T0538

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0538

NsR143 from unknown species

Target type: Server only

Target sequence:

>T0538 NsR143, unknown species, 54 residues
MNLRWTSEAKTKLKNIPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEFGQ

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l09

Jmol of T0538 structure : 2l09

PyMOL of T0538

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0538A1-621-54

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

It is a three-helical protein forming a small bundle.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2kru_A | PyMOL of 2kru A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

PCP_red: Proto-chlorophyllide reductase 57 kD subunit (PF08369).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0538 T0538 T0538 T0538
First score First Z-score Best score Best Z-score
1 TS173 93.5190 92.9010 1.3204 1.8302 94.4440 93.8270 1.3661 1.8805 TS173 1
2 TS395 92.1300 87.1910 1.2517 1.5198 92.1300 90.7410 1.2517 1.7128 TS395 2
3 TS170 91.6670 91.0490 1.2288 1.7295 93.0560 91.8210 1.2975 1.7715 TS170 3
4 TS028 85.6480 75.4630 0.9314 0.8822 85.6480 75.4630 0.9314 0.8822 TS028 4
5 TS470 85.1850 78.0860 0.9086 1.0248 85.1850 78.0860 0.9086 1.0248 TS470 5
6 TS302 85.1850 77.1600 0.9086 0.9745 85.1850 77.1600 0.9086 0.9745 TS302 6
7 TS142 85.1850 77.1600 0.9086 0.9745 85.1850 77.1600 0.9086 0.9745 TS142 7
8 TS220 85.1850 77.1600 0.9086 0.9745 85.1850 77.1600 0.9086 0.9745 TS220 8
9 TS447 85.1850 77.1600 0.9086 0.9745 85.1850 77.1600 0.9086 0.9745 TS447 9
10 TS361 85.1850 75.6170 0.9086 0.8906 85.1850 75.6170 0.9086 0.8906 TS361 10
11 TS114 85.1850 70.6790 0.9086 0.6221 86.1110 72.2220 0.9543 0.7060 TS114 11
12 TS428 84.7220 76.6980 0.8857 0.9493 92.5930 88.8890 1.2746 1.6121 TS428 12
13 TS119 84.7220 76.3890 0.8857 0.9325 84.7220 76.3890 0.8857 0.9325 TS119 13
14 TS094 84.7220 75.1540 0.8857 0.8654 84.7220 76.3890 0.8857 0.9325 TS094 14
15 TS457 84.2590 78.3950 0.8628 1.0416 84.2590 78.3950 0.8628 1.0416 TS457 15
16 TS380 84.2590 77.7780 0.8628 1.0081 93.0560 91.8210 1.2975 1.7715 TS380 16
17 TS080 84.2590 75.3090 0.8628 0.8738 84.2590 75.3090 0.8628 0.8738 TS080 17
18 TS102 84.2590 75.0000 0.8628 0.8570 84.7220 75.9260 0.8857 0.9074 TS102 18
19 TS166 84.2590 73.7650 0.8628 0.7899 84.2590 77.4690 0.8628 0.9913 TS166 19
20 TS077 84.2590 72.5310 0.8628 0.7228 84.2590 72.5310 0.8628 0.7228 TS077 20
21 TS286 84.2590 72.5310 0.8628 0.7228 84.2590 72.5310 0.8628 0.7228 TS286 21
22 TS366 84.2590 71.9140 0.8628 0.6893 84.2590 71.9140 0.8628 0.6893 TS366 22
23 TS063 84.2590 71.9140 0.8628 0.6893 84.2590 71.9140 0.8628 0.6893 TS063 23
24 TS104 84.2590 70.0620 0.8628 0.5886 84.2590 70.0620 0.8628 0.5886 TS104 24
25 TS490 84.2590 66.6670 0.8628 0.4040 84.2590 73.7650 0.8628 0.7899 TS490 25
26 TS345 83.7960 73.9200 0.8399 0.7983 85.1850 77.1600 0.9086 0.9745 TS345 26
27 TS407 83.7960 73.6110 0.8399 0.7815 84.7220 76.3890 0.8857 0.9325 TS407 27
28 TS276 83.7960 73.3020 0.8399 0.7647 83.7960 73.3020 0.8399 0.7647 TS276 28
29 TS429 83.7960 72.0680 0.8399 0.6976 83.7960 74.6910 0.8399 0.8402 TS429 29
30 TS208 83.7960 72.0680 0.8399 0.6976 84.2590 74.5370 0.8628 0.8319 TS208 30
31 TS113 83.7960 71.7590 0.8399 0.6808 84.2590 74.2280 0.8628 0.8151 TS113 31
32 TS215 83.3330 75.0000 0.8170 0.8570 84.2590 75.3090 0.8628 0.8738 TS215 32
33 TS002 83.3330 75.0000 0.8170 0.8570 83.3330 75.0000 0.8170 0.8570 TS002 33
34 TS026 83.3330 72.2220 0.8170 0.7060 83.3330 72.2220 0.8170 0.7060 TS026 34
35 TS275 83.3330 72.2220 0.8170 0.7060 83.3330 73.6110 0.8170 0.7815 TS275 35
36 TS056 83.3330 71.6050 0.8170 0.6725 83.3330 72.8400 0.8170 0.7396 TS056 36
37 TS244 82.8700 76.0800 0.7942 0.9157 82.8700 76.0800 0.7942 0.9157 TS244 37
38 TS481 82.8700 74.8460 0.7942 0.8487 83.7960 74.8460 0.8399 0.8487 TS481 38
39 TS245 82.8700 74.8460 0.7942 0.8487 82.8700 74.8460 0.7942 0.8487 TS245 39
40 TS452 82.8700 73.9200 0.7942 0.7983 83.3330 73.9200 0.8170 0.7983 TS452 40
41 TS174 82.8700 73.3020 0.7942 0.7647 82.8700 73.3020 0.7942 0.7647 TS174 41
42 TS165 82.8700 70.8330 0.7942 0.6305 82.8700 73.6110 0.7942 0.7815 TS165 42
43 TS127 82.8700 68.9810 0.7942 0.5298 82.8700 72.2220 0.7942 0.7060 TS127 43
44 TS253 82.4070 73.4570 0.7713 0.7732 83.3330 73.4570 0.8170 0.7732 TS253 44
45 TS307 82.4070 71.6050 0.7713 0.6725 82.8700 74.3830 0.7942 0.8235 TS307 45
46 TS047 82.4070 71.2960 0.7713 0.6557 82.4070 71.2960 0.7713 0.6557 TS047 46
47 TS419 82.4070 71.2960 0.7713 0.6557 82.4070 71.2960 0.7713 0.6557 TS419 47
48 TS103 81.9440 75.7720 0.7484 0.8990 81.9440 75.7720 0.7484 0.8990 TS103 48
49 TS129 81.9440 73.9200 0.7484 0.7983 81.9440 73.9200 0.7484 0.7983 TS129 49
50 AL396 81.9440 71.7590 0.7484 0.6808 81.9440 71.7590 0.7484 0.6808 AL396 50
51 TS409 81.9440 70.5250 0.7484 0.6138 81.9440 70.5250 0.7484 0.6138 TS409 51
52 TS449 81.9440 70.5250 0.7484 0.6138 81.9440 70.5250 0.7484 0.6138 TS449 52
53 TS453 81.9440 70.5250 0.7484 0.6138 81.9440 70.5250 0.7484 0.6138 TS453 53
54 TS346 81.9440 70.5250 0.7484 0.6138 81.9440 70.5250 0.7484 0.6138 TS346 54
55 TS088 81.9440 70.2160 0.7484 0.5970 83.7960 76.3890 0.8399 0.9325 TS088 55
56 TS207 81.4810 74.3830 0.7255 0.8235 82.8700 75.4630 0.7942 0.8822 TS207 56
57 TS117 81.4810 74.0740 0.7255 0.8067 81.4810 74.8460 0.7255 0.8487 TS117 57
58 TS476 81.4810 72.8400 0.7255 0.7396 81.4810 72.8400 0.7255 0.7396 TS476 58
59 TS420 81.4810 72.8400 0.7255 0.7396 81.4810 72.8400 0.7255 0.7396 TS420 59
60 TS171 81.4810 72.8400 0.7255 0.7396 81.4810 72.8400 0.7255 0.7396 TS171 60
61 TS471 81.4810 72.8400 0.7255 0.7396 81.4810 72.8400 0.7255 0.7396 TS471 61
62 TS321 81.4810 70.9880 0.7255 0.6389 81.4810 70.9880 0.7255 0.6389 TS321 62
63 TS273 81.0190 70.5250 0.7027 0.6138 83.7960 74.8460 0.8399 0.8487 TS273 63
64 TS001 81.0190 70.5250 0.7027 0.6138 83.7960 74.8460 0.8399 0.8487 TS001 64
65 TS296 81.0190 70.5250 0.7027 0.6138 83.7960 74.8460 0.8399 0.8487 TS296 65
66 AL285 80.5560 72.2220 0.6798 0.7060 80.5560 72.2220 0.6798 0.7060 AL285 66
67 TS213 80.0930 73.3020 0.6569 0.7647 80.0930 73.3020 0.6569 0.7647 TS213 67
68 TS214 80.0930 70.8330 0.6569 0.6305 82.4070 76.5430 0.7713 0.9409 TS214 68
69 TS291 78.7040 65.4320 0.5883 0.3369 83.7960 72.9940 0.8399 0.7480 TS291 69
70 TS037 77.7780 65.4320 0.5426 0.3369 84.2590 76.5430 0.8628 0.9409 TS037 70
71 TS264 77.3150 69.5990 0.5197 0.5634 77.3150 69.5990 0.5197 0.5634 TS264 71
72 TS319 76.3890 71.1420 0.4739 0.6473 83.7960 74.8460 0.8399 0.8487 TS319 72
73 TS236 73.6110 56.9440 0.3367 -0.1246 78.2410 61.5740 0.5654 0.1271 TS236 73
74 TS218 72.6850 69.2900 0.2909 0.5466 72.6850 69.2900 0.2909 0.5466 TS218 74
75 TS391 71.7590 67.1300 0.2451 0.4292 71.7590 67.1300 0.2451 0.4292 TS391 75
76 TS257 64.8150 52.4690 -0.0980 -0.3678 64.8150 53.5490 -0.0980 -0.3091 TS257 76
77 TS018 57.8700 47.9940 -0.4411 -0.6111 57.8700 47.9940 -0.4411 -0.6111 TS018 77
78 TS055 56.4810 51.2350 -0.5098 -0.4349 69.9070 62.1910 0.1536 0.1607 TS055 78
79 TS014 50.4630 45.0620 -0.8071 -0.7705 55.0930 47.0680 -0.5784 -0.6614 TS014 79
80 TS435 48.1480 43.2100 -0.9215 -0.8712 48.1480 43.2100 -0.9215 -0.8712 TS435 80
81 TS322 43.9810 37.1910 -1.1274 -1.1984 43.9810 41.6670 -1.1274 -0.9551 TS322 81
82 TS289 42.5930 39.1980 -1.1960 -1.0893 42.5930 39.1980 -1.1960 -1.0893 TS289 82
83 TS039 42.1300 40.5860 -1.2189 -1.0138 50.4630 44.9070 -0.8071 -0.7789 TS039 83
84 TS086 42.1300 40.5860 -1.2189 -1.0138 50.4630 44.9070 -0.8071 -0.7789 TS086 84
85 TS229 41.6670 37.9630 -1.2418 -1.1564 42.1300 39.6600 -1.2189 -1.0642 TS229 85
86 TS444 41.2040 36.7280 -1.2647 -1.2236 41.2040 36.7280 -1.2647 -1.2236 TS444 86
87 TS433 40.7410 39.5060 -1.2875 -1.0725 50.0000 45.6790 -0.8300 -0.7370 TS433 87
88 TS331 40.7410 39.5060 -1.2875 -1.0725 51.3890 48.9200 -0.7614 -0.5608 TS331 88
89 TS269 40.2780 38.1170 -1.3104 -1.1481 42.1300 41.2040 -1.2189 -0.9802 TS269 89
90 TS152 40.2780 38.1170 -1.3104 -1.1481 42.1300 41.2040 -1.2189 -0.9802 TS152 90
91 TS250 39.3520 37.0370 -1.3562 -1.2068 42.1300 39.8150 -1.2189 -1.0557 TS250 91
92 TS436 38.8890 32.5620 -1.3790 -1.4500 38.8890 32.5620 -1.3790 -1.4500 TS436 92
93 RANDOM 36.44 29.62 -1.5001 -1.6100 36.44 29.62 -1.5001 -1.6100 RANDOM 93
94 TS304 36.1110 33.4880 -1.5163 -1.3997 39.3520 34.1050 -1.3562 -1.3662 TS304 94
95 TS140 35.6480 33.1790 -1.5392 -1.4165 43.9810 41.2040 -1.1274 -0.9802 TS140 95
96 TS228 34.7220 33.1790 -1.5849 -1.4165 85.1850 78.0860 0.9086 1.0248 TS228 96
97 TS350 33.3330 32.0990 -1.6536 -1.4752 34.7220 32.8700 -1.5849 -1.4333 TS350 97
98 TS248 31.9440 27.6230 -1.7222 -1.7185 31.9440 28.2410 -1.7222 -1.6849 TS248 98
99 TS328 30.5560 28.3950 -1.7908 -1.6766 30.5560 28.3950 -1.7908 -1.6766 TS328 99
100 TS314 22.6850 20.5250 -2.1797 -2.1044 82.8700 71.7590 0.7942 0.6808 TS314 100
101 TS009             -1.5001 -1.6100             -1.5001 -1.6100 TS009 101
102 TS016             -1.5001 -1.6100             -1.5001 -1.6100 TS016 102
103 TS020             -1.5001 -1.6100             -1.5001 -1.6100 TS020 103
104 TS029             -1.5001 -1.6100             -1.5001 -1.6100 TS029 104
105 TS033             -1.5001 -1.6100             -1.5001 -1.6100 TS033 105
106 TS035             -1.5001 -1.6100             -1.5001 -1.6100 TS035 106
107 TS042             -1.5001 -1.6100             -1.5001 -1.6100 TS042 107
108 TS044             -1.5001 -1.6100             -1.5001 -1.6100 TS044 108
109 TS045             -1.5001 -1.6100             -1.5001 -1.6100 TS045 109
110 TS060             -1.5001 -1.6100             -1.5001 -1.6100 TS060 110
111 TS061             -1.5001 -1.6100             -1.5001 -1.6100 TS061 111
112 TS074             -1.5001 -1.6100             -1.5001 -1.6100 TS074 112
113 TS075             -1.5001 -1.6100             -1.5001 -1.6100 TS075 113
114 TS083             -1.5001 -1.6100             -1.5001 -1.6100 TS083 114
115 TS084             -1.5001 -1.6100             -1.5001 -1.6100 TS084 115
116 TS096             -1.5001 -1.6100             -1.5001 -1.6100 TS096 116
117 TS105             -1.5001 -1.6100             -1.5001 -1.6100 TS105 117
118 TS110             -1.5001 -1.6100             -1.5001 -1.6100 TS110 118
119 TS147             -1.5001 -1.6100             -1.5001 -1.6100 TS147 119
120 TS149             -1.5001 -1.6100             -1.5001 -1.6100 TS149 120
121 TS150             -1.5001 -1.6100             -1.5001 -1.6100 TS150 121
122 TS153             -1.5001 -1.6100             -1.5001 -1.6100 TS153 122
123 TS154             -1.5001 -1.6100             -1.5001 -1.6100 TS154 123
124 TS160             -1.5001 -1.6100             -1.5001 -1.6100 TS160 124
125 TS172             -1.5001 -1.6100             -1.5001 -1.6100 TS172 125
126 TS178             -1.5001 -1.6100             -1.5001 -1.6100 TS178 126
127 TS180             -1.5001 -1.6100             -1.5001 -1.6100 TS180 127
128 TS182             -1.5001 -1.6100             -1.5001 -1.6100 TS182 128
129 TS184             -1.5001 -1.6100             -1.5001 -1.6100 TS184 129
130 TS186             -1.5001 -1.6100             -1.5001 -1.6100 TS186 130
131 TS189             -1.5001 -1.6100             -1.5001 -1.6100 TS189 131
132 TS192             -1.5001 -1.6100             -1.5001 -1.6100 TS192 132
133 TS199             -1.5001 -1.6100             -1.5001 -1.6100 TS199 133
134 TS200             -1.5001 -1.6100             -1.5001 -1.6100 TS200 134
135 TS206             -1.5001 -1.6100             -1.5001 -1.6100 TS206 135
136 TS240             -1.5001 -1.6100             -1.5001 -1.6100 TS240 136
137 TS242             -1.5001 -1.6100             -1.5001 -1.6100 TS242 137
138 TS254             -1.5001 -1.6100             -1.5001 -1.6100 TS254 138
139 TS261             -1.5001 -1.6100             -1.5001 -1.6100 TS261 139
140 TS263             -1.5001 -1.6100             -1.5001 -1.6100 TS263 140
141 TS278             -1.5001 -1.6100             -1.5001 -1.6100 TS278 141
142 TS279             -1.5001 -1.6100             -1.5001 -1.6100 TS279 142
143 TS282             -1.5001 -1.6100             -1.5001 -1.6100 TS282 143
144 TS295             -1.5001 -1.6100             -1.5001 -1.6100 TS295 144
145 TS297             -1.5001 -1.6100             -1.5001 -1.6100 TS297 145
146 TS299             -1.5001 -1.6100             -1.5001 -1.6100 TS299 146
147 TS300             -1.5001 -1.6100             -1.5001 -1.6100 TS300 147
148 TS301             -1.5001 -1.6100             -1.5001 -1.6100 TS301 148
149 TS311             -1.5001 -1.6100             -1.5001 -1.6100 TS311 149
150 TS316             -1.5001 -1.6100             -1.5001 -1.6100 TS316 150
151 TS324             -1.5001 -1.6100             -1.5001 -1.6100 TS324 151
152 TS330             -1.5001 -1.6100             -1.5001 -1.6100 TS330 152
153 TS333             -1.5001 -1.6100             -1.5001 -1.6100 TS333 153
154 TS336             -1.5001 -1.6100             -1.5001 -1.6100 TS336 154
155 TS347             -1.5001 -1.6100             -1.5001 -1.6100 TS347 155
156 TS353             -1.5001 -1.6100             -1.5001 -1.6100 TS353 156
157 TS355             -1.5001 -1.6100             -1.5001 -1.6100 TS355 157
158 TS358             -1.5001 -1.6100             -1.5001 -1.6100 TS358 158
159 TS360             -1.5001 -1.6100             -1.5001 -1.6100 TS360 159
160 TS362             -1.5001 -1.6100             -1.5001 -1.6100 TS362 160
161 TS365             -1.5001 -1.6100             -1.5001 -1.6100 TS365 161
162 TS373             -1.5001 -1.6100             -1.5001 -1.6100 TS373 162
163 TS382             -1.5001 -1.6100             -1.5001 -1.6100 TS382 163
164 TS386             -1.5001 -1.6100             -1.5001 -1.6100 TS386 164
165 TS399             -1.5001 -1.6100             -1.5001 -1.6100 TS399 165
166 TS400             -1.5001 -1.6100             -1.5001 -1.6100 TS400 166
167 TS402             -1.5001 -1.6100             -1.5001 -1.6100 TS402 167
168 TS403             -1.5001 -1.6100             -1.5001 -1.6100 TS403 168
169 TS408             -1.5001 -1.6100             -1.5001 -1.6100 TS408 169
170 TS418             -1.5001 -1.6100             -1.5001 -1.6100 TS418 170
171 TS423             -1.5001 -1.6100             -1.5001 -1.6100 TS423 171
172 TS424             -1.5001 -1.6100             -1.5001 -1.6100 TS424 172
173 TS439             -1.5001 -1.6100             -1.5001 -1.6100 TS439 173
174 TS450             -1.5001 -1.6100             -1.5001 -1.6100 TS450 174
175 TS458             -1.5001 -1.6100             -1.5001 -1.6100 TS458 175
176 TS461             -1.5001 -1.6100             -1.5001 -1.6100 TS461 176
177 TS477             -1.5001 -1.6100             -1.5001 -1.6100 TS477 177
178 TS484             -1.5001 -1.6100             -1.5001 -1.6100 TS484 178