T0588

Targets
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519 520 521 522
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527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
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563 564 565 566
567 568 569 570
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579 580 581 582
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631 632 633 634
635 636 637 638
639 640 641 642
643      

T0588

ZP_02064699.1 from Bacteroides ovatus ATCC 8483

Target type: Human/Server

Target sequence:

>T0588 ZP_02064699.1, Bacteroides ovatus ATCC 8483, 400 residues
MKNLLVCTLLFAYAFTLNAQVANTRIYAAEKLAKVKEKADSPLYAPAVKTLLRDADKALKMTPPSVMDKTMTADSGDKHDYMSMGPYWWPDPSKPDGLPYIRKDGQRNPELDKLDRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENSKAFTPKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFPEKRLFAQIEPDGKQPLELARTTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQQIKEWDKKQEEACWILRRASFFDPKAGYEAIGAQFRETPANKRIHLIYSLE

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3nfv

Jmol of T0588 structure : 3nfv

PyMOL of T0588

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0588A0-40020-400

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Alginate lyase A1-III, multihelical,up to seven alpha-hairpins are arranged in closed circular array, incomplete toroid.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1qaz_A | PyMOL of 1qaz A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Alginate lyase (PF05426).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0588 T0588 T0588 T0588
First score First Z-score Best score Best Z-score
1 TS077 47.1130 36.7670 1.3916 1.2166 47.1130 36.7670 1.3916 1.2166 TS077 1
2 TS286 47.1130 36.7670 1.3916 1.2166 47.1130 36.9640 1.3916 1.2527 TS286 2
3 TS386 46.9160 36.5490 1.3587 1.1766 47.5720 38.7800 1.4685 1.5856 TS386 3
4 TS297 46.9160 35.7170 1.3587 1.0241 47.3100 36.7240 1.4246 1.2087 TS297 4
5 TS470 46.7850 37.2920 1.3367 1.3128 46.8500 38.8890 1.3476 1.6056 TS470 5
6 TS276 46.7190 36.9640 1.3257 1.2527 46.7190 37.0080 1.3257 1.2607 TS276 6
7 TS418 46.7190 36.1770 1.3257 1.1084 46.7190 36.5700 1.3257 1.1804 TS418 7
8 TS096 46.6540 34.7550 1.3148 0.8477 47.5720 36.0670 1.4685 1.0882 TS096 8
9 TS299 46.5220 36.4610 1.2927 1.1605 47.4410 38.3860 1.4466 1.5134 TS299 9
10 TS113 46.3250 37.4890 1.2597 1.3489 46.7190 38.9760 1.3257 1.6215 TS113 10
11 TS037 46.3250 36.3950 1.2597 1.1484 46.3250 36.3950 1.2597 1.1484 TS037 11
12 TS088 46.2600 36.9860 1.2488 1.2567 46.2600 36.9860 1.2488 1.2567 TS088 12
13 TS094 46.1940 36.0020 1.2378 1.0763 46.8500 38.8890 1.3476 1.6056 TS094 13
14 TS240 46.1940 36.0020 1.2378 1.0763 46.1940 36.0020 1.2378 1.0763 TS240 14
15 TS419 46.1940 36.0020 1.2378 1.0763 46.1940 36.0020 1.2378 1.0763 TS419 15
16 TS407 46.1940 36.0020 1.2378 1.0763 46.3910 36.6360 1.2707 1.1925 TS407 16
17 TS399 46.1940 36.0020 1.2378 1.0763 47.1130 36.9640 1.3916 1.2527 TS399 17
18 TS428 46.1940 36.0020 1.2378 1.0763 46.7850 37.2920 1.3367 1.3128 TS428 18
19 TS192 46.1940 36.0020 1.2378 1.0763 46.1940 36.0020 1.2378 1.0763 TS192 19
20 TS110 46.1940 36.0020 1.2378 1.0763 46.1940 36.0020 1.2378 1.0763 TS110 20
21 TS490 46.1290 35.9800 1.2269 1.0723 47.5070 38.4950 1.4576 1.5334 TS490 21
22 TS033 45.9970 35.3240 1.2048 0.9520 45.9970 35.3240 1.2048 0.9520 TS033 22
23 TS147 45.9320 34.7770 1.1939 0.8517 45.9320 34.9960 1.1939 0.8919 TS147 23
24 TS400 45.1440 34.9960 1.0619 0.8919 46.0630 35.7170 1.2158 1.0241 TS400 24
25 TS114 44.8820 36.2640 1.0181 1.1243 44.8820 36.2640 1.0181 1.1243 TS114 25
26 TS319 44.4230 35.3240 0.9412 0.9520 44.4230 36.6360 0.9412 1.1925 TS319 26
27 TS273 44.4230 35.3240 0.9412 0.9520 44.4230 35.3240 0.9412 0.9520 TS273 27
28 TS001 44.4230 35.3240 0.9412 0.9520 44.4230 35.3240 0.9412 0.9520 TS001 28
29 TS016 44.1600 35.3890 0.8972 0.9639 44.7510 36.3080 0.9961 1.1324 TS016 29
30 TS291 43.9630 36.2200 0.8642 1.1163 44.9480 37.5550 1.0291 1.3610 TS291 30
31 TS402 43.7660 34.4490 0.8312 0.7916 46.4570 35.4330 1.2818 0.9720 TS402 31
32 TS295 43.3730 34.5360 0.7654 0.8076 43.9630 35.0610 0.8642 0.9038 TS295 32
33 TS366 43.3730 32.0210 0.7654 0.3465 43.3730 34.0550 0.7654 0.7194 TS366 33
34 TS380 43.2410 34.6240 0.7433 0.8237 46.8500 38.8890 1.3476 1.6056 TS380 34
35 TS429 43.2410 34.5140 0.7433 0.8035 43.8320 35.0390 0.8423 0.8998 TS429 35
36 TS449 43.0450 36.1770 0.7105 1.1084 43.0450 36.1770 0.7105 1.1084 TS449 36
37 TS453 43.0450 36.1770 0.7105 1.1084 43.0450 36.1770 0.7105 1.1084 TS453 37
38 TS346 43.0450 36.1770 0.7105 1.1084 43.0450 36.1770 0.7105 1.1084 TS346 38
39 TS408 42.9130 33.5080 0.6884 0.6191 44.4880 33.5080 0.9521 0.6191 TS408 39
40 TS063 42.5850 34.0550 0.6335 0.7194 43.3730 34.0550 0.7654 0.7194 TS063 40
41 TS199 42.5850 34.0550 0.6335 0.7194 42.5850 34.0550 0.6335 0.7194 TS199 41
42 AL396 42.5200 34.2080 0.6226 0.7474 42.5200 34.2080 0.6226 0.7474 AL396 42
43 TS129 42.5200 33.8580 0.6226 0.6833 43.1100 33.8580 0.7214 0.6833 TS129 43
44 TS236 42.5200 33.8580 0.6226 0.6833 42.5200 33.8580 0.6226 0.6833 TS236 44
45 TS104 42.3230 35.0170 0.5896 0.8957 42.3230 35.0170 0.5896 0.8957 TS104 45
46 TS061 42.0600 34.3610 0.5455 0.7755 42.0600 35.2580 0.5455 0.9399 TS061 46
47 TS484 41.9950 31.7150 0.5347 0.2904 41.9950 32.5900 0.5347 0.4508 TS484 47
48 TS409 41.5350 30.8840 0.4576 0.1380 41.5350 30.8840 0.4576 0.1380 TS409 48
49 TS324 41.4040 32.6990 0.4357 0.4708 41.4700 33.9240 0.4468 0.6954 TS324 49
50 TS304 41.2070 33.2020 0.4027 0.5630 41.2070 33.2020 0.4027 0.5630 TS304 50
51 TS395 41.1420 35.2800 0.3918 0.9440 43.1760 35.3460 0.7324 0.9561 TS395 51
52 TS361 41.1420 31.9990 0.3918 0.3424 42.1260 32.5240 0.5566 0.4387 TS361 52
53 TS171 41.0760 31.1460 0.3808 0.1861 41.0760 31.1460 0.3808 0.1861 TS171 53
54 TS458 41.0760 30.7090 0.3808 0.1060 41.9290 32.5240 0.5236 0.4387 TS458 54
55 TS102 40.9450 33.1150 0.3588 0.5470 41.8640 33.1150 0.5127 0.5470 TS102 55
56 TS382 40.8140 31.4960 0.3369 0.2502 47.5070 38.4080 1.4576 1.5174 TS382 56
57 TS353 40.6170 33.5300 0.3039 0.6231 40.6170 33.5300 0.3039 0.6231 TS353 57
58 TS080 40.4860 31.9550 0.2820 0.3344 40.4860 31.9550 0.2820 0.3344 TS080 58
59 TS119 40.4860 31.9550 0.2820 0.3344 40.9450 31.9550 0.3588 0.3344 TS119 59
60 TS242 40.3540 31.2550 0.2599 0.2061 40.3540 31.6710 0.2599 0.2823 TS242 60
61 TS307 40.3540 29.2870 0.2599 -0.1547 40.3540 30.7960 0.2599 0.1219 TS307 61
62 TS002 40.2890 30.4460 0.2490 0.0577 40.2890 30.5990 0.2490 0.0858 TS002 62
63 TS166 40.1570 30.3150 0.2269 0.0337 40.1570 30.3150 0.2269 0.0337 TS166 63
64 TS026 40.1570 30.2490 0.2269 0.0216 40.1570 33.0270 0.2269 0.5309 TS026 64
65 TS477 40.0260 32.0650 0.2050 0.3545 47.1130 36.9640 1.3916 1.2527 TS477 65
66 TS435 40.0260 32.0650 0.2050 0.3545 41.1420 33.2240 0.3918 0.5670 TS435 66
67 TS165 40.0260 30.7090 0.2050 0.1060 40.0260 31.3870 0.2050 0.2302 TS165 67
68 TS215 40.0260 30.4240 0.2050 0.0537 40.2890 30.4460 0.2490 0.0577 TS215 68
69 TS302 39.9610 29.6370 0.1941 -0.0906 39.9610 29.6370 0.1941 -0.0906 TS302 69
70 TS142 39.9610 29.6370 0.1941 -0.0906 39.9610 29.6370 0.1941 -0.0906 TS142 70
71 TS220 39.9610 29.6370 0.1941 -0.0906 39.9610 29.6370 0.1941 -0.0906 TS220 71
72 TS447 39.9610 29.6370 0.1941 -0.0906 39.9610 29.6370 0.1941 -0.0906 TS447 72
73 TS045 39.8290 33.0490 0.1720 0.5349 40.3540 34.9740 0.2599 0.8879 TS045 73
74 TS047 39.8290 31.8680 0.1720 0.3184 39.8290 31.8680 0.1720 0.3184 TS047 74
75 TS009 39.8290 30.7960 0.1720 0.1219 40.8140 32.1080 0.3369 0.3624 TS009 75
76 TS301 39.7640 32.2400 0.1611 0.3866 40.6820 32.2400 0.3148 0.3866 TS301 76
77 TS127 39.7640 30.1840 0.1611 0.0097 39.7640 30.1840 0.1611 0.0097 TS127 77
78 TS457 39.6330 32.2400 0.1392 0.3866 40.9450 35.0170 0.3588 0.8957 TS457 78
79 TS278 39.5670 31.8240 0.1281 0.3104 39.5670 31.8240 0.1281 0.3104 TS278 79
80 TS172 39.5670 31.6050 0.1281 0.2702 41.0760 34.1860 0.3808 0.7434 TS172 80
81 TS018 39.3700 29.3960 0.0951 -0.1348 39.3700 31.7590 0.0951 0.2984 TS018 81
82 TS452 39.3040 30.6870 0.0841 0.1019 39.8290 31.0800 0.1720 0.1740 TS452 82
83 TS275 39.1730 31.2770 0.0621 0.2101 42.3230 36.6360 0.5896 1.1925 TS275 83
84 TS149 39.1730 31.2770 0.0621 0.2101 39.1730 31.2770 0.0621 0.2101 TS149 84
85 TS218 39.1730 31.0370 0.0621 0.1661 39.1730 31.1680 0.0621 0.1901 TS218 85
86 TS481 39.1730 29.1340 0.0621 -0.1828 41.1420 33.7490 0.3918 0.6633 TS481 86
87 TS436 39.1080 31.6930 0.0513 0.2863 39.1080 31.6930 0.0513 0.2863 TS436 87
88 TS420 39.1080 30.4900 0.0513 0.0658 39.1080 30.4900 0.0513 0.0658 TS420 88
89 TS471 39.1080 30.4900 0.0513 0.0658 39.1080 30.4900 0.0513 0.0658 TS471 89
90 TS476 38.9110 29.8560 0.0183 -0.0504 38.9110 29.8560 0.0183 -0.0504 TS476 90
91 TS208 38.3860 30.7310 -0.0696 0.1100 40.4860 33.8360 0.2820 0.6792 TS208 91
92 TS311 38.2550 30.9710 -0.0916 0.1540 39.3700 31.6930 0.0951 0.2863 TS311 92
93 TS253 38.0580 32.5900 -0.1246 0.4508 39.6330 32.5900 0.1392 0.4508 TS253 93
94 TS028 37.9920 29.8990 -0.1356 -0.0425 37.9920 29.8990 -0.1356 -0.0425 TS028 94
95 TS314 37.7950 29.9650 -0.1686 -0.0304 37.7950 29.9650 -0.1686 -0.0304 TS314 95
96 TS174 37.7950 29.7460 -0.1686 -0.0706 37.7950 29.7460 -0.1686 -0.0706 TS174 96
97 TS035 37.6640 29.7900 -0.1905 -0.0625 37.6640 29.7900 -0.1905 -0.0625 TS035 97
98 TS056 37.6640 29.0030 -0.1905 -0.2068 41.0760 32.6990 0.3808 0.4708 TS056 98
99 TS173 37.2700 27.6900 -0.2565 -0.4475 38.5170 33.4860 -0.0477 0.6151 TS173 99
100 TS360 37.0080 30.0520 -0.3004 -0.0145 38.1890 31.4960 -0.1026 0.2502 TS360 100
101 TS424 36.2860 26.7940 -0.4213 -0.6118 45.2760 36.3080 1.0840 1.1324 TS424 101
102 TS300 36.1550 26.5750 -0.4432 -0.6519 42.5200 34.0770 0.6226 0.7234 TS300 102
103 TS450 36.0890 28.8710 -0.4543 -0.2310 36.0890 28.8710 -0.4543 -0.2310 TS450 103
104 TS365 35.9580 30.4020 -0.4762 0.0497 35.9580 30.4020 -0.4762 0.0497 TS365 104
105 TS186 35.8920 27.8650 -0.4872 -0.4154 35.8920 27.8650 -0.4872 -0.4154 TS186 105
106 TS206 35.8270 28.6310 -0.4981 -0.2750 35.8270 28.6310 -0.4981 -0.2750 TS206 106
107 TS296 35.8270 27.1870 -0.4981 -0.5397 44.4230 35.3240 0.9412 0.9520 TS296 107
108 TS214 35.8270 25.3720 -0.4981 -0.8725 35.8270 26.2250 -0.4981 -0.7161 TS214 108
109 TS289 35.7610 26.9030 -0.5092 -0.5918 35.7610 26.9030 -0.5092 -0.5918 TS289 109
110 TS321 35.5640 23.7970 -0.5422 -1.1612 42.5200 34.0770 0.6226 0.7234 TS321 110
111 TS117 34.7110 28.5000 -0.6850 -0.2990 34.7110 28.5000 -0.6850 -0.2990 TS117 111
112 AL285 34.3830 29.7030 -0.7399 -0.0785 36.4170 29.7030 -0.3993 -0.0785 AL285 112
113 TS213 34.0550 28.2370 -0.7948 -0.3472 38.7140 30.3590 -0.0147 0.0418 TS213 113
114 TS055 32.2830 25.0220 -1.0916 -0.9366 39.1080 31.7370 0.0513 0.2944 TS055 114
115 TS207 31.8900 21.7850 -1.1574 -1.5301 44.1600 35.3670 0.8972 0.9599 TS207 115
116 TS250 31.2340 24.3220 -1.2672 -1.0650 37.8610 28.0400 -0.1575 -0.3834 TS250 116
117 TS029 30.8400 22.9220 -1.3332 -1.3216 39.8950 32.5460 0.1830 0.4427 TS029 117
118 TS403 28.6750 20.9760 -1.6957 -1.6784 28.6750 21.4790 -1.6957 -1.5862 TS403 118
119 TS333 26.1150 21.8290 -2.1243 -1.5220 26.1150 21.8290 -2.1243 -1.5220 TS333 119
120 TS423 24.2130 17.8040 -2.4428 -2.2599 24.2130 17.8040 -2.4428 -2.2599 TS423 120
121 TS245 23.8850 18.8540 -2.4977 -2.0674 23.8850 18.8540 -2.4977 -2.0674 TS245 121
122 TS154 19.9480 15.7920 -3.1570 -2.6288 19.9480 15.7920 -3.1570 -2.6288 TS154 122
123 TS182 12.7950 9.5800 -4.3547 -3.7676 12.7950 9.5800 -4.3547 -3.7676 TS182 123
124 TS042 11.8770 11.2200 -4.5084 -3.4670 12.0730 11.2200 -4.4756 -3.4670 TS042 124
125 TS328 11.8770 10.0830 -4.5084 -3.6754 11.8770 10.0830 -4.5084 -3.6754 TS328 125
126 TS316 11.8110 10.9800 -4.5195 -3.5110 12.0730 11.2420 -4.4756 -3.4629 TS316 126
127 TS350 11.4830 10.4330 -4.5744 -3.6112 23.4250 16.6670 -2.5748 -2.4684 TS350 127
128 TS355 10.1710 9.5580 -4.7941 -3.7716 10.1710 9.5580 -4.7941 -3.7716 TS355 128
129 TS257 10.1710 9.1430 -4.7941 -3.8477 11.1550 10.1920 -4.6293 -3.6554 TS257 129
130 RANDOM 10.04 8.43 -4.8160 -3.9784 10.04 8.43 -4.8160 -3.9784 RANDOM 130
131 TS200 9.6460 8.3550 -4.8820 -3.9922 11.4170 10.4550 -4.5854 -3.6072 TS200 131
132 TS084 9.0550 8.1150 -4.9809 -4.0362 9.0550 8.1150 -4.9809 -4.0362 TS084 132
133 TS244 8.9900 8.3330 -4.9918 -3.9962 39.1730 31.2550 0.0621 0.2061 TS244 133
134 TS461 8.5960 7.8740 -5.0578 -4.0804 39.9610 32.2180 0.1941 0.3826 TS461 134
135 TS229 8.0050 6.5180 -5.1568 -4.3290 8.0050 7.0870 -5.1568 -4.2247 TS229 135
136 TS248 7.5460 6.3650 -5.2336 -4.3570 7.6120 6.9550 -5.2226 -4.2489 TS248 136
137 TS336 5.7090 5.0960 -5.5412 -4.5897 5.7090 5.0960 -5.5412 -4.5897 TS336 137
138 TS014             -4.8160 -3.9784             -4.8160 -3.9784 TS014 138
139 TS020             -4.8160 -3.9784             -4.8160 -3.9784 TS020 139
140 TS039             -4.8160 -3.9784             -4.8160 -3.9784 TS039 140
141 TS044             -4.8160 -3.9784             -4.8160 -3.9784 TS044 141
142 TS060             -4.8160 -3.9784             -4.8160 -3.9784 TS060 142
143 TS074             -4.8160 -3.9784             -4.8160 -3.9784 TS074 143
144 TS075             -4.8160 -3.9784             -4.8160 -3.9784 TS075 144
145 TS083             -4.8160 -3.9784             -4.8160 -3.9784 TS083 145
146 TS086             -4.8160 -3.9784             -4.8160 -3.9784 TS086 146
147 TS103             -4.8160 -3.9784             -4.8160 -3.9784 TS103 147
148 TS105             -4.8160 -3.9784             -4.8160 -3.9784 TS105 148
149 TS140             -4.8160 -3.9784             -4.8160 -3.9784 TS140 149
150 TS150             -4.8160 -3.9784             -4.8160 -3.9784 TS150 150
151 TS152             -4.8160 -3.9784             -4.8160 -3.9784 TS152 151
152 TS153             -4.8160 -3.9784             -4.8160 -3.9784 TS153 152
153 TS160             -4.8160 -3.9784             -4.8160 -3.9784 TS160 153
154 TS170             -4.8160 -3.9784             -4.8160 -3.9784 TS170 154
155 TS178             -4.8160 -3.9784             -4.8160 -3.9784 TS178 155
156 TS180             -4.8160 -3.9784             -4.8160 -3.9784 TS180 156
157 TS184             -4.8160 -3.9784             -4.8160 -3.9784 TS184 157
158 TS189             -4.8160 -3.9784             -4.8160 -3.9784 TS189 158
159 TS228             -4.8160 -3.9784             -4.8160 -3.9784 TS228 159
160 TS254             -4.8160 -3.9784             -4.8160 -3.9784 TS254 160
161 TS261             -4.8160 -3.9784             -4.8160 -3.9784 TS261 161
162 TS263             -4.8160 -3.9784             -4.8160 -3.9784 TS263 162
163 TS264             -4.8160 -3.9784             -4.8160 -3.9784 TS264 163
164 TS269             -4.8160 -3.9784             -4.8160 -3.9784 TS269 164
165 TS279             -4.8160 -3.9784             -4.8160 -3.9784 TS279 165
166 TS282             -4.8160 -3.9784             -4.8160 -3.9784 TS282 166
167 TS322             -4.8160 -3.9784             -4.8160 -3.9784 TS322 167
168 TS330             -4.8160 -3.9784             -4.8160 -3.9784 TS330 168
169 TS331             -4.8160 -3.9784             -4.8160 -3.9784 TS331 169
170 TS345             -4.8160 -3.9784             -4.8160 -3.9784 TS345 170
171 TS347             -4.8160 -3.9784             -4.8160 -3.9784 TS347 171
172 TS358             -4.8160 -3.9784             -4.8160 -3.9784 TS358 172
173 TS362             -4.8160 -3.9784             -4.8160 -3.9784 TS362 173
174 TS373             -4.8160 -3.9784             -4.8160 -3.9784 TS373 174
175 TS391             -4.8160 -3.9784             -4.8160 -3.9784 TS391 175
176 TS433             -4.8160 -3.9784             -4.8160 -3.9784 TS433 176
177 TS439             -4.8160 -3.9784             -4.8160 -3.9784 TS439 177
178 TS444             -4.8160 -3.9784             -4.8160 -3.9784 TS444 178