T0606

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0606

ZP_02040151.1 from Ruminococcus gnavus

Target type: Human/Server

Target sequence:

>T0606 ZP_02040151.1, Ruminococcus gnavus, 169 residues
MKRRLILLVVVIALIAGFGALLHSPPSIIDAVTGATPKAKKAAQSSAQLEGSYIFCMNPLLDKLSDEDIREQLKAFVTGKTDSIRTDTELSFDIYVSETDYALIRYADSLCERLNDAGADVQIKQYSGTMLRSRAVSGKYEAFLSESDLVSTDALENADYIILDSAEMR

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3noh

Jmol of T0606 structure : 3noh

PyMOL of T0606

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0606A46-16846-168

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Two layers, alpha+beta, four strands in a sheet, 1423. 2 is antiparallel to the rest.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1vr5_A | PyMOL of 1vr5 A, This template only has local similarity to the target seq (52-146).

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No confident match available.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0606 T0606 T0606 T0606
First score First Z-score Best score Best Z-score
1 TS094 71.5450 69.5120 1.5319 1.8562 71.5450 69.5120 1.5319 1.8562 TS094 1
2 TS470 71.5450 69.5120 1.5319 1.8562 71.5450 69.5120 1.5319 1.8562 TS470 2
3 TS060 71.5450 69.5120 1.5319 1.8562 71.5450 69.5120 1.5319 1.8562 TS060 3
4 TS386 71.3410 69.4440 1.5208 1.8522 71.9510 69.4440 1.5542 1.8522 TS386 4
5 TS075 71.3410 62.2630 1.5208 1.4256 71.9510 63.9570 1.5542 1.5262 TS075 5
6 TS113 71.1380 69.1060 1.5097 1.8321 71.1380 69.1060 1.5097 1.8321 TS113 6
7 TS016 70.3250 60.7050 1.4652 1.3330 70.5280 67.4800 1.4763 1.7355 TS016 7
8 TS361 70.1220 60.6370 1.4540 1.3290 71.9510 62.1950 1.5542 1.4215 TS361 8
9 TS299 69.9190 68.5640 1.4429 1.7999 74.5930 69.6480 1.6988 1.8643 TS299 9
10 TS077 69.9190 60.2980 1.4429 1.3088 69.9190 60.2980 1.4429 1.3088 TS077 10
11 TS407 69.9190 60.2980 1.4429 1.3088 69.9190 60.2980 1.4429 1.3088 TS407 11
12 TS435 69.9190 60.2980 1.4429 1.3088 69.9190 60.2980 1.4429 1.3088 TS435 12
13 TS286 69.9190 60.2980 1.4429 1.3088 69.9190 60.2980 1.4429 1.3088 TS286 13
14 TS147 69.9190 59.4850 1.4429 1.2606 70.3250 66.8020 1.4652 1.6952 TS147 14
15 TS033 68.9020 56.9780 1.3873 1.1116 68.9020 60.7050 1.3873 1.3330 TS033 15
16 TS096 66.8700 56.0300 1.2760 1.0553 73.1710 64.3630 1.6210 1.5503 TS096 16
17 TS276 66.6670 56.5040 1.2649 1.0835 69.9190 60.2980 1.4429 1.3088 TS276 17
18 TS418 65.4470 54.6070 1.1981 0.9708 65.4470 60.4340 1.1981 1.3169 TS418 18
19 TS002 65.4470 54.6070 1.1981 0.9708 65.4470 56.0300 1.1981 1.0553 TS002 19
20 TS477 64.2280 62.8730 1.1314 1.4618 66.8700 63.4820 1.2760 1.4980 TS477 20
21 TS174 64.2280 52.2360 1.1314 0.8299 64.2280 52.2360 1.1314 0.8299 TS174 21
22 TS236 63.4150 61.2470 1.0869 1.3652 63.6180 61.2470 1.0980 1.3652 TS236 22
23 TS300 63.4150 47.5610 1.0869 0.5522 63.4150 54.8100 1.0869 0.9828 TS300 23
24 TS428 63.4150 47.5610 1.0869 0.5522 71.5450 69.5120 1.5319 1.8562 TS428 24
25 TS129 63.2110 58.8750 1.0757 1.2243 63.4150 59.2140 1.0869 1.2445 TS129 25
26 TS037 63.0080 48.6450 1.0646 0.6166 71.3410 61.0430 1.5208 1.3531 TS037 26
27 TS365 62.8050 52.7780 1.0535 0.8621 62.8050 52.7780 1.0535 0.8621 TS365 27
28 TS380 62.8050 49.9320 1.0535 0.6930 71.5450 69.5120 1.5319 1.8562 TS380 28
29 TS429 61.7890 50.4740 0.9979 0.7252 69.1060 61.6530 1.3984 1.3893 TS429 29
30 TS240 61.5850 53.7260 0.9867 0.9184 61.5850 53.7260 0.9867 0.9184 TS240 30
31 TS321 61.5850 53.7260 0.9867 0.9184 63.8210 60.2980 1.1091 1.3088 TS321 31
32 TS419 61.5850 53.7260 0.9867 0.9184 63.4150 53.7260 1.0869 0.9184 TS419 32
33 TS110 61.5850 53.7260 0.9867 0.9184 61.5850 53.7260 0.9867 0.9184 TS110 33
34 TS114 61.3820 55.5560 0.9756 1.0271 61.3820 55.5560 0.9756 1.0271 TS114 34
35 TS297 61.3820 53.7940 0.9756 0.9225 65.0410 56.5040 1.1759 1.0835 TS297 35
36 TS395 61.3820 51.2870 0.9756 0.7735 67.0730 63.8210 1.2871 1.5181 TS395 36
37 TS242 60.9760 55.6910 0.9534 1.0352 60.9760 55.6910 0.9534 1.0352 TS242 37
38 TS207 60.9760 54.8780 0.9534 0.9869 60.9760 54.8780 0.9534 0.9869 TS207 38
39 TS104 60.5690 49.7290 0.9311 0.6810 60.5690 49.7290 0.9311 0.6810 TS104 39
40 TS449 60.3660 54.6750 0.9200 0.9748 60.3660 54.6750 0.9200 0.9748 TS449 40
41 TS453 60.3660 54.6750 0.9200 0.9748 60.3660 54.6750 0.9200 0.9748 TS453 41
42 TS346 60.3660 54.6750 0.9200 0.9748 60.3660 54.6750 0.9200 0.9748 TS346 42
43 TS399 60.3660 52.5070 0.9200 0.8460 60.3660 52.5070 0.9200 0.8460 TS399 43
44 TS213 60.1630 56.7750 0.9089 1.0996 60.1630 56.7750 0.9089 1.0996 TS213 44
45 TS080 60.1630 51.6260 0.9089 0.7937 60.1630 53.9300 0.9089 0.9306 TS080 45
46 TS353 59.9590 50.7450 0.8977 0.7413 60.7720 57.2490 0.9422 1.1277 TS353 46
47 TS119 59.9590 50.3390 0.8977 0.7172 60.1630 55.5560 0.9089 1.0271 TS119 47
48 TS001 59.7560 56.9110 0.8866 1.1076 59.7560 56.9110 0.8866 1.1076 TS001 48
49 TS296 59.7560 56.9110 0.8866 1.1076 59.7560 56.9110 0.8866 1.1076 TS296 49
50 TS400 59.7560 53.5230 0.8866 0.9064 60.3660 53.5230 0.9200 0.9064 TS400 50
51 TS088 59.5530 54.5390 0.8755 0.9667 63.6180 57.5200 1.0980 1.1438 TS088 51
52 TS408 59.3500 48.7800 0.8644 0.6246 63.6180 56.2330 1.0980 1.0674 TS408 52
53 TS490 59.1460 49.9320 0.8532 0.6930 67.0730 54.8780 1.2871 0.9869 TS490 53
54 TS458 58.9430 49.7290 0.8421 0.6810 58.9430 51.0840 0.8421 0.7615 TS458 54
55 TS215 58.9430 48.9160 0.8421 0.6327 60.3660 56.0300 0.9200 1.0553 TS215 55
56 TS402 58.7400 51.2870 0.8310 0.7735 63.0080 52.7780 1.0646 0.8621 TS402 56
57 TS218 58.3330 52.6420 0.8087 0.8540 58.3330 53.2520 0.8087 0.8903 TS218 57
58 TS245 57.9270 50.8810 0.7865 0.7494 57.9270 50.8810 0.7865 0.7494 TS245 58
59 TS461 57.3170 47.6290 0.7531 0.5562 57.5200 48.1710 0.7642 0.5884 TS461 59
60 TS382 56.7070 49.1190 0.7197 0.6447 56.7070 50.6780 0.7197 0.7374 TS382 60
61 TS083 56.0980 50.5420 0.6863 0.7293 56.0980 51.2870 0.6863 0.7735 TS083 61
62 TS452 55.8940 47.6290 0.6752 0.5562 55.8940 50.2710 0.6752 0.7132 TS452 62
63 TS018 55.6910 47.2220 0.6641 0.5321 60.3660 51.4230 0.9200 0.7816 TS018 63
64 TS450 54.4720 45.7990 0.5973 0.4475 54.4720 45.7990 0.5973 0.4475 TS450 64
65 TS391 52.0330 44.4440 0.4638 0.3670 52.0330 44.4440 0.4638 0.3670 TS391 65
66 TS172 50.2030 39.2950 0.3636 0.0611 50.2030 42.7510 0.3636 0.2665 TS172 66
67 TS102 49.3900 44.2410 0.3191 0.3550 49.3900 46.4770 0.3191 0.4878 TS102 67
68 TS423 49.1870 43.9020 0.3080 0.3348 49.7970 44.4440 0.3414 0.3670 TS423 68
69 TS275 48.3740 46.2060 0.2635 0.4717 52.4390 49.8640 0.4860 0.6890 TS275 69
70 TS273 48.3740 46.2060 0.2635 0.4717 59.7560 56.9110 0.8866 1.1076 TS273 70
71 TS366 48.1710 44.9190 0.2524 0.3952 48.1710 44.9190 0.2524 0.3952 TS366 71
72 TS103 48.1710 41.8020 0.2524 0.2101 48.1710 42.6830 0.2524 0.2624 TS103 72
73 TS208 47.7640 46.2740 0.2301 0.4757 47.7640 46.2740 0.2301 0.4757 TS208 73
74 TS457 47.1540 44.1730 0.1967 0.3509 49.5930 45.2570 0.3302 0.4153 TS457 74
75 TS117 45.9350 41.4630 0.1300 0.1899 45.9350 41.4630 0.1300 0.1899 TS117 75
76 TS244 44.7150 39.1600 0.0632 0.0531 45.1220 40.3790 0.0855 0.1255 TS244 76
77 TS253 44.5120 42.6150 0.0521 0.2584 47.1540 44.1060 0.1967 0.3469 TS253 77
78 AL285 44.3090 40.6500 0.0410 0.1416 44.3090 40.9210 0.0410 0.1577 AL285 78
79 TS360 43.9020 39.7020 0.0187 0.0853 43.9020 39.7020 0.0187 0.0853 TS360 79
80 TS319 43.9020 34.8240 0.0187 -0.2045 48.7800 46.2060 0.2857 0.4717 TS319 80
81 TS173 43.9020 34.8240 0.0187 -0.2045 45.5280 42.4120 0.1077 0.2463 TS173 81
82 TS056 43.9020 34.8240 0.0187 -0.2045 45.5280 42.4120 0.1077 0.2463 TS056 82
83 TS301 43.6990 38.5500 0.0076 0.0169 43.6990 38.5500 0.0076 0.0169 TS301 83
84 AL396 42.8860 39.9050 -0.0369 0.0974 43.4960 41.4630 -0.0035 0.1899 AL396 84
85 TS316 42.8860 38.2790 -0.0369 0.0008 42.8860 38.2790 -0.0369 0.0008 TS316 85
86 TS307 41.2600 37.1950 -0.1259 -0.0636 46.7480 43.1570 0.1745 0.2906 TS307 86
87 TS186 41.0570 36.2470 -0.1371 -0.1199 41.4630 36.5850 -0.1148 -0.0998 TS186 87
88 TS165 40.8540 37.6020 -0.1482 -0.0394 66.2600 60.9760 1.2426 1.3491 TS165 88
89 TS214 40.6500 35.5010 -0.1593 -0.1642 43.2930 39.0920 -0.0147 0.0491 TS214 89
90 TS047 34.7560 31.6400 -0.4820 -0.3936 34.7560 31.6400 -0.4820 -0.3936 TS047 90
91 TS424 33.9430 25.3390 -0.5265 -0.7679 61.7890 54.9460 0.9979 0.9909 TS424 91
92 TS045 33.3330 31.1650 -0.5599 -0.4218 42.0730 33.0620 -0.0814 -0.3091 TS045 92
93 TS055 32.9270 26.5580 -0.5821 -0.6955 36.7890 29.8780 -0.3707 -0.4983 TS055 93
94 TS295 32.9270 26.4910 -0.5821 -0.6995 49.1870 45.6640 0.3080 0.4395 TS295 94
95 TS324 32.7240 26.1520 -0.5932 -0.7196 32.9270 26.4230 -0.5821 -0.7035 TS324 95
96 TS484 32.1140 27.5070 -0.6266 -0.6391 35.3660 29.8100 -0.4486 -0.5023 TS484 96
97 TS345 31.3010 27.7100 -0.6711 -0.6271 35.9760 32.4530 -0.4152 -0.3453 TS345 97
98 TS127 29.0650 25.0680 -0.7935 -0.7840 29.6750 26.4230 -0.7601 -0.7035 TS127 98
99 TS063 28.4550 24.4580 -0.8269 -0.8203 28.4550 24.4580 -0.8269 -0.8203 TS063 99
100 TS166 25.6100 22.7640 -0.9827 -0.9209 51.8290 47.0870 0.4526 0.5240 TS166 100
101 TS257 25.4070 21.3410 -0.9938 -1.0054 25.4070 21.3410 -0.9938 -1.0054 TS257 101
102 TS355 24.7970 22.2220 -1.0272 -0.9531 24.7970 22.2220 -1.0272 -0.9531 TS355 102
103 TS220 24.7970 22.2220 -1.0272 -0.9531 32.9270 26.9650 -0.5821 -0.6713 TS220 103
104 TS447 24.7970 22.2220 -1.0272 -0.9531 32.9270 26.9650 -0.5821 -0.6713 TS447 104
105 TS028 24.7970 19.2410 -1.0272 -1.1302 45.3250 41.9380 0.0966 0.2182 TS028 105
106 TS302 24.7970 19.2410 -1.0272 -1.1302 32.9270 26.9650 -0.5821 -0.6713 TS302 106
107 TS142 24.7970 19.2410 -1.0272 -1.1302 32.9270 26.9650 -0.5821 -0.6713 TS142 107
108 TS291 24.3900 20.4610 -1.0495 -1.0577 24.3900 21.7480 -1.0495 -0.9813 TS291 108
109 TS481 24.1870 22.2900 -1.0606 -0.9491 28.6590 26.7620 -0.8158 -0.6834 TS481 109
110 TS149 24.1870 17.2760 -1.0606 -1.2469 24.1870 17.2760 -1.0606 -1.2469 TS149 110
111 TS042 23.9840 21.5450 -1.0717 -0.9933 27.4390 23.6450 -0.8825 -0.8686 TS042 111
112 TS014 23.5770 17.9540 -1.0940 -1.2066 25.8130 19.8510 -0.9716 -1.0939 TS014 112
113 TS403 23.3740 22.1540 -1.1051 -0.9571 23.3740 22.1540 -1.1051 -0.9571 TS403 113
114 TS153 22.7640 20.0540 -1.1385 -1.0819 22.7640 20.0540 -1.1385 -1.0819 TS153 114
115 TS200 21.9510 18.9020 -1.1830 -1.1503 27.6420 23.4420 -0.8714 -0.8806 TS200 115
116 TS328 21.7480 18.9020 -1.1941 -1.1503 21.7480 18.9020 -1.1941 -1.1503 TS328 116
117 TS026 21.3410 17.5470 -1.2164 -1.2308 23.9840 21.2060 -1.0717 -1.0135 TS026 117
118 TS350 20.9350 18.9020 -1.2386 -1.1503 28.0490 25.8810 -0.8492 -0.7357 TS350 118
119 TS182 20.7320 16.6670 -1.2497 -1.2831 24.5930 21.4770 -1.0383 -0.9974 TS182 119
120 TS250 19.1060 16.2600 -1.3387 -1.3073 22.1540 18.5640 -1.1719 -1.1704 TS250 120
121 TS304 18.9020 14.0920 -1.3499 -1.4361 23.7800 19.4440 -1.0828 -1.1181 TS304 121
122 TS311 18.4960 14.0240 -1.3721 -1.4401 18.4960 16.0570 -1.3721 -1.3193 TS311 122
123 TS373 18.2930 18.0890 -1.3832 -1.1986 23.1710 18.9700 -1.1162 -1.1463 TS373 123
124 TS314 18.2930 15.6500 -1.3832 -1.3435 41.4630 39.1600 -0.1148 0.0531 TS314 124
125 TS444 18.0890 13.8890 -1.3944 -1.4481 18.0890 17.0050 -1.3944 -1.2630 TS444 125
126 TS248 17.8860 15.5830 -1.4055 -1.3475 17.8860 15.5830 -1.4055 -1.3475 TS248 126
127 TS084 17.8860 15.1760 -1.4055 -1.3717 21.9510 21.1380 -1.1830 -1.0175 TS084 127
128 TS278 17.8860 15.1760 -1.4055 -1.3717 17.8860 15.1760 -1.4055 -1.3717 TS278 128
129 TS336 17.6830 15.9210 -1.4166 -1.3274 23.7800 19.5800 -1.0828 -1.1100 TS336 129
130 RANDOM 17.47 14.95 -1.4283 -1.3851 17.47 14.95 -1.4283 -1.3851 RANDOM 130
131 TS206 17.2760 14.8370 -1.4389 -1.3918 17.2760 14.8370 -1.4389 -1.3918 TS206 131
132 TS229 17.2760 14.4990 -1.4389 -1.4119 17.2760 14.4990 -1.4389 -1.4119 TS229 132
133 TS409 17.0730 16.0570 -1.4500 -1.3193 49.7970 44.2410 0.3414 0.3550 TS409 133
134 TS264 17.0730 13.3470 -1.4500 -1.4803 23.5770 19.7150 -1.0940 -1.1020 TS264 134
135 TS289 16.0570 15.2440 -1.5056 -1.3676 16.0570 15.2440 -1.5056 -1.3676 TS289 135
136 TS420 14.2280 11.7890 -1.6058 -1.5729 14.2280 11.7890 -1.6058 -1.5729 TS420 136
137 TS471 14.2280 11.7890 -1.6058 -1.5729 14.2280 11.7890 -1.6058 -1.5729 TS471 137
138 TS333 13.6180 12.3980 -1.6391 -1.5367 16.2600 12.8730 -1.4945 -1.5085 TS333 138
139 TS029 12.8050 11.5850 -1.6836 -1.5850 26.8290 23.0350 -0.9159 -0.9048 TS029 139
140 TS436 12.8050 9.8240 -1.6836 -1.6896 12.8050 9.8240 -1.6836 -1.6896 TS436 140
141 TS476 12.3980 11.4500 -1.7059 -1.5930 16.6670 15.4470 -1.4722 -1.3556 TS476 141
142 TS171 12.3980 10.9080 -1.7059 -1.6252 12.3980 10.9080 -1.7059 -1.6252 TS171 142
143 TS009             -1.4283 -1.3851             -1.4283 -1.3851 TS009 143
144 TS020             -1.4283 -1.3851             -1.4283 -1.3851 TS020 144
145 TS035             -1.4283 -1.3851             -1.4283 -1.3851 TS035 145
146 TS039             -1.4283 -1.3851             -1.4283 -1.3851 TS039 146
147 TS044             -1.4283 -1.3851             -1.4283 -1.3851 TS044 147
148 TS061             -1.4283 -1.3851             -1.4283 -1.3851 TS061 148
149 TS074             -1.4283 -1.3851             -1.4283 -1.3851 TS074 149
150 TS086             -1.4283 -1.3851             -1.4283 -1.3851 TS086 150
151 TS105             -1.4283 -1.3851             -1.4283 -1.3851 TS105 151
152 TS140             -1.4283 -1.3851             -1.4283 -1.3851 TS140 152
153 TS150             -1.4283 -1.3851             -1.4283 -1.3851 TS150 153
154 TS152             -1.4283 -1.3851             -1.4283 -1.3851 TS152 154
155 TS154             -1.4283 -1.3851             -1.4283 -1.3851 TS154 155
156 TS160             -1.4283 -1.3851             -1.4283 -1.3851 TS160 156
157 TS170             -1.4283 -1.3851             -1.4283 -1.3851 TS170 157
158 TS178             -1.4283 -1.3851             -1.4283 -1.3851 TS178 158
159 TS180             -1.4283 -1.3851             -1.4283 -1.3851 TS180 159
160 TS184             -1.4283 -1.3851             -1.4283 -1.3851 TS184 160
161 TS189             -1.4283 -1.3851             -1.4283 -1.3851 TS189 161
162 TS192             -1.4283 -1.3851             -1.4283 -1.3851 TS192 162
163 TS199             -1.4283 -1.3851             -1.4283 -1.3851 TS199 163
164 TS228             -1.4283 -1.3851             -1.4283 -1.3851 TS228 164
165 TS254             -1.4283 -1.3851             -1.4283 -1.3851 TS254 165
166 TS261             -1.4283 -1.3851             -1.4283 -1.3851 TS261 166
167 TS263             -1.4283 -1.3851             -1.4283 -1.3851 TS263 167
168 TS269             -1.4283 -1.3851             -1.4283 -1.3851 TS269 168
169 TS279             -1.4283 -1.3851             -1.4283 -1.3851 TS279 169
170 TS282             -1.4283 -1.3851             -1.4283 -1.3851 TS282 170
171 TS322             -1.4283 -1.3851             -1.4283 -1.3851 TS322 171
172 TS330             -1.4283 -1.3851             -1.4283 -1.3851 TS330 172
173 TS331             -1.4283 -1.3851             -1.4283 -1.3851 TS331 173
174 TS347             -1.4283 -1.3851             -1.4283 -1.3851 TS347 174
175 TS358             -1.4283 -1.3851             -1.4283 -1.3851 TS358 175
176 TS362             -1.4283 -1.3851             -1.4283 -1.3851 TS362 176
177 TS433             -1.4283 -1.3851             -1.4283 -1.3851 TS433 177
178 TS439             -1.4283 -1.3851             -1.4283 -1.3851 TS439 178