T0581

Targets
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539 540 541 542
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551 552 553 554
555 556 557 558
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643      

T0581

NP_252301.1 from Pseudomonas aeruginosa PA01

Target type: Human/Server

Target sequence:

>T0581 NP_252301.1, Pseudomonas aeruginosa PA01, 142 residues
MSRFMALALCFVLPTAAHAASLKDFELSKMLEKVAKESSVGTPRAINEDILDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLARGAILTYSFTEYKTNQPVATERFDAGSCRIQGKK

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3npd

Jmol of T0581 structure : 3npd

PyMOL of T0581

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0581A0-13120-131

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Hard target for me

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

1hml_A | PyMOL of 1hml A, This is not a good template. Target sequence only only has some N-terminal (-164) similarity with it (Identities=28%).

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

no good assignment to Pfam.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0581 T0581 T0581 T0581
First score First Z-score Best score Best Z-score
1 TS170 68.5270 61.9790 6.3415 6.5312 68.5270 61.9790 6.3415 6.5312 TS170 1
2 TS172 48.2140 38.6900 3.4433 2.8487 48.2140 38.6900 3.4433 2.8487 TS172 2
3 TS365 45.9820 40.7740 3.1249 3.1782 45.9820 40.7740 3.1249 3.1782 TS365 3
4 TS083 34.5980 27.1580 1.5006 1.0252 34.5980 27.1580 1.5006 1.0252 TS083 4
5 TS061 33.7050 29.9850 1.3732 1.4722 33.7050 29.9850 1.3732 1.4722 TS061 5
6 TS236 32.8120 30.7290 1.2458 1.5898 32.8120 30.7290 1.2458 1.5898 TS236 6
7 TS321 32.8120 26.1160 1.2458 0.8604 64.7320 57.2920 5.8000 5.7900 TS321 7
8 TS419 32.8120 26.1160 1.2458 0.8604 32.8120 26.1160 1.2458 0.8604 TS419 8
9 TS192 32.8120 26.1160 1.2458 0.8604 32.8120 26.1160 1.2458 0.8604 TS192 9
10 TS110 31.0270 28.4970 0.9912 1.2369 32.8120 28.4970 1.2458 1.2369 TS110 10
11 TS096 30.8040 25.7440 0.9593 0.8016 33.0360 25.7440 1.2778 0.8016 TS096 11
12 TS016 30.5800 28.1990 0.9274 1.1898 30.5800 28.3480 0.9274 1.2133 TS016 12
13 TS418 30.5800 24.9260 0.9274 0.6723 35.0450 29.6870 1.5644 1.4251 TS418 13
14 TS276 30.1340 27.0090 0.8637 1.0016 31.4730 27.4550 1.0548 1.0721 TS276 14
15 TS077 30.1340 27.0090 0.8637 1.0016 31.4730 27.4550 1.0548 1.0721 TS077 15
16 TS075 30.1340 27.0090 0.8637 1.0016 31.4730 27.4550 1.0548 1.0721 TS075 16
17 TS407 30.1340 27.0090 0.8637 1.0016 30.1340 27.0090 0.8637 1.0016 TS407 17
18 TS286 30.1340 27.0090 0.8637 1.0016 31.4730 27.4550 1.0548 1.0721 TS286 18
19 TS395 30.1340 26.1160 0.8637 0.8604 31.9200 27.0090 1.1186 1.0016 TS395 19
20 TS063 30.1340 25.0740 0.8637 0.6957 30.1340 25.6700 0.8637 0.7899 TS063 20
21 TS361 30.1340 24.7770 0.8637 0.6487 30.1340 25.0740 0.8637 0.6957 TS361 21
22 TS114 30.1340 24.7770 0.8637 0.6487 37.2770 34.5980 1.8829 2.2016 TS114 22
23 TS450 29.9110 28.2740 0.8319 1.2016 29.9110 28.2740 0.8319 1.2016 TS450 23
24 TS428 29.9110 24.8510 0.8319 0.6604 29.9110 24.8510 0.8319 0.6604 TS428 24
25 TS253 29.4640 25.4460 0.7682 0.7545 29.4640 25.4460 0.7682 0.7545 TS253 25
26 TS490 29.4640 24.8510 0.7682 0.6604 33.9290 29.7620 1.4052 1.4369 TS490 26
27 TS240 29.4640 23.8100 0.7682 0.4958 29.4640 23.8100 0.7682 0.4958 TS240 27
28 TS147 29.2410 26.2650 0.7363 0.8840 29.2410 26.2650 0.7363 0.8840 TS147 28
29 TS291 29.2410 26.1160 0.7363 0.8604 33.0360 26.9350 1.2778 0.9899 TS291 29
30 TS429 29.2410 25.9670 0.7363 0.8369 29.2410 25.9670 0.7363 0.8369 TS429 30
31 TS353 29.0180 25.5950 0.7045 0.7780 29.0180 25.5950 0.7045 0.7780 TS353 31
32 TS094 29.0180 24.2560 0.7045 0.5663 29.9110 24.8510 0.8319 0.6604 TS094 32
33 TS380 29.0180 24.2560 0.7045 0.5663 29.0180 24.2560 0.7045 0.5663 TS380 33
34 TS037 28.7950 24.6280 0.6727 0.6251 33.0360 26.4880 1.2778 0.9192 TS037 34
35 TS088 28.5710 24.1070 0.6407 0.5427 33.7050 25.9670 1.3732 0.8369 TS088 35
36 TS408 28.3480 24.1820 0.6089 0.5546 65.6250 63.8390 5.9274 6.8253 TS408 36
37 TS423 28.1250 26.1900 0.5771 0.8721 29.0180 26.1900 0.7045 0.8721 TS423 37
38 TS458 28.1250 23.2140 0.5771 0.4015 28.3480 27.3810 0.6089 1.0604 TS458 38
39 TS104 28.1250 21.8750 0.5771 0.1898 40.8480 34.0770 2.3924 2.1192 TS104 39
40 TS295 27.9020 24.8510 0.5453 0.6604 33.7050 28.4970 1.3732 1.2369 TS295 40
41 TS470 27.6790 23.2890 0.5135 0.4134 29.9110 24.8510 0.8319 0.6604 TS470 41
42 TS355 27.6790 19.4200 0.5135 -0.1984 27.6790 23.6610 0.5135 0.4722 TS355 42
43 TS042 27.0090 26.7110 0.4179 0.9545 34.3750 29.1670 1.4688 1.3428 TS042 43
44 TS400 26.7860 20.2380 0.3861 -0.0690 29.4640 26.0420 0.7682 0.8487 TS400 44
45 TS060 26.5620 23.4380 0.3541 0.4370 30.5800 23.9580 0.9274 0.5192 TS060 45
46 TS166 26.3390 19.3450 0.3223 -0.2102 26.3390 21.0570 0.3223 0.0605 TS166 46
47 TS002 26.1160 23.2890 0.2905 0.4134 26.1160 23.2890 0.2905 0.4134 TS002 47
48 TS345 26.1160 20.7590 0.2905 0.0134 26.1160 21.3540 0.2905 0.1074 TS345 48
49 TS045 25.8930 20.5360 0.2587 -0.0219 37.0540 29.3900 1.8511 1.3781 TS045 49
50 TS084 25.6700 23.8840 0.2268 0.5075 32.8120 24.3300 1.2458 0.5780 TS084 50
51 TS080 25.4460 22.4700 0.1949 0.2839 25.4460 22.4700 0.1949 0.2839 TS080 51
52 TS119 25.4460 22.1730 0.1949 0.2369 28.3480 25.6700 0.6089 0.7899 TS119 52
53 TS215 25.4460 22.0240 0.1949 0.2134 28.5710 23.5120 0.6407 0.4487 TS215 53
54 TS324 25.2230 21.6520 0.1631 0.1546 25.4460 22.9910 0.1949 0.3663 TS324 54
55 TS297 25.0000 19.3450 0.1313 -0.2102 26.1160 23.4380 0.2905 0.4370 TS297 55
56 TS113 24.7770 23.0650 0.0994 0.3780 30.3570 25.0000 0.8956 0.6840 TS113 56
57 TS452 24.7770 22.3960 0.0994 0.2722 24.7770 22.3960 0.0994 0.2722 TS452 57
58 TS457 24.7770 17.1130 0.0994 -0.5632 27.0090 22.3960 0.4179 0.2722 TS457 58
59 TS257 24.5540 19.4940 0.0676 -0.1867 25.4460 21.3540 0.1949 0.1074 TS257 59
60 TS207 24.3300 16.8900 0.0357 -0.5984 24.3300 20.2380 0.0357 -0.0690 TS207 60
61 TS200 24.1070 23.3630 0.0038 0.4251 24.1070 23.3630 0.0038 0.4251 TS200 61
62 TS214 23.8840 21.7260 -0.0280 0.1663 26.1160 22.8420 0.2905 0.3427 TS214 62
63 TS424 23.8840 21.0570 -0.0280 0.0605 63.6160 60.6400 5.6408 6.3194 TS424 63
64 TS399 23.8840 21.0570 -0.0280 0.0605 29.6880 27.7530 0.8001 1.1193 TS399 64
65 TS409 23.8840 20.0150 -0.0280 -0.1043 23.8840 20.0150 -0.0280 -0.1043 TS409 65
66 TS047 23.8840 20.0150 -0.0280 -0.1043 23.8840 20.0150 -0.0280 -0.1043 TS047 66
67 TS382 23.6610 21.4290 -0.0598 0.1193 33.2590 29.6870 1.3096 1.4251 TS382 67
68 TS278 23.6610 20.2380 -0.0598 -0.0690 23.6610 20.2380 -0.0598 -0.0690 TS278 68
69 TS307 23.6610 17.0390 -0.0598 -0.5749 24.3300 22.1730 0.0357 0.2369 TS307 69
70 TS350 23.4380 21.2800 -0.0916 0.0957 29.9110 24.8510 0.8319 0.6604 TS350 70
71 TS244 23.4380 20.3870 -0.0916 -0.0455 23.4380 20.3870 -0.0916 -0.0455 TS244 71
72 TS302 23.2140 20.3870 -0.1236 -0.0455 23.2140 20.3870 -0.1236 -0.0455 TS302 72
73 TS142 23.2140 20.3870 -0.1236 -0.0455 23.2140 20.3870 -0.1236 -0.0455 TS142 73
74 TS289 23.2140 20.3870 -0.1236 -0.0455 23.2140 20.3870 -0.1236 -0.0455 TS289 74
75 TS420 22.9910 21.0570 -0.1554 0.0605 22.9910 21.0570 -0.1554 0.0605 TS420 75
76 TS296 22.9910 20.6100 -0.1554 -0.0102 22.9910 20.6100 -0.1554 -0.0102 TS296 76
77 TS165 22.7680 22.3210 -0.1872 0.2603 22.7680 22.3210 -0.1872 0.2603 TS165 77
78 TS275 22.7680 19.5680 -0.1872 -0.1750 22.7680 21.6520 -0.1872 0.1546 TS275 78
79 TS055 22.7680 18.4520 -0.1872 -0.3514 28.5710 23.5120 0.6407 0.4487 TS055 79
80 TS316 22.5450 20.4610 -0.2190 -0.0338 34.3750 29.1670 1.4688 1.3428 TS316 80
81 TS481 22.3210 19.5680 -0.2510 -0.1750 22.7680 20.6850 -0.1872 0.0017 TS481 81
82 TS484 22.3210 18.8990 -0.2510 -0.2808 29.4640 22.7680 0.7682 0.3310 TS484 82
83 TS242 22.0980 18.2290 -0.2828 -0.3867 22.0980 20.7590 -0.2828 0.0134 TS242 83
84 TS102 21.8750 20.0890 -0.3146 -0.0926 22.5450 20.1640 -0.2190 -0.0807 TS102 84
85 TS174 21.6520 16.4430 -0.3464 -0.6691 26.3390 20.1640 0.3223 -0.0807 TS174 85
86 TS360 21.6520 15.1040 -0.3464 -0.8808 22.3210 17.4110 -0.2510 -0.5160 TS360 86
87 TS149 21.4290 20.6850 -0.3782 0.0017 21.4290 20.6850 -0.3782 0.0017 TS149 87
88 TS435 21.2050 18.0060 -0.4102 -0.4220 22.0980 19.4940 -0.2828 -0.1867 TS435 88
89 TS314 20.9820 19.5680 -0.4420 -0.1750 20.9820 19.5680 -0.4420 -0.1750 TS314 89
90 TS182 20.9820 17.8570 -0.4420 -0.4455 25.2230 23.0650 0.1631 0.3780 TS182 90
91 TS336 20.9820 17.4110 -0.4420 -0.5160 20.9820 17.4110 -0.4420 -0.5160 TS336 91
92 TS366 20.7590 18.8240 -0.4738 -0.2926 23.4380 21.9490 -0.0916 0.2015 TS366 92
93 TS282 20.7590 15.1790 -0.4738 -0.8690 22.9910 20.0150 -0.1554 -0.1043 TS282 93
94 TS477 20.5360 18.3040 -0.5056 -0.3748 30.1340 27.0090 0.8637 1.0016 TS477 94
95 TS299 20.5360 16.6670 -0.5056 -0.6337 21.6520 20.4610 -0.3464 -0.0338 TS299 95
96 TS028 20.3120 18.2290 -0.5376 -0.3867 20.3120 18.2290 -0.5376 -0.3867 TS028 96
97 TS220 20.3120 16.5920 -0.5376 -0.6455 21.2050 17.6340 -0.4102 -0.4808 TS220 97
98 TS447 20.3120 16.5920 -0.5376 -0.6455 21.2050 17.6340 -0.4102 -0.4808 TS447 98
99 TS461 20.0890 19.5680 -0.5694 -0.1750 21.6520 20.1640 -0.3464 -0.0807 TS461 99
100 TS328 20.0890 18.6760 -0.5694 -0.3160 20.0890 18.6760 -0.5694 -0.3160 TS328 100
101 TS373 20.0890 18.6010 -0.5694 -0.3279 22.0980 19.8660 -0.2828 -0.1278 TS373 101
102 TS304 20.0890 18.3040 -0.5694 -0.3748 20.5360 18.3040 -0.5056 -0.3748 TS304 102
103 TS127 20.0890 15.4760 -0.5694 -0.8220 23.2140 21.6520 -0.1236 0.1546 TS127 103
104 TS020 19.6430 17.8570 -0.6331 -0.4455 22.0980 20.6850 -0.2828 0.0017 TS020 104
105 TS103 19.6430 17.4110 -0.6331 -0.5160 19.6430 17.4110 -0.6331 -0.5160 TS103 105
106 TS173 19.4200 19.2710 -0.6649 -0.2219 26.7860 22.3960 0.3861 0.2722 TS173 106
107 TS213 19.4200 18.7500 -0.6649 -0.3043 20.5360 18.7500 -0.5056 -0.3043 TS213 107
108 TS391 19.4200 16.2950 -0.6649 -0.6925 19.4200 16.2950 -0.6649 -0.6925 TS391 108
109 RANDOM 18.94 15.72 -0.7334 -0.7834 18.94 15.72 -0.7334 -0.7834 RANDOM 109
110 TS273 18.7500 18.7500 -0.7605 -0.3043 26.7860 22.0240 0.3861 0.2134 TS273 110
111 TS319 18.7500 18.6010 -0.7605 -0.3279 22.7680 21.6520 -0.1872 0.1546 TS319 111
112 TS056 18.5270 18.3780 -0.7923 -0.3631 20.0890 19.4940 -0.5694 -0.1867 TS056 112
113 TS218 18.5270 15.9970 -0.7923 -0.7396 18.5270 15.9970 -0.7923 -0.7396 TS218 113
114 TS402 18.5270 15.4760 -0.7923 -0.8220 32.1430 24.1820 1.1504 0.5546 TS402 114
115 TS014 18.5270 14.0620 -0.7923 -1.0456 19.1960 18.1550 -0.6968 -0.3984 TS014 115
116 TS264 18.3040 16.8900 -0.8241 -0.5984 20.7590 16.9640 -0.4738 -0.5867 TS264 116
117 TS333 18.3040 12.6490 -0.8241 -1.2690 21.8750 19.2710 -0.3146 -0.2219 TS333 117
118 TS117 18.0800 15.9970 -0.8561 -0.7396 23.2140 20.2380 -0.1236 -0.0690 TS117 118
119 TS026 17.4110 14.8070 -0.9515 -0.9278 20.3120 17.7830 -0.5376 -0.4572 TS026 119
120 TS444 17.4110 14.7320 -0.9515 -0.9396 20.0890 15.5510 -0.5694 -0.8101 TS444 120
121 TS029 17.4110 13.0950 -0.9515 -1.1985 20.0890 19.3450 -0.5694 -0.2102 TS029 121
122 TS229 17.4110 12.6490 -0.9515 -1.2690 19.8660 17.5600 -0.6012 -0.4925 TS229 122
123 TS250 17.1880 14.2110 -0.9833 -1.0220 17.1880 14.2110 -0.9833 -1.0220 TS250 123
124 TS476 16.9640 16.9640 -1.0153 -0.5867 16.9640 16.9640 -1.0153 -0.5867 TS476 124
125 TS018 16.9640 14.0620 -1.0153 -1.0456 16.9640 15.2530 -1.0153 -0.8573 TS018 125
126 TS471 16.7410 15.8480 -1.0471 -0.7632 16.7410 15.8480 -1.0471 -0.7632 TS471 126
127 TS449 16.7410 12.4260 -1.0471 -1.3043 16.7410 12.4260 -1.0471 -1.3043 TS449 127
128 TS453 16.7410 12.4260 -1.0471 -1.3043 16.7410 12.4260 -1.0471 -1.3043 TS453 128
129 TS346 16.7410 12.4260 -1.0471 -1.3043 16.7410 12.4260 -1.0471 -1.3043 TS346 129
130 TS206 16.5180 14.7320 -1.0789 -0.9396 16.5180 14.7320 -1.0789 -0.9396 TS206 130
131 TS208 16.2950 12.7230 -1.1107 -1.2573 21.6520 20.1640 -0.3464 -0.0807 TS208 131
132 TS311 16.0710 13.3930 -1.1427 -1.1514 21.4290 17.4110 -0.3782 -0.5160 TS311 132
133 AL396 14.9550 12.1280 -1.3019 -1.3514 25.6700 21.8010 0.2268 0.1781 AL396 133
134 TS001 14.7320 12.8720 -1.3337 -1.2338 26.7860 22.0240 0.3861 0.2134 TS001 134
135 TS436 14.2860 10.7140 -1.3974 -1.5750 19.4200 16.5180 -0.6649 -0.6572 TS436 135
136 TS129 14.0620 10.7890 -1.4293 -1.5631 17.8570 14.2860 -0.8879 -1.0102 TS129 136
137 TS171 13.1700 11.5330 -1.5566 -1.4455 13.1700 11.5330 -1.5566 -1.4455 TS171 137
138 AL285 13.1700 11.3840 -1.5566 -1.4690 16.7410 15.6990 -1.0471 -0.7867 AL285 138
139 TS248 13.1700 11.3100 -1.5566 -1.4807 13.6160 11.5330 -1.4930 -1.4455 TS248 139
140 TS301 9.5980 9.1520 -2.0662 -1.8220 18.7500 18.6010 -0.7605 -0.3279 TS301 140
141 TS009             -0.7334 -0.7834             -0.7334 -0.7834 TS009 141
142 TS033             -0.7334 -0.7834             -0.7334 -0.7834 TS033 142
143 TS035             -0.7334 -0.7834             -0.7334 -0.7834 TS035 143
144 TS039             -0.7334 -0.7834             -0.7334 -0.7834 TS039 144
145 TS044             -0.7334 -0.7834             -0.7334 -0.7834 TS044 145
146 TS074             -0.7334 -0.7834             -0.7334 -0.7834 TS074 146
147 TS086             -0.7334 -0.7834             -0.7334 -0.7834 TS086 147
148 TS105             -0.7334 -0.7834             -0.7334 -0.7834 TS105 148
149 TS140             -0.7334 -0.7834             -0.7334 -0.7834 TS140 149
150 TS150             -0.7334 -0.7834             -0.7334 -0.7834 TS150 150
151 TS152             -0.7334 -0.7834             -0.7334 -0.7834 TS152 151
152 TS153             -0.7334 -0.7834             -0.7334 -0.7834 TS153 152
153 TS154             -0.7334 -0.7834             -0.7334 -0.7834 TS154 153
154 TS160             -0.7334 -0.7834             -0.7334 -0.7834 TS160 154
155 TS178             -0.7334 -0.7834             -0.7334 -0.7834 TS178 155
156 TS180             -0.7334 -0.7834             -0.7334 -0.7834 TS180 156
157 TS184             -0.7334 -0.7834             -0.7334 -0.7834 TS184 157
158 TS186             -0.7334 -0.7834             -0.7334 -0.7834 TS186 158
159 TS189             -0.7334 -0.7834             -0.7334 -0.7834 TS189 159
160 TS199             -0.7334 -0.7834             -0.7334 -0.7834 TS199 160
161 TS228             -0.7334 -0.7834             -0.7334 -0.7834 TS228 161
162 TS245             -0.7334 -0.7834             -0.7334 -0.7834 TS245 162
163 TS254             -0.7334 -0.7834             -0.7334 -0.7834 TS254 163
164 TS261             -0.7334 -0.7834             -0.7334 -0.7834 TS261 164
165 TS263             -0.7334 -0.7834             -0.7334 -0.7834 TS263 165
166 TS269             -0.7334 -0.7834             -0.7334 -0.7834 TS269 166
167 TS279             -0.7334 -0.7834             -0.7334 -0.7834 TS279 167
168 TS300             -0.7334 -0.7834             -0.7334 -0.7834 TS300 168
169 TS322             -0.7334 -0.7834             -0.7334 -0.7834 TS322 169
170 TS330             -0.7334 -0.7834             -0.7334 -0.7834 TS330 170
171 TS331             -0.7334 -0.7834             -0.7334 -0.7834 TS331 171
172 TS347             -0.7334 -0.7834             -0.7334 -0.7834 TS347 172
173 TS358             -0.7334 -0.7834             -0.7334 -0.7834 TS358 173
174 TS362             -0.7334 -0.7834             -0.7334 -0.7834 TS362 174
175 TS386             -0.7334 -0.7834             -0.7334 -0.7834 TS386 175
176 TS403             -0.7334 -0.7834             -0.7334 -0.7834 TS403 176
177 TS433             -0.7334 -0.7834             -0.7334 -0.7834 TS433 177
178 TS439             -0.7334 -0.7834             -0.7334 -0.7834 TS439 178