TS083 76
77 TS449 13.7570 11.8340 -0.2625 -0.1780 13.7570 11.8340 -0.2625 -0.1780 TS449 77
78 TS453 13.7570 11.8340 -0.2625 -0.1780 13.7570 11.8340 -0.2625 -0.1780 TS453 78
79 TS346 13.7570 11.8340 -0.2625 -0.1780 13.7570 11.8340 -0.2625 -0.1780 TS346 79
80 TS408 13.6090 11.9820 -0.2970 -0.1354 18.7870 17.6040 0.9112 1.4844 TS408 80
81 TS429 13.6090 11.7850 -0.2970 -0.1921 18.4910 14.5460 0.8422 0.6034 TS429 81
82 TS172 13.4620 11.2920 -0.3313 -0.3342 17.4560 14.8920 0.6007 0.7031 TS172 82
83 TS014 13.4620 10.8970 -0.3313 -0.4480 13.4620 11.1930 -0.3313 -0.3627 TS014 83
84 TS215 13.3140 12.2290 -0.3659 -0.0642 14.4970 12.3270 -0.0898 -0.0360 TS215 84
85 TS409 13.3140 11.8340 -0.3659 -0.1780 13.3140 11.8340 -0.3659 -0.1780 TS409 85
86 TS080 13.3140 11.8340 -0.3659 -0.1780 34.0240 29.4870 4.4667 4.9082 TS080 86
87 TS002 13.3140 11.8340 -0.3659 -0.1780 34.0240 29.4870 4.4667 4.9082 TS002 87
88 TS366 13.3140 10.0100 -0.3659 -0.7036 16.7160 13.4620 0.4280 0.2910 TS366 88
89 TS055 13.1660 12.2780 -0.4004 -0.0501 14.9410 13.2640 0.0138 0.2340 TS055 89
90 TS119 13.1660 11.6860 -0.4004 -0.2207 16.4200 14.7440 0.3589 0.6604 TS119 90
91 TS063 13.0180 10.5520 -0.4349 -0.5474 14.3490 11.3910 -0.1243 -0.3057 TS063 91
92 TS207 13.0180 9.3200 -0.4349 -0.9024 16.1240 13.3630 0.2898 0.2625 TS207 92
93 TS117 12.8700 11.8340 -0.4695 -0.1780 12.8700 11.8340 -0.4695 -0.1780 TS117 93
94 TS229 12.8700 10.9960 -0.4695 -0.4195 12.8700 10.9960 -0.4695 -0.4195 TS229 94
95 TS127 12.7220 11.2920 -0.5040 -0.3342 12.7220 11.2920 -0.5040 -0.3342 TS127 95
96 TS213 12.7220 11.2920 -0.5040 -0.3342 14.2010 12.4260 -0.1589 -0.0075 TS213 96
97 TS295 12.7220 10.5030 -0.5040 -0.5615 25.2960 20.8580 2.4301 2.4220 TS295 97
98 TS391 12.7220 9.5660 -0.5040 -0.8315 12.7220 9.5660 -0.5040 -0.8315 TS391 98
99 RANDOM 12.64 10.30 -0.5231 -0.6200 12.64 10.30 -0.5231 -0.6200 RANDOM 99
100 TS355 12.4260 11.5880 -0.5731 -0.2489 14.3490 12.6730 -0.1243 0.0637 TS355 100
101 TS214 12.4260 10.8970 -0.5731 -0.4480 13.1660 10.9960 -0.4004 -0.4195 TS214 101
102 TS244 12.2780 11.2430 -0.6076 -0.3483 26.1830 22.5350 2.6370 2.9052 TS244 102
103 TS042 12.2780 11.0450 -0.6076 -0.4053 16.4200 13.8560 0.3589 0.4046 TS042 103
104 TS103 12.2780 10.0100 -0.6076 -0.7036 12.2780 10.0100 -0.6076 -0.7036 TS103 104
105 TS403 12.2780 9.9110 -0.6076 -0.7321 12.8700 11.4890 -0.4695 -0.2774 TS403 105
106 TS186 12.1300 10.8970 -0.6421 -0.4480 13.3140 10.8970 -0.3659 -0.4480 TS186 106
107 TS365 12.1300 10.7000 -0.6421 -0.5047 13.9050 11.6370 -0.2279 -0.2348 TS365 107
108 TS018 12.1300 10.6510 -0.6421 -0.5189 12.1300 10.6510 -0.6421 -0.5189 TS018 108
109 TS228 11.9820 10.4540 -0.6767 -0.5756 13.7570 13.0180 -0.2625 0.1631 TS228 109
110 TS264 11.9820 9.4180 -0.6767 -0.8741 13.0180 10.6510 -0.4349 -0.5189 TS264 110
111 TS104 11.8340 10.4540 -0.7112 -0.5756 17.8990 14.3000 0.7040 0.5325 TS104 111
112 TS395 11.8340 10.4540 -0.7112 -0.5756 15.8280 13.7570 0.2208 0.3760 TS395 112
113 TS484 11.8340 10.2070 -0.7112 -0.6468 13.9050 11.5880 -0.2279 -0.2489 TS484 113
114 TS302 11.8340 9.8130 -0.7112 -0.7603 14.3490 12.1790 -0.1243 -0.0786 TS302 114
115 TS142 11.8340 9.8130 -0.7112 -0.7603 14.3490 12.1790 -0.1243 -0.0786 TS142 115
116 TS360 11.8340 9.6650 -0.7112 -0.8030 11.8340 9.6650 -0.7112 -0.8030 TS360 116
117 TS026 11.8340 9.5660 -0.7112 -0.8315 14.7930 12.2290 -0.0207 -0.0642 TS026 117
118 TS307 11.5380 10.7000 -0.7803 -0.5047 14.2010 12.3770 -0.1589 -0.0216 TS307 118
119 TS075 11.5380 10.3060 -0.7803 -0.6183 12.5740 11.0450 -0.5385 -0.4053 TS075 119
120 TS450 11.5380 9.3690 -0.7803 -0.8882 18.6390 15.7790 0.8767 0.9586 TS450 120
121 TS129 11.3910 9.0730 -0.8146 -0.9735 12.8700 11.0950 -0.4695 -0.3909 TS129 121
122 TS289 11.2430 9.8620 -0.8491 -0.7462 11.2430 9.8620 -0.8491 -0.7462 TS289 122
123 TS350 11.0950 10.2070 -0.8836 -0.6468 11.8340 10.3550 -0.7112 -0.6042 TS350 123
124 TS311 11.0950 9.7140 -0.8836 -0.7888 11.0950 9.7140 -0.8836 -0.7888 TS311 124
125 TS373 11.0950 9.4180 -0.8836 -0.8741 12.1300 10.8970 -0.6421 -0.4480 TS373 125
126 TS291 11.0950 8.0370 -0.8836 -1.2720 13.7570 12.4750 -0.2625 0.0067 TS291 126
127 AL396 10.9470 10.1580 -0.9182 -0.6609 27.6630 23.0280 2.9824 3.0472 AL396 127
128 TS220 10.9470 9.7630 -0.9182 -0.7747 11.5380 10.7500 -0.7803 -0.4903 TS220 128
129 TS447 10.9470 9.7630 -0.9182 -0.7747 11.5380 10.7500 -0.7803 -0.4903 TS447 129
130 TS257 10.9470 9.5170 -0.9182 -0.8456 13.4620 12.1790 -0.3313 -0.0786 TS257 130
131 TS045 10.9470 9.3200 -0.9182 -0.9024 14.2010 13.2640 -0.1589 0.2340 TS045 131
132 TS029 10.7990 9.6150 -0.9527 -0.8174 11.2430 10.3550 -0.8491 -0.6042 TS029 132
133 TS278 10.7990 8.9740 -0.9527 -1.0020 10.7990 8.9740 -0.9527 -1.0020 TS278 133
134 TS333 10.5030 9.8130 -1.0218 -0.7603 12.2780 10.2070 -0.6076 -0.6468 TS333 134
135 TS420 10.5030 9.6650 -1.0218 -0.8030 10.5030 9.6650 -1.0218 -0.8030 TS420 135
136 TS084 10.2070 8.3330 -1.0908 -1.1867 14.4970 13.1160 -0.0898 0.1914 TS084 136
137 TS206 10.0590 8.3830 -1.1254 -1.1723 10.0590 8.3830 -1.1254 -1.1723 TS206 137
138 TS028 9.9110 9.0730 -1.1599 -0.9735 14.2010 12.5250 -0.1589 0.0211 TS028 138
139 TS461 9.9110 8.6290 -1.1599 -1.1014 10.7990 9.1220 -0.9527 -0.9594 TS461 139
140 TS336 9.7630 8.4810 -1.1945 -1.1441 11.5380 9.8130 -0.7803 -0.7603 TS336 140
141 TS304 9.7630 8.2840 -1.1945 -1.2008 17.6040 14.2500 0.6352 0.5181 TS304 141
142 TS178 9.7630 7.9880 -1.1945 -1.2861 9.7630 7.9880 -1.1945 -1.2861 TS178 142
143 TS248 9.7630 7.9390 -1.1945 -1.3003 9.9110 8.0870 -1.1599 -1.2576 TS248 143
144 TS250 8.7280 6.9530 -1.4360 -1.5843 9.1720 7.6920 -1.3324 -1.3714 TS250 144
145 TS171 7.8400 7.1500 -1.6432 -1.5276 7.8400 7.1500 -1.6432 -1.5276 TS171 145
146 TS436 7.6920 7.1990 -1.6777 -1.5135 9.7630 8.5310 -1.1945 -1.1297 TS436 146
147 TS009             -0.5231 -0.6200             -0.5231 -0.6200 TS009 147
148 TS020             -0.5231 -0.6200             -0.5231 -0.6200 TS020 148
149 TS039             -0.5231 -0.6200             -0.5231 -0.6200 TS039 149
150 TS044             -0.5231 -0.6200             -0.5231 -0.6200 TS044 150
151 TS074             -0.5231 -0.6200             -0.5231 -0.6200 TS074 151
152 TS086             -0.5231 -0.6200             -0.5231 -0.6200 TS086 152
153 TS105             -0.5231 -0.6200             -0.5231 -0.6200 TS105 153
154 TS140             -0.5231 -0.6200             -0.5231 -0.6200 TS140 154
155 TS150             -0.5231 -0.6200             -0.5231 -0.6200 TS150 155
156 TS152             -0.5231 -0.6200             -0.5231 -0.6200 TS152 156
157 TS154             -0.5231 -0.6200             -0.5231 -0.6200 TS154 157
158 TS160             -0.5231 -0.6200             -0.5231 -0.6200 TS160 158
159 TS170             -0.5231 -0.6200             -0.5231 -0.6200 TS170 159
160 TS180             -0.5231 -0.6200             -0.5231 -0.6200 TS180 160
161 TS184             -0.5231 -0.6200             -0.5231 -0.6200 TS184 161
162 TS189             -0.5231 -0.6200             -0.5231 -0.6200 TS189 162
163 TS245             -0.5231 -0.6200             -0.5231 -0.6200 TS245 163
164 TS254             -0.5231 -0.6200             -0.5231 -0.6200 TS254 164
165 TS261             -0.5231 -0.6200             -0.5231 -0.6200 TS261 165
166 TS263             -0.5231 -0.6200             -0.5231 -0.6200 TS263 166
167 TS269             -0.5231 -0.6200             -0.5231 -0.6200 TS269 167
168 TS279             -0.5231 -0.6200             -0.5231 -0.6200 TS279 168
169 TS282             -0.5231 -0.6200             -0.5231 -0.6200 TS282 169
170 TS322             -0.5231 -0.6200             -0.5231 -0.6200 TS322 170
171 TS330             -0.5231 -0.6200             -0.5231 -0.6200 TS330 171
172 TS331             -0.5231 -0.6200             -0.5231 -0.6200 TS331 172
173 TS347             -0.5231 -0.6200             -0.5231 -0.6200 TS347 173
174 TS358             -0.5231 -0.6200             -0.5231 -0.6200 TS358 174
175 TS362             -0.5231 -0.6200             -0.5231 -0.6200 TS362 175
176 TS433             -0.5231 -0.6200             -0.5231 -0.6200 TS433 176
177 TS439             -0.5231 -0.6200             -0.5231 -0.6200 TS439 177
178 TS444             -0.5231 -0.6200             -0.5231 -0.6200 TS444 178