T0580

Targets
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643      

T0580

lactose-specific IIB PTS system component from Streptococcus pneumoniae TIGR4

Target type: Human/Server

Target sequence:

>T0580 lactose-specific IIB PTS system component, Streptococcus pneumoniae TIGR4, 107 residues
SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nbm

Jmol of T0580 structure : 3nbm

PyMOL of T0580

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0580A454-5572-105

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

PTS system IIB component-like, Rossmann-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1e2b_A | PyMOL of 1e2b A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

PTS system, Lactose/Cellobiose specific IIB subunit (PF02302).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0580 T0580 T0580 T0580
First score First Z-score Best score Best Z-score
1 TS172 90.3850 88.7820 1.3020 1.5316 91.3460 88.7820 1.3693 1.5316 TS172 1
2 TS484 88.9420 81.2500 1.2011 1.0862 88.9420 81.2500 1.2011 1.0862 TS484 2
3 TS083 88.7020 87.4200 1.1843 1.4511 88.7020 87.4200 1.1843 1.4511 TS083 3
4 TS295 88.2210 86.2980 1.1507 1.3847 89.4230 88.1410 1.2348 1.4937 TS295 4
5 TS199 88.2210 83.2530 1.1507 1.2047 88.2210 83.2530 1.1507 1.2047 TS199 5
6 TS300 88.2210 82.9330 1.1507 1.1858 88.2210 82.9330 1.1507 1.1858 TS300 6
7 TS321 88.2210 82.9330 1.1507 1.1858 88.2210 82.9330 1.1507 1.1858 TS321 7
8 TS061 88.2210 82.9330 1.1507 1.1858 88.2210 82.9330 1.1507 1.1858 TS061 8
9 TS395 85.8170 83.5740 0.9825 1.2237 88.2210 87.2600 1.1507 1.4416 TS395 9
10 TS297 85.3370 79.8880 0.9489 1.0057 88.9420 85.7370 1.2011 1.3516 TS297 10
11 TS365 84.6150 79.9680 0.8984 1.0104 84.6150 79.9680 0.8984 1.0104 TS365 11
12 TS104 84.3750 77.0830 0.8817 0.8399 84.3750 77.0830 0.8817 0.8399 TS104 12
13 TS424 84.1350 80.6090 0.8649 1.0483 84.1350 80.6090 0.8649 1.0483 TS424 13
14 TS096 83.8940 80.8490 0.8480 1.0625 83.8940 80.8490 0.8480 1.0625 TS096 14
15 TS386 83.8940 79.4070 0.8480 0.9773 85.0960 80.2880 0.9321 1.0294 TS386 15
16 TS490 83.8940 72.5160 0.8480 0.5698 83.8940 79.8080 0.8480 1.0010 TS490 16
17 TS033 83.6540 75.8010 0.8312 0.7641 84.3750 77.4840 0.8817 0.8636 TS033 17
18 TS429 83.6540 74.8400 0.8312 0.7072 83.6540 78.6860 0.8312 0.9346 TS429 18
19 TS103 83.4130 73.7980 0.8144 0.6456 83.4130 76.7630 0.8144 0.8209 TS103 19
20 TS275 82.9330 79.2470 0.7808 0.9678 82.9330 79.2470 0.7808 0.9678 TS275 20
21 TS470 82.9330 79.2470 0.7808 0.9678 82.9330 79.2470 0.7808 0.9678 TS470 21
22 TS316 82.9330 78.7660 0.7808 0.9394 85.8170 82.4520 0.9825 1.1573 TS316 22
23 TS461 82.6920 79.4870 0.7639 0.9820 82.6920 79.4870 0.7639 0.9820 TS461 23
24 TS361 82.6920 78.5260 0.7639 0.9252 82.9330 78.5260 0.7808 0.9252 TS361 24
25 TS102 82.6920 70.1920 0.7639 0.4324 82.6920 71.3940 0.7639 0.5035 TS102 25
26 TS458 82.6920 70.1920 0.7639 0.4324 82.6920 74.6790 0.7639 0.6977 TS458 26
27 TS253 82.4520 78.2850 0.7471 0.9109 82.4520 78.2850 0.7471 0.9109 TS253 27
28 TS094 82.4520 77.8040 0.7471 0.8825 82.9330 79.2470 0.7808 0.9678 TS094 28
29 TS380 82.4520 73.3170 0.7471 0.6172 85.0960 82.2120 0.9321 1.1431 TS380 29
30 TS009 82.2120 76.4420 0.7304 0.8020 82.2120 76.4420 0.7304 0.8020 TS009 30
31 TS119 82.2120 75.8010 0.7304 0.7641 82.4520 77.8040 0.7471 0.8825 TS119 31
32 TS418 82.2120 72.7560 0.7304 0.5840 87.7400 85.1760 1.1170 1.3184 TS418 32
33 TS419 82.2120 72.5960 0.7304 0.5746 82.2120 72.5960 0.7304 0.5746 TS419 33
34 TS166 82.2120 72.5960 0.7304 0.5746 82.2120 72.5960 0.7304 0.5746 TS166 34
35 TS001 82.2120 72.5960 0.7304 0.5746 82.2120 77.0830 0.7304 0.8399 TS001 35
36 TS037 82.2120 72.3560 0.7304 0.5604 82.2120 74.8400 0.7304 0.7072 TS037 36
37 TS002 82.2120 71.0740 0.7304 0.4846 82.4520 78.6060 0.7471 0.9299 TS002 37
38 TS114 82.2120 69.2310 0.7304 0.3756 82.6920 78.5260 0.7639 0.9252 TS114 38
39 TS056 81.9710 77.4840 0.7135 0.8636 81.9710 77.4840 0.7135 0.8636 TS056 39
40 TS047 81.9710 76.2020 0.7135 0.7878 81.9710 76.2020 0.7135 0.7878 TS047 40
41 TS402 81.9710 75.5610 0.7135 0.7499 81.9710 75.8010 0.7135 0.7641 TS402 41
42 TS399 81.9710 75.0800 0.7135 0.7214 82.9330 79.2470 0.7808 0.9678 TS399 42
43 TS208 81.9710 75.0800 0.7135 0.7214 82.9330 79.2470 0.7808 0.9678 TS208 43
44 TS055 81.9710 73.7980 0.7135 0.6456 86.2980 80.6890 1.0162 1.0531 TS055 44
45 TS080 81.7310 77.4040 0.6967 0.8588 82.2120 77.4040 0.7304 0.8588 TS080 45
46 TS244 81.7310 76.4420 0.6967 0.8020 81.7310 76.4420 0.6967 0.8020 TS244 46
47 TS324 81.7310 75.8010 0.6967 0.7641 83.6540 76.9230 0.8312 0.8304 TS324 47
48 TS481 81.7310 71.8750 0.6967 0.5319 81.7310 76.3620 0.6967 0.7972 TS481 48
49 TS186 81.4900 76.3620 0.6799 0.7972 82.9330 78.4460 0.7808 0.9205 TS186 49
50 TS403 81.4900 74.7600 0.6799 0.7025 82.2120 77.7240 0.7304 0.8778 TS403 50
51 TS214 81.4900 74.5990 0.6799 0.6930 81.7310 78.5260 0.6967 0.9252 TS214 51
52 TS436 81.4900 68.6700 0.6799 0.3424 81.4900 73.2370 0.6799 0.6125 TS436 52
53 TS319 81.2500 76.7630 0.6631 0.8209 81.2500 76.7630 0.6631 0.8209 TS319 53
54 TS273 81.2500 76.7630 0.6631 0.8209 82.2120 76.7630 0.7304 0.8209 TS273 54
55 TS296 81.2500 76.7630 0.6631 0.8209 82.2120 76.7630 0.7304 0.8209 TS296 55
56 TS428 81.2500 76.2820 0.6631 0.7925 81.2500 76.2820 0.6631 0.7925 TS428 56
57 TS110 81.2500 76.2820 0.6631 0.7925 81.2500 76.2820 0.6631 0.7925 TS110 57
58 TS215 81.2500 74.3590 0.6631 0.6788 82.6920 76.4420 0.7639 0.8020 TS215 58
59 TS236 81.2500 73.3970 0.6631 0.6219 81.7310 76.9230 0.6967 0.8304 TS236 59
60 TS457 81.2500 70.2720 0.6631 0.4371 81.2500 73.0770 0.6631 0.6030 TS457 60
61 TS301 81.0100 76.6830 0.6463 0.8162 81.2500 76.7630 0.6631 0.8209 TS301 61
62 TS174 80.7690 77.5640 0.6294 0.8683 80.7690 77.5640 0.6294 0.8683 TS174 62
63 TS113 80.7690 76.2820 0.6294 0.7925 82.4520 76.8430 0.7471 0.8257 TS113 63
64 TS088 80.7690 75.3210 0.6294 0.7357 86.0580 81.8110 0.9994 1.1194 TS088 64
65 TS391 80.2880 75.8010 0.5958 0.7641 80.2880 75.8010 0.5958 0.7641 TS391 65
66 TS304 80.2880 71.3940 0.5958 0.5035 80.2880 71.3940 0.5958 0.5035 TS304 66
67 TS026 80.0480 75.7210 0.5790 0.7593 80.5290 75.7210 0.6126 0.7593 TS026 67
68 TS382 80.0480 70.5930 0.5790 0.4561 82.4520 78.4460 0.7471 0.9205 TS382 68
69 AL396 79.8080 76.1220 0.5622 0.7830 79.8080 76.1220 0.5622 0.7830 AL396 69
70 TS165 79.8080 74.8400 0.5622 0.7072 80.7690 75.9620 0.6294 0.7736 TS165 70
71 TS366 79.8080 73.0770 0.5622 0.6030 82.2120 77.2440 0.7304 0.8494 TS366 71
72 TS063 79.8080 73.0770 0.5622 0.6030 82.2120 77.7240 0.7304 0.8778 TS063 72
73 TS400 79.5670 74.5990 0.5453 0.6930 80.5290 74.5990 0.6126 0.6930 TS400 73
74 TS360 79.5670 74.5990 0.5453 0.6930 81.9710 77.1630 0.7135 0.8446 TS360 74
75 TS029 79.3270 73.2370 0.5286 0.6125 79.3270 73.2370 0.5286 0.6125 TS029 75
76 TS192 79.3270 73.0770 0.5286 0.6030 79.3270 73.0770 0.5286 0.6030 TS192 76
77 TS299 79.0870 75.8810 0.5118 0.7688 79.5670 75.8810 0.5453 0.7688 TS299 77
78 TS408 78.8460 75.3210 0.4949 0.7357 88.2210 86.6190 1.1507 1.4037 TS408 78
79 TS147 78.8460 71.3140 0.4949 0.4988 79.8080 75.7210 0.5622 0.7593 TS147 79
80 TS407 78.3650 69.8720 0.4613 0.4135 83.1730 79.1670 0.7976 0.9631 TS407 80
81 TS452 77.4040 68.5900 0.3940 0.3377 77.4040 68.5900 0.3940 0.3377 TS452 81
82 TS228 76.4420 69.5510 0.3268 0.3945 81.4900 74.9200 0.6799 0.7120 TS228 82
83 TS307 76.4420 67.9490 0.3268 0.2998 76.4420 68.5100 0.3268 0.3330 TS307 83
84 TS018 76.4420 67.3080 0.3268 0.2619 79.8080 74.6790 0.5622 0.6977 TS018 84
85 TS291 76.2020 61.8590 0.3100 -0.0603 76.2020 61.8590 0.3100 -0.0603 TS291 85
86 TS314 75.9620 69.8720 0.2932 0.4135 75.9620 69.8720 0.2932 0.4135 TS314 86
87 TS423 75.7210 69.7920 0.2763 0.4088 78.3650 71.7950 0.4613 0.5272 TS423 87
88 TS476 75.7210 67.5480 0.2763 0.2761 75.7210 67.5480 0.2763 0.2761 TS476 88
89 TS420 75.7210 67.5480 0.2763 0.2761 75.7210 67.5480 0.2763 0.2761 TS420 89
90 TS471 75.7210 67.5480 0.2763 0.2761 75.7210 67.5480 0.2763 0.2761 TS471 90
91 TS127 75.4810 66.6670 0.2595 0.2240 75.4810 66.6670 0.2595 0.2240 TS127 91
92 TS028 75.4810 63.4620 0.2595 0.0345 75.4810 63.4620 0.2595 0.0345 TS028 92
93 TS409 75.2400 66.9070 0.2427 0.2382 75.2400 66.9070 0.2427 0.2382 TS409 93
94 TS170 75.2400 51.9230 0.2427 -0.6478 80.0480 68.3490 0.5790 0.3234 TS170 94
95 TS477 75.0000 62.6600 0.2259 -0.0129 75.0000 62.6600 0.2259 -0.0129 TS477 95
96 TS435 75.0000 62.6600 0.2259 -0.0129 75.0000 62.6600 0.2259 -0.0129 TS435 96
97 TS171 74.7600 68.5100 0.2091 0.3330 74.7600 68.5100 0.2091 0.3330 TS171 97
98 TS302 74.7600 67.7080 0.2091 0.2855 74.7600 67.7080 0.2091 0.2855 TS302 98
99 TS142 74.7600 67.7080 0.2091 0.2855 74.7600 67.7080 0.2091 0.2855 TS142 99
100 TS213 74.7600 66.1060 0.2091 0.1908 74.7600 66.1060 0.2091 0.1908 TS213 100
101 TS042 73.7980 61.1380 0.1418 -0.1029 73.7980 61.8590 0.1418 -0.0603 TS042 101
102 TS276 73.3170 52.3240 0.1082 -0.6241 73.3170 62.0190 0.1082 -0.0508 TS276 102
103 TS154 72.3560 67.3880 0.0409 0.2666 72.3560 67.3880 0.0409 0.2666 TS154 103
104 TS077 72.1150 63.6220 0.0241 0.0439 72.1150 63.6220 0.0241 0.0439 TS077 104
105 TS286 72.1150 63.6220 0.0241 0.0439 72.1150 63.6220 0.0241 0.0439 TS286 105
106 TS149 72.1150 63.6220 0.0241 0.0439 72.1150 63.6220 0.0241 0.0439 TS149 106
107 TS240 71.8750 62.5800 0.0073 -0.0177 71.8750 62.5800 0.0073 -0.0177 TS240 107
108 TS449 71.8750 62.5800 0.0073 -0.0177 71.8750 62.5800 0.0073 -0.0177 TS449 108
109 TS453 71.8750 62.5800 0.0073 -0.0177 71.8750 62.5800 0.0073 -0.0177 TS453 109
110 TS346 71.8750 62.5800 0.0073 -0.0177 71.8750 62.5800 0.0073 -0.0177 TS346 110
111 TS206 70.9130 62.5800 -0.0600 -0.0177 70.9130 62.5800 -0.0600 -0.0177 TS206 111
112 TS248 70.6730 64.5830 -0.0768 0.1008 71.1540 65.0640 -0.0431 0.1292 TS248 112
113 AL285 70.4330 65.7850 -0.0936 0.1718 75.0000 70.5130 0.2259 0.4514 AL285 113
114 TS311 70.1920 62.8210 -0.1104 -0.0034 70.1920 62.8210 -0.1104 -0.0034 TS311 114
115 TS207 69.9520 61.6190 -0.1272 -0.0745 77.6440 66.2660 0.4108 0.2003 TS207 115
116 TS345 65.6250 60.1760 -0.4299 -0.1598 79.5670 72.7560 0.5453 0.5840 TS345 116
117 TS173 65.6250 51.4420 -0.4299 -0.6762 81.0100 76.6830 0.6463 0.8162 TS173 117
118 TS450 65.1440 58.2530 -0.4635 -0.2735 65.1440 58.2530 -0.4635 -0.2735 TS450 118
119 TS353 57.9330 46.2340 -0.9679 -0.9842 58.4130 49.2790 -0.9343 -0.8041 TS353 119
120 TS200 50.9620 36.5380 -1.4555 -1.5575 50.9620 36.5380 -1.4555 -1.5575 TS200 120
121 TS250 50.2400 41.7470 -1.5060 -1.2495 72.1150 67.4680 0.0241 0.2713 TS250 121
122 TS220 50.0000 37.3400 -1.5228 -1.5101 58.6540 47.1150 -0.9175 -0.9321 TS220 122
123 TS447 50.0000 37.3400 -1.5228 -1.5101 58.6540 47.1150 -0.9175 -0.9321 TS447 123
124 TS347 50.0000 32.6920 -1.5228 -1.7849 83.6540 80.7690 0.8312 1.0578 TS347 124
125 TS358 50.0000 32.6920 -1.5228 -1.7849 81.9710 76.2020 0.7135 0.7878 TS358 125
126 TS289 46.8750 43.1890 -1.7414 -1.1642 46.8750 43.1890 -1.7414 -1.1642 TS289 126
127 TS117 45.9130 36.9390 -1.8087 -1.5338 46.8750 39.5030 -1.7414 -1.3822 TS117 127
128 TS257 45.4330 35.9780 -1.8423 -1.5906 45.4330 35.9780 -1.8423 -1.5906 TS257 128
129 TS045 45.1920 35.2560 -1.8591 -1.6333 70.6730 62.8210 -0.0768 -0.0034 TS045 129
130 TS218 44.2310 36.8590 -1.9263 -1.5385 44.9520 36.8590 -1.8759 -1.5385 TS218 130
131 TS245 42.0670 34.3750 -2.0777 -1.6854 42.0670 34.3750 -2.0777 -1.6854 TS245 131
132 TS153 40.3850 37.4200 -2.1954 -1.5053 40.3850 37.4200 -2.1954 -1.5053 TS153 132
133 TS035 33.6540 29.0060 -2.6662 -2.0028 33.6540 29.0060 -2.6662 -2.0028 TS035 133
134 TS328 33.6540 28.0450 -2.6662 -2.0596 33.6540 28.0450 -2.6662 -2.0596 TS328 134
135 TS355 30.0480 28.1250 -2.9184 -2.0549 48.7980 39.6630 -1.6069 -1.3727 TS355 135
136 TS350 26.9230 25.0000 -3.1370 -2.2397 32.6920 27.8850 -2.7335 -2.0691 TS350 136
137 TS020 26.6830 23.6380 -3.1538 -2.3202 26.6830 23.6380 -3.1538 -2.3202 TS020 137
138 TS229 26.2020 21.2340 -3.1874 -2.4624 26.2020 21.2340 -3.1874 -2.4624 TS229 138
139 TS084 25.2400 21.6350 -3.2547 -2.4387 29.5670 26.0420 -2.9521 -2.1781 TS084 139
140 TS182 24.2790 19.4710 -3.3220 -2.5666 30.0480 23.6380 -2.9184 -2.3202 TS182 140
141 TS264 24.0380 19.5510 -3.3388 -2.5619 34.1350 32.3720 -2.6325 -1.8038 TS264 141
142 TS373 23.7980 17.7880 -3.3556 -2.6661 26.6830 23.7980 -3.1538 -2.3108 TS373 142
143 TS014 23.0770 19.7120 -3.4060 -2.5524 26.9230 21.7150 -3.1370 -2.4339 TS014 143
144 RANDOM 21.23 17.69 -3.5352 -2.6719 21.23 17.69 -3.5352 -2.6719 RANDOM 144
145 TS278 19.7120 18.5900 -3.6414 -2.6187 19.7120 18.5900 -3.6414 -2.6187 TS278 145
146 TS129 18.7500 16.1860 -3.7087 -2.7608 23.0770 18.7500 -3.4060 -2.6092 TS129 146
147 TS333 14.9040 11.3780 -3.9777 -3.0451 34.1350 27.0830 -2.6325 -2.1165 TS333 147
148 TS016             -3.5352 -2.6719             -3.5352 -2.6719 TS016 148
149 TS039             -3.5352 -2.6719             -3.5352 -2.6719 TS039 149
150 TS044             -3.5352 -2.6719             -3.5352 -2.6719 TS044 150
151 TS060             -3.5352 -2.6719             -3.5352 -2.6719 TS060 151
152 TS074             -3.5352 -2.6719             -3.5352 -2.6719 TS074 152
153 TS075             -3.5352 -2.6719             -3.5352 -2.6719 TS075 153
154 TS086             -3.5352 -2.6719             -3.5352 -2.6719 TS086 154
155 TS105             -3.5352 -2.6719             -3.5352 -2.6719 TS105 155
156 TS140             -3.5352 -2.6719             -3.5352 -2.6719 TS140 156
157 TS150             -3.5352 -2.6719             -3.5352 -2.6719 TS150 157
158 TS152             -3.5352 -2.6719             -3.5352 -2.6719 TS152 158
159 TS160             -3.5352 -2.6719             -3.5352 -2.6719 TS160 159
160 TS178             -3.5352 -2.6719             -3.5352 -2.6719 TS178 160
161 TS180             -3.5352 -2.6719             -3.5352 -2.6719 TS180 161
162 TS184             -3.5352 -2.6719             -3.5352 -2.6719 TS184 162
163 TS189             -3.5352 -2.6719             -3.5352 -2.6719 TS189 163
164 TS242             -3.5352 -2.6719             -3.5352 -2.6719 TS242 164
165 TS254             -3.5352 -2.6719             -3.5352 -2.6719 TS254 165
166 TS261             -3.5352 -2.6719             -3.5352 -2.6719 TS261 166
167 TS263             -3.5352 -2.6719             -3.5352 -2.6719 TS263 167
168 TS269             -3.5352 -2.6719             -3.5352 -2.6719 TS269 168
169 TS279             -3.5352 -2.6719             -3.5352 -2.6719 TS279 169
170 TS282             -3.5352 -2.6719             -3.5352 -2.6719 TS282 170
171 TS322             -3.5352 -2.6719             -3.5352 -2.6719 TS322 171
172 TS330             -3.5352 -2.6719             -3.5352 -2.6719 TS330 172
173 TS331             -3.5352 -2.6719             -3.5352 -2.6719 TS331 173
174 TS336             -3.5352 -2.6719             -3.5352 -2.6719 TS336 174
175 TS362             -3.5352 -2.6719             -3.5352 -2.6719 TS362 175
176 TS433             -3.5352 -2.6719             -3.5352 -2.6719 TS433 176
177 TS439             -3.5352 -2.6719             -3.5352 -2.6719 TS439 177
178 TS444             -3.5352 -2.6719             -3.5352 -2.6719 TS444 178