T0552

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0552

BtR376 from unknown species

Target type: Server only

Target sequence:

>T0552 BtR376, unknown species, 122 residues
MNDDVDIQQSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSASTDQQTVDVYFQDSFGQLQQLTFSFNNDSSKEEE

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2l3b

Jmol of T0552 structure : 2l3b

PyMOL of T0552

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0552A1-13012-115

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Ig-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1pko_A | PyMOL of 1pko A, top pdb hits but with HHsearch prob 83.1

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No significant hit, but may related to Immunoglobulin V-set domain (PF07686).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0552 T0552 T0552 T0552
First score First Z-score Best score Best Z-score
1 TS104 63.9420 57.8530 1.4964 1.7890 63.9420 57.8530 1.4964 1.7890 TS104 1
2 TS037 62.7400 56.6510 1.4027 1.6805 62.7400 56.6510 1.4027 1.6805 TS037 2
3 TS361 62.7400 55.3690 1.4027 1.5648 62.7400 55.3690 1.4027 1.5648 TS361 3
4 TS060 62.2600 53.9260 1.3653 1.4346 62.2600 53.9260 1.3653 1.4346 TS060 4
5 TS088 62.2600 52.1630 1.3653 1.2755 62.2600 53.0450 1.3653 1.3551 TS088 5
6 TS407 62.0190 54.3270 1.3465 1.4708 62.2600 54.3270 1.3653 1.4708 TS407 6
7 TS470 62.0190 53.5260 1.3465 1.3985 62.2600 54.3270 1.3653 1.4708 TS470 7
8 TS419 62.0190 53.5260 1.3465 1.3985 62.0190 53.5260 1.3465 1.3985 TS419 8
9 TS428 62.0190 53.5260 1.3465 1.3985 62.2600 53.9260 1.3653 1.4346 TS428 9
10 TS490 62.0190 51.9230 1.3465 1.2538 62.2600 53.9260 1.3653 1.4346 TS490 10
11 TS380 61.5380 54.3270 1.3089 1.4708 62.0190 54.3270 1.3465 1.4708 TS380 11
12 TS113 61.5380 53.2050 1.3089 1.3695 62.7400 54.3270 1.4027 1.4708 TS113 12
13 TS253 61.2980 51.6830 1.2902 1.2321 64.4230 53.4460 1.5339 1.3913 TS253 13
14 TS395 60.3370 52.3240 1.2153 1.2900 65.3850 56.6510 1.6090 1.6805 TS395 14
15 TS208 58.6540 45.8330 1.0840 0.7042 60.8170 50.7210 1.2527 1.1453 TS208 15
16 TS094 57.2120 43.5900 0.9716 0.5017 62.2600 54.3270 1.3653 1.4708 TS094 16
17 TS236 57.2120 43.5900 0.9716 0.5017 57.2120 43.5900 0.9716 0.5017 TS236 17
18 TS114 56.9710 42.4680 0.9528 0.4005 56.9710 42.4680 0.9528 0.4005 TS114 18
19 TS429 56.7310 46.6350 0.9341 0.7765 56.7310 46.9550 0.9341 0.8054 TS429 19
20 TS452 56.2500 47.9170 0.8966 0.8922 56.4900 49.4390 0.9153 1.0296 TS452 20
21 TS409 55.5290 51.8430 0.8403 1.2466 55.5290 51.8430 0.8403 1.2466 TS409 21
22 TS119 55.0480 50.2400 0.8028 1.1019 55.0480 50.2400 0.8028 1.1019 TS119 22
23 TS215 55.0480 50.0800 0.8028 1.0875 55.0480 50.9620 0.8028 1.1671 TS215 23
24 TS080 55.0480 50.0800 0.8028 1.0875 55.0480 50.9620 0.8028 1.1671 TS080 24
25 TS002 54.8080 50.9620 0.7841 1.1671 54.8080 50.9620 0.7841 1.1671 TS002 25
26 TS302 54.5670 48.4780 0.7653 0.9429 55.7690 51.2820 0.8590 1.1959 TS302 26
27 TS142 54.5670 48.4780 0.7653 0.9429 55.7690 51.2820 0.8590 1.1959 TS142 27
28 TS391 54.5670 47.8370 0.7653 0.8850 54.5670 47.8370 0.7653 0.8850 TS391 28
29 TS273 53.6060 46.5540 0.6904 0.7692 53.6060 47.0350 0.6904 0.8126 TS273 29
30 TS001 53.6060 46.5540 0.6904 0.7692 53.6060 46.5540 0.6904 0.7692 TS001 30
31 TS296 53.6060 46.5540 0.6904 0.7692 53.6060 46.5540 0.6904 0.7692 TS296 31
32 TS275 53.3650 44.8720 0.6716 0.6174 53.3650 44.9520 0.6716 0.6246 TS275 32
33 TS056 52.8850 44.3910 0.6341 0.5740 54.8080 47.4360 0.7841 0.8488 TS056 33
34 TS173 52.6440 45.7530 0.6153 0.6969 53.1250 47.9970 0.6528 0.8995 TS173 34
35 TS307 51.9230 40.7050 0.5591 0.2413 51.9230 44.3910 0.5591 0.5740 TS307 35
36 TS214 51.6830 43.8300 0.5404 0.5234 52.1630 43.8300 0.5778 0.5234 TS214 36
37 TS026 51.6830 41.9070 0.5404 0.3498 51.6830 42.7880 0.5404 0.4293 TS026 37
38 TS102 51.4420 44.8720 0.5216 0.6174 52.8850 44.8720 0.6341 0.6174 TS102 38
39 TS457 50.9620 37.5800 0.4842 -0.0407 59.1350 52.7240 1.1215 1.3261 TS457 39
40 TS207 50.4810 42.4680 0.4466 0.4005 50.4810 42.4680 0.4466 0.4005 TS207 40
41 TS319 50.2400 43.3490 0.4279 0.4800 53.6060 46.5540 0.6904 0.7692 TS319 41
42 TS366 50.0000 41.6670 0.4091 0.3282 50.0000 44.9520 0.4091 0.6246 TS366 42
43 TS028 49.5190 42.4680 0.3716 0.4005 51.6830 42.8690 0.5404 0.4367 TS028 43
44 TS165 49.2790 42.7080 0.3529 0.4221 53.8460 48.7180 0.7091 0.9645 TS165 44
45 TS117 49.2790 41.1060 0.3529 0.2775 49.2790 42.1470 0.3529 0.3715 TS117 45
46 TS166 48.0770 33.7340 0.2592 -0.3878 53.3650 45.9940 0.6716 0.7187 TS166 46
47 TS449 47.5960 41.5060 0.2217 0.3136 47.5960 41.5060 0.2217 0.3136 TS449 47
48 TS453 47.5960 41.5060 0.2217 0.3136 47.5960 41.5060 0.2217 0.3136 TS453 48
49 TS346 47.5960 41.5060 0.2217 0.3136 47.5960 41.5060 0.2217 0.3136 TS346 49
50 TS063 47.1150 41.5060 0.1841 0.3136 50.4810 42.7880 0.4466 0.4293 TS063 50
51 TS248 46.8750 39.9840 0.1654 0.1763 47.3560 39.9840 0.2029 0.1763 TS248 51
52 AL285 46.8750 38.8620 0.1654 0.0750 49.2790 43.3490 0.3529 0.4800 AL285 52
53 TS291 44.9520 37.0990 0.0155 -0.0841 45.9130 37.5800 0.0904 -0.0407 TS291 53
54 TS174 43.5100 35.8170 -0.0970 -0.1998 43.5100 35.8170 -0.0970 -0.1998 TS174 54
55 TS276 41.8270 37.6600 -0.2283 -0.0335 55.5290 47.6760 0.8403 0.8705 TS276 55
56 TS286 41.8270 37.6600 -0.2283 -0.0335 55.5290 47.6760 0.8403 0.8705 TS286 56
57 TS103 41.8270 33.6540 -0.2283 -0.3950 46.3940 39.5030 0.1279 0.1329 TS103 57
58 TS218 40.8650 35.8970 -0.3033 -0.1926 41.3460 36.8590 -0.2658 -0.1058 TS218 58
59 TS345 40.6250 34.7760 -0.3220 -0.2938 57.2120 49.0380 0.9716 0.9934 TS345 59
60 TS077 40.3850 36.8590 -0.3407 -0.1058 55.5290 46.5540 0.8403 0.7692 TS077 60
61 TS435 40.3850 36.8590 -0.3407 -0.1058 41.8270 36.8590 -0.2283 -0.1058 TS435 61
62 TS418 39.9040 29.3270 -0.3782 -0.7855 43.7500 32.7720 -0.0783 -0.4746 TS418 62
63 TS321 37.9810 33.1730 -0.5282 -0.4384 44.2310 33.1730 -0.0408 -0.4384 TS321 63
64 TS127 37.5000 32.0510 -0.5657 -0.5397 50.0000 44.8720 0.4091 0.6174 TS127 64
65 TS213 36.7790 31.0100 -0.6219 -0.6337 37.5000 33.3330 -0.5657 -0.4240 TS213 65
66 TS220 36.5380 31.0100 -0.6407 -0.6337 55.7690 51.2820 0.8590 1.1959 TS220 66
67 TS447 36.5380 31.0100 -0.6407 -0.6337 55.7690 51.2820 0.8590 1.1959 TS447 67
68 TS420 34.8560 31.3300 -0.7719 -0.6048 34.8560 31.3300 -0.7719 -0.6048 TS420 68
69 TS471 34.8560 31.3300 -0.7719 -0.6048 34.8560 31.3300 -0.7719 -0.6048 TS471 69
70 TS018 33.8940 30.5290 -0.8469 -0.6771 33.8940 30.5290 -0.8469 -0.6771 TS018 70
71 TS481 31.9710 30.2080 -0.9969 -0.7060 31.9710 30.2080 -0.9969 -0.7060 TS481 71
72 TS047 31.2500 26.7630 -1.0531 -1.0170 31.2500 26.7630 -1.0531 -1.0170 TS047 72
73 TS304 29.5670 26.6830 -1.1844 -1.0242 49.0380 45.1920 0.3341 0.6463 TS304 73
74 TS244 28.8460 25.4810 -1.2406 -1.1327 45.4330 38.7020 0.0530 0.0606 TS244 74
75 TS055 27.1630 26.6830 -1.3719 -1.0242 37.5000 32.6920 -0.5657 -0.4818 TS055 75
76 TS355 26.4420 22.9170 -1.4281 -1.3641 29.5670 28.0450 -1.1844 -0.9013 TS355 76
77 TS350 26.4420 22.4360 -1.4281 -1.4075 28.3650 26.4420 -1.2781 -1.0459 TS350 77
78 TS171 24.5190 19.3910 -1.5781 -1.6823 25.7210 21.6350 -1.4843 -1.4798 TS171 78
79 TS476 24.0380 19.0710 -1.6156 -1.7112 28.3650 23.1570 -1.2781 -1.3424 TS476 79
80 TS328 22.3560 18.8300 -1.7467 -1.7329 22.3560 18.8300 -1.7467 -1.7329 TS328 80
81 TS257 22.3560 15.7850 -1.7467 -2.0077 27.4040 22.1150 -1.3531 -1.4364 TS257 81
82 TS014 21.3940 18.6700 -1.8218 -1.7474 26.9230 24.1990 -1.3906 -1.2484 TS014 82
83 TS245 18.7500 14.3430 -2.0280 -2.1379 18.7500 14.3430 -2.0280 -2.1379 TS245 83
84 RANDOM 18.72 16.08 -2.0303 -1.9811 18.72 16.08 -2.0303 -1.9811 RANDOM 84
85 TS229 17.7880 16.6670 -2.1030 -1.9281 20.6730 18.1890 -1.8780 -1.7908 TS229 85
86 TS264 17.0670 14.9840 -2.1592 -2.0800 17.0670 16.2660 -2.1592 -1.9643 TS264 86
87 TS314 16.3460 13.9420 -2.2154 -2.1741 38.7020 31.4100 -0.4720 -0.5976 TS314 87
88 TS129 15.8650 13.8620 -2.2530 -2.1813 15.8650 13.8620 -2.2530 -2.1813 TS129 88
89 TS250 14.6630 10.3370 -2.3467 -2.4994 14.6630 12.0990 -2.3467 -2.3404 TS250 89
90 AL396             -2.0303 -1.9811             -0.3407 -0.5107 AL396 90
91 TS009             -2.0303 -1.9811             -2.0303 -1.9811 TS009 91
92 TS016             -2.0303 -1.9811             -2.0303 -1.9811 TS016 92
93 TS020             -2.0303 -1.9811             -2.0303 -1.9811 TS020 93
94 TS029             -2.0303 -1.9811             -2.0303 -1.9811 TS029 94
95 TS033             -2.0303 -1.9811             -2.0303 -1.9811 TS033 95
96 TS035             -2.0303 -1.9811             -2.0303 -1.9811 TS035 96
97 TS039             -2.0303 -1.9811             -2.0303 -1.9811 TS039 97
98 TS042             -2.0303 -1.9811             -2.0303 -1.9811 TS042 98
99 TS044             -2.0303 -1.9811             -2.0303 -1.9811 TS044 99
100 TS045             -2.0303 -1.9811             -2.0303 -1.9811 TS045 100
101 TS061             -2.0303 -1.9811             -2.0303 -1.9811 TS061 101
102 TS074             -2.0303 -1.9811             -2.0303 -1.9811 TS074 102
103 TS075             -2.0303 -1.9811             -2.0303 -1.9811 TS075 103
104 TS083             -2.0303 -1.9811             -2.0303 -1.9811 TS083 104
105 TS084             -2.0303 -1.9811             -2.0303 -1.9811 TS084 105
106 TS086             -2.0303 -1.9811             -2.0303 -1.9811 TS086 106
107 TS096             -2.0303 -1.9811             -2.0303 -1.9811 TS096 107
108 TS105             -2.0303 -1.9811             -2.0303 -1.9811 TS105 108
109 TS110             -2.0303 -1.9811             -2.0303 -1.9811 TS110 109
110 TS140             -2.0303 -1.9811             -2.0303 -1.9811 TS140 110
111 TS147             -2.0303 -1.9811             -2.0303 -1.9811 TS147 111
112 TS149             -2.0303 -1.9811             -2.0303 -1.9811 TS149 112
113 TS150             -2.0303 -1.9811             -2.0303 -1.9811 TS150 113
114 TS152             -2.0303 -1.9811             -2.0303 -1.9811 TS152 114
115 TS153             -2.0303 -1.9811             -2.0303 -1.9811 TS153 115
116 TS154             -2.0303 -1.9811             -2.0303 -1.9811 TS154 116
117 TS160             -2.0303 -1.9811             -2.0303 -1.9811 TS160 117
118 TS170             -2.0303 -1.9811             -2.0303 -1.9811 TS170 118
119 TS172             -2.0303 -1.9811             -2.0303 -1.9811 TS172 119
120 TS178             -2.0303 -1.9811             -2.0303 -1.9811 TS178 120
121 TS180             -2.0303 -1.9811             -2.0303 -1.9811 TS180 121
122 TS182             -2.0303 -1.9811             -2.0303 -1.9811 TS182 122
123 TS184             -2.0303 -1.9811             -2.0303 -1.9811 TS184 123
124 TS186             -2.0303 -1.9811             -2.0303 -1.9811 TS186 124
125 TS189             -2.0303 -1.9811             -2.0303 -1.9811 TS189 125
126 TS192             -2.0303 -1.9811             -2.0303 -1.9811 TS192 126
127 TS199             -2.0303 -1.9811             -2.0303 -1.9811 TS199 127
128 TS200             -2.0303 -1.9811             -2.0303 -1.9811 TS200 128
129 TS206             -2.0303 -1.9811             -2.0303 -1.9811 TS206 129
130 TS228             -2.0303 -1.9811             -2.0303 -1.9811 TS228 130
131 TS240             -2.0303 -1.9811             -2.0303 -1.9811 TS240 131
132 TS242             -2.0303 -1.9811             -2.0303 -1.9811 TS242 132
133 TS254             -2.0303 -1.9811             -2.0303 -1.9811 TS254 133
134 TS261             -2.0303 -1.9811             -2.0303 -1.9811 TS261 134
135 TS263             -2.0303 -1.9811             -2.0303 -1.9811 TS263 135
136 TS269             -2.0303 -1.9811             -2.0303 -1.9811 TS269 136
137 TS278             -2.0303 -1.9811             -2.0303 -1.9811 TS278 137
138 TS279             -2.0303 -1.9811             -2.0303 -1.9811 TS279 138
139 TS282             -2.0303 -1.9811             -2.0303 -1.9811 TS282 139
140 TS289             -2.0303 -1.9811             -1.1656 -1.2629 TS289 140
141 TS295             -2.0303 -1.9811             -2.0303 -1.9811 TS295 141
142 TS297             -2.0303 -1.9811             -2.0303 -1.9811 TS297 142
143 TS299             -2.0303 -1.9811             -2.0303 -1.9811 TS299 143
144 TS300             -2.0303 -1.9811             -2.0303 -1.9811 TS300 144
145 TS301             -2.0303 -1.9811             -2.0303 -1.9811 TS301 145
146 TS311             -2.0303 -1.9811             -2.0303 -1.9811 TS311 146
147 TS316             -2.0303 -1.9811             -2.0303 -1.9811 TS316 147
148 TS322             -2.0303 -1.9811             -2.0303 -1.9811 TS322 148
149 TS324             -2.0303 -1.9811             -2.0303 -1.9811 TS324 149
150 TS330             -2.0303 -1.9811             -2.0303 -1.9811 TS330 150
151 TS331             -2.0303 -1.9811             -2.0303 -1.9811 TS331 151
152 TS333             -2.0303 -1.9811             -2.0303 -1.9811 TS333 152
153 TS336             -2.0303 -1.9811             -2.0303 -1.9811 TS336 153
154 TS347             -2.0303 -1.9811             -2.0303 -1.9811 TS347 154
155 TS353             -2.0303 -1.9811             -2.0303 -1.9811 TS353 155
156 TS358             -2.0303 -1.9811             -2.0303 -1.9811 TS358 156
157 TS360             -2.0303 -1.9811             -2.0303 -1.9811 TS360 157
158 TS362             -2.0303 -1.9811             -2.0303 -1.9811 TS362 158
159 TS365             -2.0303 -1.9811             -2.0303 -1.9811 TS365 159
160 TS373             -2.0303 -1.9811             -2.0303 -1.9811 TS373 160
161 TS382             -2.0303 -1.9811             -2.0303 -1.9811 TS382 161
162 TS386             -2.0303 -1.9811             -2.0303 -1.9811 TS386 162
163 TS399             -2.0303 -1.9811             -2.0303 -1.9811 TS399 163
164 TS400             -2.0303 -1.9811             -2.0303 -1.9811 TS400 164
165 TS402             -2.0303 -1.9811             -2.0303 -1.9811 TS402 165
166 TS403             -2.0303 -1.9811             -2.0303 -1.9811 TS403 166
167 TS408             -2.0303 -1.9811             -2.0303 -1.9811 TS408 167
168 TS423             -2.0303 -1.9811             -2.0303 -1.9811 TS423 168
169 TS424             -2.0303 -1.9811             -2.0303 -1.9811 TS424 169
170 TS433             -2.0303 -1.9811             -2.0303 -1.9811 TS433 170
171 TS436             -2.0303 -1.9811             -2.0303 -1.9811 TS436 171
172 TS439             -2.0303 -1.9811             -2.0303 -1.9811 TS439 172
173 TS444             -2.0303 -1.9811             -2.0303 -1.9811 TS444 173
174 TS450             -2.0303 -1.9811             -2.0303 -1.9811 TS450 174
175 TS458             -2.0303 -1.9811             -2.0303 -1.9811 TS458 175
176 TS461             -2.0303 -1.9811             -2.0303 -1.9811 TS461 176
177 TS477             -2.0303 -1.9811             -2.0303 -1.9811 TS477 177
178 TS484             -2.0303 -1.9811             -2.0303 -1.9811 TS484 178