T0559

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0559

BvR153 from unknown species

Target type: Server only

Target sequence:

>T0559 BvR153, unknown species, 69 residues
MKMLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKLV

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l01

Jmol of T0559 structure : 2l01

PyMOL of T0559

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0559A1-771-69

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Winged helix DNA-binding domain contains a small beta-sheet (wing)

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2vxz_A | PyMOL of 2vxz A 5-67, part of HHpred server template 2vxz_A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

DUF2582: Protein of unknown function (PF10771).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0559 T0559 T0559 T0559
First score First Z-score Best score Best Z-score
1 TS395 92.7540 90.8210 1.7010 1.9571 92.7540 90.8210 1.7010 1.9571 TS395 1
2 TS321 92.3910 91.6670 1.6796 2.0064 92.3910 91.6670 1.6796 2.0064 TS321 2
3 TS037 91.6670 90.2170 1.6369 1.9220 91.6670 90.2170 1.6369 1.9220 TS037 3
4 TS117 86.5940 80.5560 1.3376 1.3596 86.5940 80.5560 1.3376 1.3596 TS117 4
5 TS490 83.6960 77.8990 1.1666 1.2049 84.0580 80.9180 1.1880 1.3806 TS490 5
6 TS094 81.5220 78.6230 1.0384 1.2470 81.5220 79.2270 1.0384 1.2822 TS094 6
7 TS077 81.5220 78.6230 1.0384 1.2470 81.5220 78.6230 1.0384 1.2470 TS077 7
8 TS286 81.5220 78.6230 1.0384 1.2470 81.5220 78.6230 1.0384 1.2470 TS286 8
9 TS428 81.1590 79.2270 1.0170 1.2822 81.1590 79.2270 1.0170 1.2822 TS428 9
10 TS380 81.1590 78.7440 1.0170 1.2541 81.1590 78.7440 1.0170 1.2541 TS380 10
11 TS088 80.7970 76.4490 0.9956 1.1205 89.4930 88.5270 1.5086 1.8236 TS088 11
12 TS276 80.7970 76.2080 0.9956 1.1065 80.7970 76.2080 0.9956 1.1065 TS276 12
13 TS113 80.7970 72.5850 0.9956 0.8956 81.5220 78.1400 1.0384 1.2189 TS113 13
14 TS240 80.4350 75.1210 0.9743 1.0432 80.4350 75.1210 0.9743 1.0432 TS240 14
15 TS104 80.4350 73.1880 0.9743 0.9307 80.4350 73.1880 0.9743 0.9307 TS104 15
16 TS275 80.4350 71.0140 0.9743 0.8041 80.4350 73.0680 0.9743 0.9237 TS275 16
17 TS218 79.7100 75.6040 0.9315 1.0713 79.7100 75.6040 0.9315 1.0713 TS218 17
18 TS207 79.7100 75.3620 0.9315 1.0572 79.7100 75.3620 0.9315 1.0572 TS207 18
19 TS253 79.7100 75.1210 0.9315 1.0432 83.3330 82.1260 1.1452 1.4510 TS253 19
20 TS214 79.7100 71.4980 0.9315 0.8323 79.7100 71.4980 0.9315 0.8323 TS214 20
21 TS127 79.7100 68.8410 0.9315 0.6776 80.0720 74.0340 0.9529 0.9799 TS127 21
22 TS419 78.9860 76.5700 0.8888 1.1275 78.9860 76.5700 0.8888 1.1275 TS419 22
23 TS302 78.9860 73.6710 0.8888 0.9588 78.9860 73.6710 0.8888 0.9588 TS302 23
24 TS142 78.9860 73.6710 0.8888 0.9588 78.9860 73.6710 0.8888 0.9588 TS142 24
25 TS457 78.6230 74.2750 0.8674 0.9939 78.6230 74.2750 0.8674 0.9939 TS457 25
26 TS103 77.8990 73.5510 0.8247 0.9518 77.8990 73.5510 0.8247 0.9518 TS103 26
27 TS361 77.5360 73.1880 0.8033 0.9307 82.2460 75.7250 1.0811 1.0783 TS361 27
28 TS429 77.5360 70.7730 0.8033 0.7901 79.3480 77.5360 0.9101 1.1838 TS429 28
29 TS060 77.5360 67.1500 0.8033 0.5792 92.3910 91.6670 1.6796 2.0064 TS060 29
30 TS470 77.1740 72.8260 0.7819 0.9096 83.3330 82.1260 1.1452 1.4510 TS470 30
31 TS449 77.1740 72.8260 0.7819 0.9096 77.1740 72.8260 0.7819 0.9096 TS449 31
32 TS453 77.1740 72.8260 0.7819 0.9096 77.1740 72.8260 0.7819 0.9096 TS453 32
33 TS346 77.1740 72.8260 0.7819 0.9096 77.1740 72.8260 0.7819 0.9096 TS346 33
34 TS102 76.8120 67.1500 0.7605 0.5792 76.8120 68.5990 0.7605 0.6635 TS102 34
35 TS452 76.4490 74.0340 0.7391 0.9799 76.4490 74.0340 0.7391 0.9799 TS452 35
36 TS213 76.0870 70.0480 0.7178 0.7479 76.0870 70.0480 0.7178 0.7479 TS213 36
37 TS119 76.0870 69.3240 0.7178 0.7057 76.0870 69.3240 0.7178 0.7057 TS119 37
38 TS407 76.0870 67.3910 0.7178 0.5932 78.2610 72.7050 0.8460 0.9025 TS407 38
39 TS002 75.7250 73.0680 0.6964 0.9237 75.7250 73.0680 0.6964 0.9237 TS002 39
40 TS129 75.3620 70.5310 0.6750 0.7760 75.3620 70.5310 0.6750 0.7760 TS129 40
41 TS307 75.3620 70.2900 0.6750 0.7620 75.3620 74.1550 0.6750 0.9869 TS307 41
42 TS208 75.0000 62.1980 0.6536 0.2909 75.0000 65.8210 0.6536 0.5018 TS208 42
43 TS236 74.2750 57.6090 0.6109 0.0238 74.2750 57.6090 0.6109 0.0238 TS236 43
44 TS114 74.2750 57.1260 0.6109 -0.0044 74.2750 58.0920 0.6109 0.0519 TS114 44
45 TS345 73.9130 68.3570 0.5895 0.6494 77.5360 73.4300 0.8033 0.9447 TS345 45
46 TS220 73.5510 68.2370 0.5682 0.6424 78.9860 73.6710 0.8888 0.9588 TS220 46
47 TS447 73.5510 68.2370 0.5682 0.6424 78.9860 73.6710 0.8888 0.9588 TS447 47
48 TS273 73.1880 57.2460 0.5468 0.0026 73.1880 67.3910 0.5468 0.5932 TS273 48
49 TS173 73.1880 56.7630 0.5468 -0.0255 73.1880 65.9420 0.5468 0.5088 TS173 49
50 TS391 71.7390 64.2510 0.4613 0.4104 71.7390 64.2510 0.4613 0.4104 TS391 50
51 TS296 71.3770 68.4780 0.4399 0.6565 73.1880 68.4780 0.5468 0.6565 TS296 51
52 AL396 71.3770 53.9860 0.4399 -0.1872 71.3770 58.3330 0.4399 0.0659 AL396 52
53 TS174 71.0140 57.4880 0.4185 0.0167 71.0140 57.4880 0.4185 0.0167 TS174 53
54 TS215 70.6520 67.0290 0.3972 0.5721 70.6520 67.0290 0.3972 0.5721 TS215 54
55 TS080 70.6520 67.0290 0.3972 0.5721 75.7250 73.0680 0.6964 0.9237 TS080 55
56 TS056 70.6520 66.7870 0.3972 0.5580 77.5360 75.1210 0.8033 1.0432 TS056 56
57 AL285 68.8410 67.3910 0.2903 0.5932 68.8410 67.3910 0.2903 0.5932 AL285 57
58 TS314 67.7540 63.4060 0.2262 0.3612 67.7540 63.4060 0.2262 0.3612 TS314 58
59 TS319 67.7540 62.9230 0.2262 0.3331 67.7540 62.9230 0.2262 0.3331 TS319 59
60 TS166 67.7540 57.8500 0.2262 0.0378 74.2750 70.4110 0.6109 0.7690 TS166 60
61 TS018 67.0290 63.1640 0.1834 0.3471 73.5510 70.6520 0.5682 0.7830 TS018 61
62 TS409 66.6670 47.3430 0.1621 -0.5739 75.7250 72.2220 0.6964 0.8744 TS409 62
63 TS476 66.3040 62.4400 0.1407 0.3050 66.3040 62.4400 0.1407 0.3050 TS476 63
64 TS244 66.3040 59.7830 0.1407 0.1503 74.2750 72.5850 0.6109 0.8956 TS244 64
65 TS366 66.3040 48.1880 0.1407 -0.5247 73.1880 66.9080 0.5468 0.5651 TS366 65
66 TS063 66.3040 48.1880 0.1407 -0.5247 73.1880 66.9080 0.5468 0.5651 TS063 66
67 TS165 64.8550 61.4730 0.0552 0.2487 75.7250 68.9610 0.6964 0.6846 TS165 67
68 TS026 64.8550 59.7830 0.0552 0.1503 64.8550 59.7830 0.0552 0.1503 TS026 68
69 TS435 64.8550 49.8790 0.0552 -0.4262 75.3620 72.4640 0.6750 0.8885 TS435 69
70 TS420 63.7680 63.5270 -0.0090 0.3683 63.7680 63.5270 -0.0090 0.3683 TS420 70
71 TS028 63.7680 63.2850 -0.0090 0.3542 67.3910 65.2170 0.2048 0.4666 TS028 71
72 TS171 59.7830 53.2610 -0.2440 -0.2294 59.7830 53.2610 -0.2440 -0.2294 TS171 72
73 TS001 59.4200 46.8600 -0.2654 -0.6020 73.1880 57.2460 0.5468 0.0026 TS001 73
74 TS245 58.3330 52.5360 -0.3296 -0.2716 58.3330 52.5360 -0.3296 -0.2716 TS245 74
75 TS248 55.4350 44.3240 -0.5005 -0.7496 55.4350 44.3240 -0.5005 -0.7496 TS248 75
76 TS481 52.1740 47.8260 -0.6929 -0.5458 52.1740 47.8260 -0.6929 -0.5458 TS481 76
77 TS055 47.8260 43.3570 -0.9494 -0.8059 71.7390 58.9370 0.4613 0.1011 TS055 77
78 TS291 45.2900 40.2170 -1.0990 -0.9887 62.6810 52.2950 -0.0731 -0.2856 TS291 78
79 TS250 44.9280 38.1640 -1.1204 -1.1082 44.9280 39.1300 -1.1204 -1.0520 TS250 79
80 TS047 40.2170 35.6280 -1.3983 -1.2558 40.2170 35.6280 -1.3983 -1.2558 TS047 80
81 TS304 39.1300 30.6760 -1.4624 -1.5441 48.5510 39.3720 -0.9066 -1.0379 TS304 81
82 TS229 36.5940 32.7290 -1.6120 -1.4246 36.9570 34.3000 -1.5906 -1.3331 TS229 82
83 TS140 36.2320 30.4350 -1.6334 -1.5581 36.2320 31.4010 -1.6334 -1.5019 TS140 83
84 TS355 35.8700 30.5560 -1.6547 -1.5511 43.4780 37.4400 -1.2059 -1.1504 TS355 84
85 TS328 35.8700 28.8650 -1.6547 -1.6495 35.8700 28.8650 -1.6547 -1.6495 TS328 85
86 TS039 35.1450 33.6960 -1.6975 -1.3683 44.2030 42.5120 -1.1631 -0.8551 TS039 86
87 TS086 35.1450 33.6960 -1.6975 -1.3683 36.2320 33.6960 -1.6334 -1.3683 TS086 87
88 TS322 34.7830 32.4880 -1.7188 -1.4386 34.7830 32.4880 -1.7188 -1.4386 TS322 88
89 TS350 34.4200 28.1400 -1.7402 -1.6917 58.3330 47.7050 -0.3296 -0.5528 TS350 89
90 TS257 34.4200 28.1400 -1.7402 -1.6917 58.3330 47.7050 -0.3296 -0.5528 TS257 90
91 TS014 32.6090 28.0190 -1.8471 -1.6988 34.4200 31.8840 -1.7402 -1.4738 TS014 91
92 TS269 32.6090 24.1550 -1.8471 -1.9237 36.2320 33.2130 -1.6334 -1.3964 TS269 92
93 TS152 32.6090 24.1550 -1.8471 -1.9237 36.2320 33.2130 -1.6334 -1.3964 TS152 93
94 TS331 30.4350 26.3290 -1.9753 -1.7972 37.3190 32.9710 -1.5692 -1.4105 TS331 94
95 TS444 30.4350 21.2560 -1.9753 -2.0925 35.1450 32.3670 -1.6975 -1.4457 TS444 95
96 RANDOM 28.81 24.01 -2.0712 -1.9322 28.81 24.01 -2.0712 -1.9322 RANDOM 96
97 TS264 28.2610 26.4490 -2.1036 -1.7902 36.9570 34.6620 -1.5906 -1.3121 TS264 97
98 TS433 28.2610 21.2560 -2.1036 -2.0925 37.3190 32.9710 -1.5692 -1.4105 TS433 98
99 TS471 26.8120 20.7730 -2.1891 -2.1206 26.8120 20.7730 -2.1891 -2.1206 TS471 99
100 TS009             -2.0712 -1.9322             -2.0712 -1.9322 TS009 100
101 TS016             -2.0712 -1.9322             -2.0712 -1.9322 TS016 101
102 TS020             -2.0712 -1.9322             -2.0712 -1.9322 TS020 102
103 TS029             -2.0712 -1.9322             -2.0712 -1.9322 TS029 103
104 TS033             -2.0712 -1.9322             -2.0712 -1.9322 TS033 104
105 TS035             -2.0712 -1.9322             -2.0712 -1.9322 TS035 105
106 TS042             -2.0712 -1.9322             -2.0712 -1.9322 TS042 106
107 TS044             -2.0712 -1.9322             -2.0712 -1.9322 TS044 107
108 TS045             -2.0712 -1.9322             -2.0712 -1.9322 TS045 108
109 TS061             -2.0712 -1.9322             -2.0712 -1.9322 TS061 109
110 TS074             -2.0712 -1.9322             -2.0712 -1.9322 TS074 110
111 TS075             -2.0712 -1.9322             -2.0712 -1.9322 TS075 111
112 TS083             -2.0712 -1.9322             -2.0712 -1.9322 TS083 112
113 TS084             -2.0712 -1.9322             -2.0712 -1.9322 TS084 113
114 TS096             -2.0712 -1.9322             -2.0712 -1.9322 TS096 114
115 TS105             -2.0712 -1.9322             -2.0712 -1.9322 TS105 115
116 TS110             -2.0712 -1.9322             -2.0712 -1.9322 TS110 116
117 TS147             -2.0712 -1.9322             -2.0712 -1.9322 TS147 117
118 TS149             -2.0712 -1.9322             -2.0712 -1.9322 TS149 118
119 TS150             -2.0712 -1.9322             -2.0712 -1.9322 TS150 119
120 TS153             -2.0712 -1.9322             -2.0712 -1.9322 TS153 120
121 TS154             -2.0712 -1.9322             -2.0712 -1.9322 TS154 121
122 TS160             -2.0712 -1.9322             -2.0712 -1.9322 TS160 122
123 TS170             -2.0712 -1.9322             -2.0712 -1.9322 TS170 123
124 TS172             -2.0712 -1.9322             -2.0712 -1.9322 TS172 124
125 TS178             -2.0712 -1.9322             -2.0712 -1.9322 TS178 125
126 TS180             -2.0712 -1.9322             -2.0712 -1.9322 TS180 126
127 TS182             -2.0712 -1.9322             -2.0712 -1.9322 TS182 127
128 TS184             -2.0712 -1.9322             -2.0712 -1.9322 TS184 128
129 TS186             -2.0712 -1.9322             -2.0712 -1.9322 TS186 129
130 TS189             -2.0712 -1.9322             -2.0712 -1.9322 TS189 130
131 TS192             -2.0712 -1.9322             -2.0712 -1.9322 TS192 131
132 TS199             -2.0712 -1.9322             -2.0712 -1.9322 TS199 132
133 TS200             -2.0712 -1.9322             -2.0712 -1.9322 TS200 133
134 TS206             -2.0712 -1.9322             -2.0712 -1.9322 TS206 134
135 TS228             -2.0712 -1.9322             -2.0712 -1.9322 TS228 135
136 TS242             -2.0712 -1.9322             -2.0712 -1.9322 TS242 136
137 TS254             -2.0712 -1.9322             -2.0712 -1.9322 TS254 137
138 TS261             -2.0712 -1.9322             -2.0712 -1.9322 TS261 138
139 TS263             -2.0712 -1.9322             -2.0712 -1.9322 TS263 139
140 TS278             -2.0712 -1.9322             -2.0712 -1.9322 TS278 140
141 TS279             -2.0712 -1.9322             -2.0712 -1.9322 TS279 141
142 TS282             -2.0712 -1.9322             -2.0712 -1.9322 TS282 142
143 TS289             -2.0712 -1.9322             -1.2700 -1.1293 TS289 143
144 TS295             -2.0712 -1.9322             -2.0712 -1.9322 TS295 144
145 TS297             -2.0712 -1.9322             -2.0712 -1.9322 TS297 145
146 TS299             -2.0712 -1.9322             -2.0712 -1.9322 TS299 146
147 TS300             -2.0712 -1.9322             -2.0712 -1.9322 TS300 147
148 TS301             -2.0712 -1.9322             -2.0712 -1.9322 TS301 148
149 TS311             -2.0712 -1.9322             -2.0712 -1.9322 TS311 149
150 TS316             -2.0712 -1.9322             -2.0712 -1.9322 TS316 150
151 TS324             -2.0712 -1.9322             -2.0712 -1.9322 TS324 151
152 TS330             -2.0712 -1.9322             -2.0712 -1.9322 TS330 152
153 TS333             -2.0712 -1.9322             -2.0712 -1.9322 TS333 153
154 TS336             -2.0712 -1.9322             -2.0712 -1.9322 TS336 154
155 TS347             -2.0712 -1.9322             -2.0712 -1.9322 TS347 155
156 TS353             -2.0712 -1.9322             -2.0712 -1.9322 TS353 156
157 TS358             -2.0712 -1.9322             -2.0712 -1.9322 TS358 157
158 TS360             -2.0712 -1.9322             -2.0712 -1.9322 TS360 158
159 TS362             -2.0712 -1.9322             -2.0712 -1.9322 TS362 159
160 TS365             -2.0712 -1.9322             -2.0712 -1.9322 TS365 160
161 TS373             -2.0712 -1.9322             -2.0712 -1.9322 TS373 161
162 TS382             -2.0712 -1.9322             -2.0712 -1.9322 TS382 162
163 TS386             -2.0712 -1.9322             -2.0712 -1.9322 TS386 163
164 TS399             -2.0712 -1.9322             -2.0712 -1.9322 TS399 164
165 TS400             -2.0712 -1.9322             -2.0712 -1.9322 TS400 165
166 TS402             -2.0712 -1.9322             -2.0712 -1.9322 TS402 166
167 TS403             -2.0712 -1.9322             -2.0712 -1.9322 TS403 167
168 TS408             -2.0712 -1.9322             -2.0712 -1.9322 TS408 168
169 TS418             -2.0712 -1.9322             -2.0712 -1.9322 TS418 169
170 TS423             -2.0712 -1.9322             -2.0712 -1.9322 TS423 170
171 TS424             -2.0712 -1.9322             -2.0712 -1.9322 TS424 171
172 TS436             -2.0712 -1.9322             -2.0712 -1.9322 TS436 172
173 TS439             -2.0712 -1.9322             -2.0712 -1.9322 TS439 173
174 TS450             -2.0712 -1.9322             -2.0712 -1.9322 TS450 174
175 TS458             -2.0712 -1.9322             -2.0712 -1.9322 TS458 175
176 TS461             -2.0712 -1.9322             -2.0712 -1.9322 TS461 176
177 TS477             -2.0712 -1.9322             -2.0712 -1.9322 TS477 177
178 TS484             -2.0712 -1.9322             -2.0712 -1.9322 TS484 178