T0541

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0541

MvR254A from unknown species

Target type: Server only

Target sequence:

>T0541 MvR254A, unknown species, 106 residues
MIPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPENAVNEGNESNNTLTALVGT

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l0d

Jmol of T0541 structure : 2l0d

PyMOL of T0541

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0541A1-1141-106

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Immunoglobulin-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3idu_A | PyMOL of 3idu A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

CARDB (PF07705).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0541 T0541 T0541 T0541
First score First Z-score Best score Best Z-score
1 TS228 87.2640 85.6920 1.2862 2.3225 87.2640 85.6920 1.2862 2.3225 TS228 1
2 TS080 83.0190 73.2700 0.8697 0.9794 83.0190 73.2700 0.8697 0.9794 TS080 2
3 TS104 83.0190 72.0130 0.8697 0.8435 83.0190 72.0130 0.8697 0.8435 TS104 3
4 TS215 82.5470 72.4840 0.8234 0.8944 83.0190 73.2700 0.8697 0.9794 TS215 4
5 TS173 82.0750 75.7860 0.7770 1.2514 83.0190 76.4150 0.8697 1.3195 TS173 5
6 TS056 81.8400 70.2040 0.7540 0.6479 81.8400 70.2040 0.7540 0.6479 TS056 6
7 TS490 81.6040 71.6980 0.7308 0.8095 81.6040 71.6980 0.7308 0.8095 TS490 7
8 TS114 81.6040 71.0690 0.7308 0.7414 81.6040 71.1480 0.7308 0.7500 TS114 8
9 TS452 81.6040 69.9690 0.7308 0.6225 81.6040 71.3050 0.7308 0.7670 TS452 9
10 TS428 81.3680 71.9340 0.7077 0.8350 81.3680 71.9340 0.7077 0.8350 TS428 10
11 TS037 81.3680 70.9910 0.7077 0.7330 82.5470 73.4280 0.8234 0.9965 TS037 11
12 TS094 81.3680 70.3620 0.7077 0.6650 81.8400 70.3620 0.7540 0.6650 TS094 12
13 TS077 81.3680 70.3620 0.7077 0.6650 81.3680 70.3620 0.7077 0.6650 TS077 13
14 TS286 81.3680 70.3620 0.7077 0.6650 81.3680 70.3620 0.7077 0.6650 TS286 14
15 TS208 81.3680 70.0470 0.7077 0.6309 81.3680 70.1260 0.7077 0.6395 TS208 15
16 TS291 81.1320 72.1700 0.6845 0.8605 81.1320 72.1700 0.6845 0.8605 TS291 16
17 TS102 81.1320 71.2260 0.6845 0.7584 81.1320 71.6190 0.6845 0.8009 TS102 17
18 TS207 81.1320 69.8110 0.6845 0.6054 81.1320 70.9910 0.6845 0.7330 TS207 18
19 TS361 81.1320 69.4970 0.6845 0.5715 82.7830 73.9780 0.8465 1.0560 TS361 19
20 TS380 80.8960 73.0350 0.6613 0.9540 82.3110 73.0350 0.8002 0.9540 TS380 20
21 TS449 80.8960 72.2480 0.6613 0.8689 80.8960 72.2480 0.6613 0.8689 TS449 21
22 TS453 80.8960 72.2480 0.6613 0.8689 80.8960 72.2480 0.6613 0.8689 TS453 22
23 TS346 80.8960 72.2480 0.6613 0.8689 80.8960 72.2480 0.6613 0.8689 TS346 23
24 TS119 80.8960 67.6890 0.6613 0.3760 81.6040 70.4400 0.7308 0.6734 TS119 24
25 TS302 80.8960 66.1160 0.6613 0.2059 80.8960 66.1160 0.6613 0.2059 TS302 25
26 TS142 80.8960 66.1160 0.6613 0.2059 80.8960 66.1160 0.6613 0.2059 TS142 26
27 TS419 80.6600 69.6540 0.6382 0.5885 80.6600 69.6540 0.6382 0.5885 TS419 27
28 TS275 80.6600 69.3400 0.6382 0.5545 81.6040 72.7990 0.7308 0.9285 TS275 28
29 TS018 80.6600 68.0820 0.6382 0.4185 80.6600 68.0820 0.6382 0.4185 TS018 29
30 TS063 80.4250 74.7640 0.6151 1.1409 80.4250 74.7640 0.6151 1.1409 TS063 30
31 TS481 80.4250 71.6190 0.6151 0.8009 80.4250 71.6190 0.6151 0.8009 TS481 31
32 TS407 80.4250 68.9470 0.6151 0.5120 82.3110 71.3050 0.8002 0.7670 TS407 32
33 TS047 80.4250 68.4750 0.6151 0.4610 80.4250 68.4750 0.6151 0.4610 TS047 33
34 TS035 80.4250 67.0600 0.6151 0.3080 80.4250 67.0600 0.6151 0.3080 TS035 34
35 TS236 80.1890 69.1820 0.5920 0.5374 80.8960 70.3620 0.6613 0.6650 TS236 35
36 TS476 79.9530 69.1040 0.5688 0.5290 79.9530 69.1040 0.5688 0.5290 TS476 36
37 TS470 79.9530 68.6320 0.5688 0.4780 81.3680 70.0470 0.7077 0.6309 TS470 37
38 TS166 79.9530 68.6320 0.5688 0.4780 79.9530 68.6320 0.5688 0.4780 TS166 38
39 TS113 79.7170 68.2390 0.5456 0.4355 80.8960 69.8900 0.6613 0.6140 TS113 39
40 TS244 79.7170 68.2390 0.5456 0.4355 79.7170 68.2390 0.5456 0.4355 TS244 40
41 TS436 79.7170 67.9250 0.5456 0.4015 79.9530 67.9250 0.5688 0.4015 TS436 41
42 TS409 79.7170 66.9810 0.5456 0.2995 79.7170 66.9810 0.5456 0.2995 TS409 42
43 TS001 79.4810 68.9470 0.5225 0.5120 79.9530 68.9470 0.5688 0.5120 TS001 43
44 TS296 79.4810 68.9470 0.5225 0.5120 79.4810 68.9470 0.5225 0.5120 TS296 44
45 TS314 79.4810 67.6890 0.5225 0.3760 79.4810 67.6890 0.5225 0.3760 TS314 45
46 TS002 79.2450 68.5530 0.4993 0.4694 83.0190 73.2700 0.8697 0.9794 TS002 46
47 TS457 79.0090 70.8330 0.4762 0.7159 79.0090 70.8330 0.4762 0.7159 TS457 47
48 TS429 79.0090 67.3740 0.4762 0.3419 81.1320 68.2390 0.6845 0.4355 TS429 48
49 TS321 78.7740 69.4970 0.4531 0.5715 78.7740 70.5970 0.4531 0.6904 TS321 49
50 TS088 78.7740 68.2390 0.4531 0.4355 79.9530 70.8330 0.5688 0.7159 TS088 50
51 TS127 78.7740 67.7670 0.4531 0.3844 80.1890 68.8680 0.5920 0.5035 TS127 51
52 TS345 78.3020 68.8680 0.4068 0.5035 78.3020 68.8680 0.4068 0.5035 TS345 52
53 TS026 78.3020 67.9250 0.4068 0.4015 78.7740 67.9250 0.4531 0.4015 TS026 53
54 TS319 78.3020 66.0380 0.4068 0.1975 79.9530 68.9470 0.5688 0.5120 TS319 54
55 TS273 78.3020 66.0380 0.4068 0.1975 79.9530 68.9470 0.5688 0.5120 TS273 55
56 TS245 78.0660 68.0030 0.3836 0.4100 78.0660 68.0030 0.3836 0.4100 TS245 56
57 TS165 78.0660 67.3740 0.3836 0.3419 80.4250 69.4970 0.6151 0.5715 TS165 57
58 TS218 78.0660 67.0600 0.3836 0.3080 78.5380 70.2040 0.4299 0.6479 TS218 58
59 TS395 77.8300 69.3400 0.3605 0.5545 78.7740 69.6540 0.4531 0.5885 TS395 59
60 TS103 77.8300 68.7110 0.3605 0.4865 77.8300 68.7110 0.3605 0.4865 TS103 60
61 TS366 77.8300 67.7670 0.3605 0.3844 80.6600 74.7640 0.6382 1.1409 TS366 61
62 TS307 77.5940 66.9030 0.3373 0.2910 78.7740 69.3400 0.4531 0.5545 TS307 62
63 TS028 77.5940 64.7010 0.3373 0.0529 77.5940 64.7010 0.3373 0.0529 TS028 63
64 TS420 77.3580 65.5660 0.3141 0.1465 79.7170 69.3400 0.5456 0.5545 TS420 64
65 TS471 77.3580 65.5660 0.3141 0.1465 79.7170 69.3400 0.5456 0.5545 TS471 65
66 TS328 76.4150 65.7230 0.2216 0.1634 76.4150 65.7230 0.2216 0.1634 TS328 66
67 TS171 76.4150 65.4090 0.2216 0.1295 79.4810 68.9470 0.5225 0.5120 TS171 67
68 TS214 76.1790 66.7450 0.1984 0.2739 77.5940 69.0250 0.3373 0.5204 TS214 68
69 TS253 76.1790 65.4870 0.1984 0.1379 79.2450 70.1260 0.4993 0.6395 TS253 69
70 TS213 75.7080 65.9590 0.1522 0.1890 79.9530 68.4750 0.5688 0.4610 TS213 70
71 TS174 75.7080 63.2860 0.1522 -0.1000 75.7080 63.2860 0.1522 -0.1000 TS174 71
72 TS276 75.4720 68.5530 0.1291 0.4694 75.4720 68.5530 0.1291 0.4694 TS276 72
73 AL285 75.0000 60.6920 0.0827 -0.3805 77.5940 65.0160 0.3373 0.0870 AL285 73
74 TS250 74.7640 63.9150 0.0596 -0.0320 78.0660 70.5190 0.3836 0.6820 TS250 74
75 TS117 74.2920 66.4310 0.0133 0.2400 77.1230 69.7330 0.2911 0.5970 TS117 75
76 TS391 72.8770 63.2860 -0.1256 -0.1000 72.8770 63.2860 -0.1256 -0.1000 TS391 76
77 TS055 66.2740 51.8080 -0.7736 -1.3410 71.6980 63.0500 -0.2413 -0.1256 TS055 77
78 TS435 64.1510 57.8620 -0.9819 -0.6865 64.1510 57.8620 -0.9819 -0.6865 TS435 78
79 AL396 62.2640 58.3330 -1.1671 -0.6356 77.3580 64.9370 0.3141 0.0785 AL396 79
80 TS248 54.4810 49.1350 -1.9308 -1.6300 54.7170 49.1350 -1.9077 -1.6300 TS248 80
81 TS304 43.8680 37.8930 -2.9723 -2.8455 43.8680 37.8930 -2.9723 -2.8455 TS304 81
82 TS350 25.0000 22.8770 -4.8239 -4.4690 30.6600 26.2580 -4.2685 -4.1035 TS350 82
83 TS355 24.0570 18.7110 -4.9164 -4.9195 24.7640 21.6190 -4.8471 -4.6051 TS355 83
84 TS257 23.5850 16.5880 -4.9628 -5.1490 27.3580 21.6980 -4.5925 -4.5965 TS257 84
85 TS229 22.6420 19.3400 -5.0553 -4.8515 29.2450 26.7300 -4.4073 -4.0525 TS229 85
86 RANDOM 20.29 16.91 -5.2861 -5.1142 20.29 16.91 -5.2861 -5.1142 RANDOM 86
87 TS264 16.5090 15.5660 -5.6571 -5.2595 20.5190 18.9470 -5.2636 -4.8940 TS264 87
88 TS444 16.0380 13.9940 -5.7034 -5.4295 19.3400 16.6670 -5.3793 -5.1405 TS444 88
89 TS009             -5.2861 -5.1142             -5.2861 -5.1142 TS009 89
90 TS014             -5.2861 -5.1142             -5.2861 -5.1142 TS014 90
91 TS016             -5.2861 -5.1142             -5.2861 -5.1142 TS016 91
92 TS020             -5.2861 -5.1142             -5.2861 -5.1142 TS020 92
93 TS029             -5.2861 -5.1142             -5.2861 -5.1142 TS029 93
94 TS033             -5.2861 -5.1142             -5.2861 -5.1142 TS033 94
95 TS039             -5.2861 -5.1142             -5.2861 -5.1142 TS039 95
96 TS042             -5.2861 -5.1142             -5.2861 -5.1142 TS042 96
97 TS044             -5.2861 -5.1142             -5.2861 -5.1142 TS044 97
98 TS045             -5.2861 -5.1142             -5.2861 -5.1142 TS045 98
99 TS060             -5.2861 -5.1142             -5.2861 -5.1142 TS060 99
100 TS061             -5.2861 -5.1142             -5.2861 -5.1142 TS061 100
101 TS074             -5.2861 -5.1142             -5.2861 -5.1142 TS074 101
102 TS075             -5.2861 -5.1142             -5.2861 -5.1142 TS075 102
103 TS083             -5.2861 -5.1142             -5.2861 -5.1142 TS083 103
104 TS084             -5.2861 -5.1142             -5.2861 -5.1142 TS084 104
105 TS086             -5.2861 -5.1142             -5.2861 -5.1142 TS086 105
106 TS096             -5.2861 -5.1142             -5.2861 -5.1142 TS096 106
107 TS105             -5.2861 -5.1142             -5.2861 -5.1142 TS105 107
108 TS110             -5.2861 -5.1142             -5.2861 -5.1142 TS110 108
109 TS129             -5.2861 -5.1142             -5.2861 -5.1142 TS129 109
110 TS140             -5.2861 -5.1142             -5.2861 -5.1142 TS140 110
111 TS147             -5.2861 -5.1142             -5.2861 -5.1142 TS147 111
112 TS149             -5.2861 -5.1142             -5.2861 -5.1142 TS149 112
113 TS150             -5.2861 -5.1142             -5.2861 -5.1142 TS150 113
114 TS152             -5.2861 -5.1142             -5.2861 -5.1142 TS152 114
115 TS153             -5.2861 -5.1142             -5.2861 -5.1142 TS153 115
116 TS154             -5.2861 -5.1142             -5.2861 -5.1142 TS154 116
117 TS160             -5.2861 -5.1142             -5.2861 -5.1142 TS160 117
118 TS170             -5.2861 -5.1142             -5.2861 -5.1142 TS170 118
119 TS172             -5.2861 -5.1142             -5.2861 -5.1142 TS172 119
120 TS178             -5.2861 -5.1142             -5.2861 -5.1142 TS178 120
121 TS180             -5.2861 -5.1142             -5.2861 -5.1142 TS180 121
122 TS182             -5.2861 -5.1142             -5.2861 -5.1142 TS182 122
123 TS184             -5.2861 -5.1142             -5.2861 -5.1142 TS184 123
124 TS186             -5.2861 -5.1142             -5.2861 -5.1142 TS186 124
125 TS189             -5.2861 -5.1142             -5.2861 -5.1142 TS189 125
126 TS192             -5.2861 -5.1142             -5.2861 -5.1142 TS192 126
127 TS199             -5.2861 -5.1142             -5.2861 -5.1142 TS199 127
128 TS200             -5.2861 -5.1142             -5.2861 -5.1142 TS200 128
129 TS206             -5.2861 -5.1142             -5.2861 -5.1142 TS206 129
130 TS220             -5.2861 -5.1142             -5.2861 -5.1142 TS220 130
131 TS240             -5.2861 -5.1142             -5.2861 -5.1142 TS240 131
132 TS242             -5.2861 -5.1142             -5.2861 -5.1142 TS242 132
133 TS254             -5.2861 -5.1142             -5.2861 -5.1142 TS254 133
134 TS261             -5.2861 -5.1142             -5.2861 -5.1142 TS261 134
135 TS263             -5.2861 -5.1142             -5.2861 -5.1142 TS263 135
136 TS269             -5.2861 -5.1142             -5.2861 -5.1142 TS269 136
137 TS278             -5.2861 -5.1142             -5.2861 -5.1142 TS278 137
138 TS279             -5.2861 -5.1142             -5.2861 -5.1142 TS279 138
139 TS282             -5.2861 -5.1142             -5.2861 -5.1142 TS282 139
140 TS289             -5.2861 -5.1142             -5.4951 -5.1490 TS289 140
141 TS295             -5.2861 -5.1142             -5.2861 -5.1142 TS295 141
142 TS297             -5.2861 -5.1142             -5.2861 -5.1142 TS297 142
143 TS299             -5.2861 -5.1142             -5.2861 -5.1142 TS299 143
144 TS300             -5.2861 -5.1142             -5.2861 -5.1142 TS300 144
145 TS301             -5.2861 -5.1142             -5.2861 -5.1142 TS301 145
146 TS311             -5.2861 -5.1142             -5.2861 -5.1142 TS311 146
147 TS316             -5.2861 -5.1142             -5.2861 -5.1142 TS316 147
148 TS322             -5.2861 -5.1142             -5.2861 -5.1142 TS322 148
149 TS324             -5.2861 -5.1142             -5.2861 -5.1142 TS324 149
150 TS330             -5.2861 -5.1142             -5.2861 -5.1142 TS330 150
151 TS331             -5.2861 -5.1142             -5.2861 -5.1142 TS331 151
152 TS333             -5.2861 -5.1142             -5.2861 -5.1142 TS333 152
153 TS336             -5.2861 -5.1142             -5.2861 -5.1142 TS336 153
154 TS347             -5.2861 -5.1142             -5.2861 -5.1142 TS347 154
155 TS353             -5.2861 -5.1142             -5.2861 -5.1142 TS353 155
156 TS358             -5.2861 -5.1142             -5.2861 -5.1142 TS358 156
157 TS360             -5.2861 -5.1142             -5.2861 -5.1142 TS360 157
158 TS362             -5.2861 -5.1142             -5.2861 -5.1142 TS362 158
159 TS365             -5.2861 -5.1142             -5.2861 -5.1142 TS365 159
160 TS373             -5.2861 -5.1142             -5.2861 -5.1142 TS373 160
161 TS382             -5.2861 -5.1142             -5.2861 -5.1142 TS382 161
162 TS386             -5.2861 -5.1142             -5.2861 -5.1142 TS386 162
163 TS399             -5.2861 -5.1142             -5.2861 -5.1142 TS399 163
164 TS400             -5.2861 -5.1142             -5.2861 -5.1142 TS400 164
165 TS402             -5.2861 -5.1142             -5.2861 -5.1142 TS402 165
166 TS403             -5.2861 -5.1142             -5.2861 -5.1142 TS403 166
167 TS408             -5.2861 -5.1142             -5.2861 -5.1142 TS408 167
168 TS418             -5.2861 -5.1142             -5.2861 -5.1142 TS418 168
169 TS423             -5.2861 -5.1142             -5.2861 -5.1142 TS423 169
170 TS424             -5.2861 -5.1142             -5.2861 -5.1142 TS424 170
171 TS433             -5.2861 -5.1142             -5.2861 -5.1142 TS433 171
172 TS439             -5.2861 -5.1142             -5.2861 -5.1142 TS439 172
173 TS447             -5.2861 -5.1142             -5.2861 -5.1142 TS447 173
174 TS450             -5.2861 -5.1142             -5.2861 -5.1142 TS450 174
175 TS458             -5.2861 -5.1142             -5.2861 -5.1142 TS458 175
176 TS461             -5.2861 -5.1142             -5.2861 -5.1142 TS461 176
177 TS477             -5.2861 -5.1142             -5.2861 -5.1142 TS477 177
178 TS484             -5.2861 -5.1142             -5.2861 -5.1142 TS484 178