T0556 (canceled by organizer)

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0556

HR4435B from unknown species

Target type: Human/Server

Target sequence:

>T0556 HR4435B, unknown species, 73 residues
MLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMM

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: canceled

Jmol of T0556 structure : canceled

PyMOL of T0556

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0556A1-831-68

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

This target is possibely a Antitoxin HIGA, helix-turn-helix. It may belong to lambda repressor-like DNA-binding domains

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2ict_A | PyMOL of 2ict A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

It may be a Bacteriophage lambda Cro repressor (PF09048), or it is just a Helix-turn-Helix domain (Helix-turn-helix domain ().

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0556 T0556 T0556 T0556
First score First Z-score Best score Best Z-score
1 TS300 68.9390 62.6260 1.5076 1.8250 68.9390 62.6260 1.5076 1.8250 TS300 1
2 TS113 68.5610 63.2580 1.4743 1.8887 68.5610 63.2580 1.4743 1.8887 TS113 2
3 TS490 68.5610 58.7120 1.4743 1.4306 68.9390 60.6060 1.5076 1.6215 TS490 3
4 TS297 67.8030 59.7220 1.4075 1.5324 67.8030 59.7220 1.4075 1.5324 TS297 4
5 TS366 67.0450 63.2580 1.3406 1.8887 67.0450 63.2580 1.3406 1.8887 TS366 5
6 TS418 67.0450 57.7020 1.3406 1.3288 67.0450 58.2070 1.3406 1.3797 TS418 6
7 TS380 67.0450 57.7020 1.3406 1.3288 67.4240 59.5960 1.3740 1.5197 TS380 7
8 TS096 66.2880 58.7120 1.2739 1.4306 67.8030 62.7530 1.4075 1.8378 TS096 8
9 TS104 65.9090 59.3430 1.2405 1.4942 65.9090 59.3430 1.2405 1.4942 TS104 9
10 TS033 65.5300 62.5000 1.2071 1.8123 65.5300 62.5000 1.2071 1.8123 TS033 10
11 TS147 65.5300 60.9850 1.2071 1.6596 65.5300 60.9850 1.2071 1.6596 TS147 11
12 TS253 65.5300 58.2070 1.2071 1.3797 65.9090 58.3330 1.2405 1.3924 TS253 12
13 TS047 65.5300 54.9240 1.2071 1.0489 65.5300 54.9240 1.2071 1.0489 TS047 13
14 TS402 65.1520 59.3430 1.1738 1.4942 67.4240 61.1110 1.3740 1.6723 TS402 14
15 TS240 64.7730 57.9550 1.1404 1.3543 64.7730 57.9550 1.1404 1.3543 TS240 15
16 TS428 64.7730 57.9550 1.1404 1.3543 68.9390 62.6260 1.5076 1.8250 TS428 16
17 TS028 64.3940 59.8480 1.1070 1.5451 64.3940 59.8480 1.1070 1.5451 TS028 17
18 TS361 64.3940 57.3230 1.1070 1.2907 64.3940 58.7120 1.1070 1.4306 TS361 18
19 TS365 64.3940 56.3130 1.1070 1.1889 65.1520 58.0810 1.1738 1.3670 TS365 19
20 TS324 64.3940 46.2120 1.1070 0.1711 64.3940 46.2120 1.1070 0.1711 TS324 20
21 TS114 63.6360 54.2930 1.0402 0.9853 63.6360 54.2930 1.0402 0.9853 TS114 21
22 TS457 63.2580 58.7120 1.0069 1.4306 67.4240 58.7120 1.3740 1.4306 TS457 22
23 TS275 63.2580 55.1770 1.0069 1.0744 63.2580 55.1770 1.0069 1.0744 TS275 23
24 TS291 63.2580 53.7880 1.0069 0.9345 63.6360 55.3030 1.0402 1.0871 TS291 24
25 TS002 62.8790 55.8080 0.9734 1.1380 62.8790 58.3330 0.9734 1.3924 TS002 25
26 TS360 62.8790 53.2830 0.9734 0.8836 66.6670 61.1110 1.3073 1.6723 TS360 26
27 TS470 62.5000 51.8940 0.9400 0.7436 68.9390 62.6260 1.5076 1.8250 TS470 27
28 TS088 62.5000 50.8840 0.9400 0.6418 67.4240 64.1410 1.3740 1.9777 TS088 28
29 TS174 62.1210 51.7680 0.9066 0.7309 62.1210 51.7680 0.9066 0.7309 TS174 29
30 TS035 62.1210 51.5150 0.9066 0.7054 62.1210 51.5150 0.9066 0.7054 TS035 30
31 TS395 61.7420 55.6820 0.8732 1.1253 61.7420 55.9340 0.8732 1.1507 TS395 31
32 TS242 61.7420 53.1570 0.8732 0.8709 63.6360 53.1570 1.0402 0.8709 TS242 32
33 TS452 61.7420 53.1570 0.8732 0.8709 63.6360 53.1570 1.0402 0.8709 TS452 33
34 TS391 61.7420 49.8740 0.8732 0.5401 61.7420 49.8740 0.8732 0.5401 TS391 34
35 TS386 61.7420 49.3690 0.8732 0.4892 61.7420 54.9240 0.8732 1.0489 TS386 35
36 TS458 61.3640 48.4850 0.8399 0.4001 62.8790 56.8180 0.9734 1.2398 TS458 36
37 TS207 60.9850 54.4190 0.8065 0.9980 62.8790 57.5760 0.9734 1.3161 TS207 37
38 TS192 60.9850 53.1570 0.8065 0.8709 60.9850 53.1570 0.8065 0.8709 TS192 38
39 TS319 60.9850 51.8940 0.8065 0.7436 60.9850 54.1670 0.8065 0.9726 TS319 39
40 TS056 60.9850 51.8940 0.8065 0.7436 62.5000 56.4390 0.9400 1.2016 TS056 40
41 TS273 60.9850 51.8940 0.8065 0.7436 60.9850 51.8940 0.8065 0.7436 TS273 41
42 TS075 60.9850 50.6310 0.8065 0.6163 62.1210 53.2830 0.9066 0.8836 TS075 42
43 TS345 60.9850 46.3380 0.8065 0.1838 64.3940 58.7120 1.1070 1.4306 TS345 43
44 TS408 60.6060 56.9440 0.7731 1.2525 63.2580 56.9440 1.0069 1.2525 TS408 44
45 TS117 60.6060 53.7880 0.7731 0.9345 66.6670 57.8280 1.3073 1.3415 TS117 45
46 TS102 60.6060 53.0300 0.7731 0.8581 61.3640 53.0300 0.8399 0.8581 TS102 46
47 TS399 60.6060 53.0300 0.7731 0.8581 67.0450 57.9550 1.3406 1.3543 TS399 47
48 TS208 60.6060 53.0300 0.7731 0.8581 61.7420 53.0300 0.8732 0.8581 TS208 48
49 TS166 60.2270 51.3890 0.7397 0.6927 60.6060 51.3890 0.7731 0.6927 TS166 49
50 TS172 60.2270 43.8130 0.7397 -0.0707 71.9700 57.0710 1.7747 1.2653 TS172 50
51 TS060 59.8480 51.0100 0.7063 0.6545 67.0450 63.2580 1.3406 1.8887 TS060 51
52 TS304 59.4700 52.3990 0.6730 0.7945 59.4700 52.3990 0.6730 0.7945 TS304 52
53 TS407 59.4700 51.3890 0.6730 0.6927 67.0450 57.7020 1.3406 1.3288 TS407 53
54 TS276 59.4700 49.3690 0.6730 0.4892 68.1820 62.3740 1.4409 1.7996 TS276 54
55 TS077 59.4700 49.3690 0.6730 0.4892 68.1820 62.3740 1.4409 1.7996 TS077 55
56 TS286 59.4700 49.3690 0.6730 0.4892 68.1820 62.3740 1.4409 1.7996 TS286 56
57 TS215 58.7120 54.6720 0.6062 1.0235 58.7120 54.6720 0.6062 1.0235 TS215 57
58 TS080 58.7120 54.6720 0.6062 1.0235 64.7730 60.4800 1.1404 1.6088 TS080 58
59 TS103 58.7120 51.1360 0.6062 0.6672 58.7120 53.9140 0.6062 0.9472 TS103 59
60 TS423 58.7120 48.6110 0.6062 0.4128 59.4700 49.4950 0.6730 0.5019 TS423 60
61 TS127 58.7120 47.8540 0.6062 0.3365 58.7120 50.1260 0.6062 0.5655 TS127 61
62 TS353 58.3330 50.5050 0.5728 0.6036 64.7730 57.9550 1.1404 1.3543 TS353 62
63 TS307 58.3330 44.4440 0.5728 -0.0071 59.4700 55.1770 0.6730 1.0744 TS307 63
64 TS037 57.9550 52.3990 0.5394 0.7945 67.0450 62.2470 1.3406 1.7868 TS037 64
65 TS094 57.9550 50.1260 0.5394 0.5655 62.5000 51.8940 0.9400 0.7436 TS094 65
66 TS213 57.9550 49.8740 0.5394 0.5401 60.6060 55.5560 0.7731 1.1126 TS213 66
67 TS419 57.9550 46.3380 0.5394 0.1838 64.7730 57.9550 1.1404 1.3543 TS419 67
68 TS347 57.9550 46.3380 0.5394 0.1838 65.9090 56.5660 1.2405 1.2144 TS347 68
69 TS358 57.9550 45.8330 0.5394 0.1329 65.9090 56.5660 1.2405 1.2144 TS358 69
70 TS173 57.5760 49.4950 0.5060 0.5019 57.5760 49.4950 0.5060 0.5019 TS173 70
71 TS429 57.5760 48.2320 0.5060 0.3746 58.7120 52.5250 0.6062 0.8072 TS429 71
72 TS484 57.5760 43.9390 0.5060 -0.0580 57.5760 46.0860 0.5060 0.1584 TS484 72
73 TS316 57.1970 48.6110 0.4726 0.4128 65.1520 52.7780 1.1738 0.8327 TS316 73
74 TS400 56.8180 49.2420 0.4392 0.4764 59.8480 49.2420 0.7063 0.4764 TS400 74
75 TS424 56.4390 45.8330 0.4058 0.1329 65.5300 55.1770 1.2071 1.0744 TS424 75
76 TS165 55.6820 46.0860 0.3391 0.1584 57.1970 55.9340 0.4726 1.1507 TS165 76
77 TS218 54.9240 46.3380 0.2723 0.1838 54.9240 46.3380 0.2723 0.1838 TS218 77
78 TS302 54.9240 45.3280 0.2723 0.0820 65.5300 60.4800 1.2071 1.6088 TS302 78
79 TS142 54.9240 45.3280 0.2723 0.0820 65.5300 60.4800 1.2071 1.6088 TS142 79
80 TS220 54.9240 45.3280 0.2723 0.0820 62.5000 57.1970 0.9400 1.2780 TS220 80
81 TS447 54.9240 45.3280 0.2723 0.0820 62.5000 57.1970 0.9400 1.2780 TS447 81
82 TS149 54.9240 44.0660 0.2723 -0.0452 54.9240 44.0660 0.2723 -0.0452 TS149 82
83 TS248 54.5450 43.6870 0.2389 -0.0834 54.5450 43.6870 0.2389 -0.0834 TS248 83
84 TS311 54.1670 42.5510 0.2056 -0.1978 54.1670 42.5510 0.2056 -0.1978 TS311 84
85 TS170 53.7880 38.2580 0.1722 -0.6304 56.8180 43.0560 0.4392 -0.1469 TS170 85
86 TS119 51.8940 48.6110 0.0052 0.4128 61.3640 50.5050 0.8399 0.6036 TS119 86
87 TS296 51.8940 46.8430 0.0052 0.2347 55.6820 54.1670 0.3391 0.9726 TS296 87
88 TS129 51.8940 42.8030 0.0052 -0.1724 52.6520 45.0760 0.0720 0.0566 TS129 88
89 TS244 51.5150 44.9490 -0.0282 0.0438 55.6820 48.3590 0.3391 0.3874 TS244 89
90 TS409 51.5150 44.1920 -0.0282 -0.0325 59.8480 50.3790 0.7063 0.5910 TS409 90
91 TS481 51.1360 42.0450 -0.0616 -0.2488 59.8480 47.8540 0.7063 0.3365 TS481 91
92 TS257 50.3790 36.4900 -0.1283 -0.8086 65.5300 54.6720 1.2071 1.0235 TS257 92
93 TS295 50.0000 40.1520 -0.1617 -0.4396 56.4390 52.1460 0.4058 0.7690 TS295 93
94 TS236 49.6210 39.7730 -0.1951 -0.4777 49.6210 39.7730 -0.1951 -0.4777 TS236 94
95 TS042 49.6210 36.9950 -0.1951 -0.7577 65.1520 52.7780 1.1738 0.8327 TS042 95
96 TS001 48.8640 41.5400 -0.2619 -0.2997 48.8640 41.5400 -0.2619 -0.2997 TS001 96
97 TS301 48.4850 46.2120 -0.2953 0.1711 55.6820 53.9140 0.3391 0.9472 TS301 97
98 TS029 48.1060 43.5610 -0.3287 -0.0961 50.0000 43.5610 -0.1617 -0.0961 TS029 98
99 TS299 48.1060 41.0350 -0.3287 -0.3506 54.5450 41.0350 0.2389 -0.3506 TS299 99
100 TS018 47.3480 42.2980 -0.3955 -0.2233 54.5450 47.7270 0.2389 0.3237 TS018 100
101 TS350 47.3480 41.2880 -0.3955 -0.3251 54.1670 46.4650 0.2056 0.1966 TS350 101
102 TS245 47.3480 40.0250 -0.3955 -0.4524 47.3480 40.0250 -0.3955 -0.4524 TS245 102
103 TS435 47.3480 37.2470 -0.3955 -0.7323 65.5300 52.1460 1.2071 0.7690 TS435 103
104 TS420 45.4550 43.4340 -0.5623 -0.1089 45.4550 43.4340 -0.5623 -0.1089 TS420 104
105 TS471 45.4550 43.4340 -0.5623 -0.1089 45.4550 43.4340 -0.5623 -0.1089 TS471 105
106 TS449 45.4550 42.6770 -0.5623 -0.1851 45.4550 42.6770 -0.5623 -0.1851 TS449 106
107 TS453 45.4550 42.6770 -0.5623 -0.1851 45.4550 42.6770 -0.5623 -0.1851 TS453 107
108 TS346 45.4550 42.6770 -0.5623 -0.1851 45.4550 42.6770 -0.5623 -0.1851 TS346 108
109 TS026 45.0760 41.2880 -0.5957 -0.3251 55.6820 45.8330 0.3391 0.1329 TS026 109
110 TS333 44.6970 36.1110 -0.6291 -0.8467 44.6970 36.1110 -0.6291 -0.8467 TS333 110
111 TS382 44.3180 39.2680 -0.6625 -0.5286 65.9090 61.1110 1.2405 1.6723 TS382 111
112 TS321 44.3180 38.5100 -0.6625 -0.6050 56.4390 43.3080 0.4058 -0.1215 TS321 112
113 TS373 43.9390 39.8990 -0.6959 -0.4650 43.9390 39.8990 -0.6959 -0.4650 TS373 113
114 TS278 43.5610 36.4900 -0.7293 -0.8086 43.5610 36.4900 -0.7293 -0.8086 TS278 114
115 TS450 42.4240 33.5860 -0.8295 -1.1012 42.4240 33.5860 -0.8295 -1.1012 TS450 115
116 TS061 41.6670 33.7120 -0.8962 -1.0885 41.6670 33.7120 -0.8962 -1.0885 TS061 116
117 TS322 41.2880 35.9850 -0.9296 -0.8594 41.6670 40.1520 -0.8962 -0.4396 TS322 117
118 TS140 40.1520 36.1110 -1.0297 -0.8467 42.8030 39.5200 -0.7961 -0.5032 TS140 118
119 TS171 40.1520 33.0810 -1.0297 -1.1521 40.1520 33.0810 -1.0297 -1.1521 TS171 119
120 TS084 39.0150 32.1970 -1.1300 -1.2411 46.5910 38.7630 -0.4622 -0.5795 TS084 120
121 AL285 38.6360 36.6160 -1.1634 -0.7959 40.1520 38.6360 -1.0297 -0.5923 AL285 121
122 TS055 38.2580 33.5860 -1.1967 -1.1012 56.0610 47.4750 0.3725 0.2983 TS055 122
123 TS433 37.5000 32.1970 -1.2635 -1.2411 40.9090 33.5860 -0.9630 -1.1012 TS433 123
124 TS331 37.5000 32.1970 -1.2635 -1.2411 40.9090 33.5860 -0.9630 -1.1012 TS331 124
125 TS477 36.7420 29.9240 -1.3303 -1.4702 47.7270 42.2980 -0.3621 -0.2233 TS477 125
126 TS355 36.3640 31.5660 -1.3636 -1.3047 48.4850 41.4140 -0.2953 -0.3124 TS355 126
127 TS020 36.3640 31.0610 -1.3636 -1.3556 39.3940 33.7120 -1.0965 -1.0885 TS020 127
128 TS063 35.9850 34.4700 -1.3970 -1.0121 35.9850 34.4700 -1.3970 -1.0121 TS063 128
129 TS200 35.2270 32.4490 -1.4638 -1.2157 41.2880 38.5100 -0.9296 -0.6050 TS200 129
130 TS289 33.7120 29.9240 -1.5974 -1.4702 33.7120 29.9240 -1.5974 -1.4702 TS289 130
131 TS328 33.7120 29.4190 -1.5974 -1.5211 33.7120 29.4190 -1.5974 -1.5211 TS328 131
132 TS182 33.3330 33.3330 -1.6308 -1.1267 34.0910 33.3330 -1.5640 -1.1267 TS182 132
133 TS229 32.9550 30.4290 -1.6641 -1.4193 40.1520 36.2370 -1.0297 -0.8340 TS229 133
134 TS039 32.9550 30.1770 -1.6641 -1.4447 43.1820 37.8790 -0.7627 -0.6686 TS039 134
135 TS086 32.9550 30.1770 -1.6641 -1.4447 43.1820 37.8790 -0.7627 -0.6686 TS086 135
136 TS186 32.5760 30.9340 -1.6975 -1.3684 32.9550 30.9340 -1.6641 -1.3684 TS186 136
137 TS214 32.5760 30.4290 -1.6975 -1.4193 33.3330 30.4290 -1.6308 -1.4193 TS214 137
138 TS403 32.5760 29.7980 -1.6975 -1.4829 32.5760 29.7980 -1.6975 -1.4829 TS403 138
139 TS153 32.1970 29.1670 -1.7309 -1.5464 32.1970 29.1670 -1.7309 -1.5464 TS153 139
140 TS083 31.8180 26.5150 -1.7643 -1.8137 43.1820 37.1210 -0.7627 -0.7450 TS083 140
141 AL396 31.4390 28.4090 -1.7977 -1.6228 58.7120 50.6310 0.6062 0.6163 AL396 141
142 TS461 31.4390 23.8640 -1.7977 -2.0808 36.3640 30.8080 -1.3636 -1.3811 TS461 142
143 TS444 31.4390 23.7370 -1.7977 -2.0936 32.9550 27.1460 -1.6641 -1.7501 TS444 143
144 TS269 31.0610 30.1770 -1.8310 -1.4447 37.8790 31.4390 -1.2301 -1.3175 TS269 144
145 TS152 31.0610 30.1770 -1.8310 -1.4447 37.8790 31.4390 -1.2301 -1.3175 TS152 145
146 RANDOM 30.70 26.31 -1.8628 -1.8343 30.70 26.31 -1.8628 -1.8343 RANDOM 146
147 TS045 30.6820 27.5250 -1.8644 -1.7119 30.6820 27.5250 -1.8644 -1.7119 TS045 147
148 TS206 29.5450 26.2630 -1.9646 -1.8391 29.5450 26.2630 -1.9646 -1.8391 TS206 148
149 TS476 26.8940 21.5910 -2.1983 -2.3098 26.8940 21.5910 -2.1983 -2.3098 TS476 149
150 TS436 26.1360 21.5910 -2.2651 -2.3098 26.1360 21.5910 -2.2651 -2.3098 TS436 150
151 TS264 25.7580 24.8740 -2.2984 -1.9790 34.4700 31.6920 -1.5306 -1.2920 TS264 151
152 TS250 25.7580 20.7070 -2.2984 -2.3989 25.7580 20.7070 -2.2984 -2.3989 TS250 152
153 TS279 23.1060 22.6010 -2.5322 -2.2081 34.0910 32.1970 -1.5640 -1.2411 TS279 153
154 TS009             -1.8628 -1.8343             -1.8628 -1.8343 TS009 154
155 TS014             -1.8628 -1.8343             -1.8628 -1.8343 TS014 155
156 TS016             -1.8628 -1.8343             -1.8628 -1.8343 TS016 156
157 TS044             -1.8628 -1.8343             -1.8628 -1.8343 TS044 157
158 TS074             -1.8628 -1.8343             -1.8628 -1.8343 TS074 158
159 TS105             -1.8628 -1.8343             -1.8628 -1.8343 TS105 159
160 TS110             -1.8628 -1.8343             -1.8628 -1.8343 TS110 160
161 TS150             -1.8628 -1.8343             -1.8628 -1.8343 TS150 161
162 TS154             -1.8628 -1.8343             -1.8628 -1.8343 TS154 162
163 TS160             -1.8628 -1.8343             -1.8628 -1.8343 TS160 163
164 TS178             -1.8628 -1.8343             -1.8628 -1.8343 TS178 164
165 TS180             -1.8628 -1.8343             -1.8628 -1.8343 TS180 165
166 TS184             -1.8628 -1.8343             -1.8628 -1.8343 TS184 166
167 TS189             -1.8628 -1.8343             -1.8628 -1.8343 TS189 167
168 TS199             -1.8628 -1.8343             -1.8628 -1.8343 TS199 168
169 TS228             -1.8628 -1.8343             -1.8628 -1.8343 TS228 169
170 TS254             -1.8628 -1.8343             -1.8628 -1.8343 TS254 170
171 TS261             -1.8628 -1.8343             -1.8628 -1.8343 TS261 171
172 TS263             -1.8628 -1.8343             -1.8628 -1.8343 TS263 172
173 TS282             -1.8628 -1.8343             -1.8628 -1.8343 TS282 173
174 TS314             -1.8628 -1.8343             -1.8628 -1.8343 TS314 174
175 TS330             -1.8628 -1.8343             -1.8628 -1.8343 TS330 175
176 TS336             -1.8628 -1.8343             -1.8628 -1.8343 TS336 176
177 TS362             -1.8628 -1.8343             -1.8628 -1.8343 TS362 177
178 TS439             -1.8628 -1.8343             -1.8628 -1.8343 TS439 178