T0622

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0622

3NKL from unknown species

Target type: Human/Server

Target sequence:

>T0622 3NKL, unknown species, 138 residues
KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLGRVAVTPQAELMEANIKD

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nkl

Jmol of T0622 structure : 3nkl

PyMOL of T0622

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0622A0-1211-121
T0622B0-1221-122

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix;Transcriptional repressor Rex, C-terminal domain

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2dt5_A | PyMOL of 2dt5 A 78-203

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

CoA binding domain (PF02629).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0622 T0622 T0622 T0622
First score First Z-score Best score Best Z-score
1 TS400 71.6940 68.1130 1.3526 1.4815 76.4460 69.0080 1.7916 1.5550 TS400 1
2 TS324 70.0410 62.1900 1.1999 0.9951 70.0410 63.7050 1.1999 1.1195 TS324 2
3 TS402 69.6280 59.4350 1.1617 0.7688 70.8680 64.2560 1.2763 1.1647 TS402 3
4 TS114 69.2150 67.4240 1.1236 1.4249 69.2150 67.4930 1.1236 1.4306 TS114 4
5 TS033 69.0080 66.2530 1.1044 1.3287 69.4210 67.2180 1.1426 1.4080 TS033 5
6 TS477 69.0080 65.5650 1.1044 1.2722 70.2480 65.9090 1.2190 1.3005 TS477 6
7 TS380 69.0080 64.1870 1.1044 1.1591 69.6280 65.0140 1.1617 1.2270 TS380 7
8 TS419 69.0080 63.6360 1.1044 1.1138 69.0080 65.0140 1.1044 1.2270 TS419 8
9 TS096 69.0080 62.6720 1.1044 1.0347 70.4550 66.6670 1.2381 1.3627 TS096 9
10 TS104 68.5950 62.8100 1.0663 1.0460 69.2150 67.4930 1.1236 1.4306 TS104 10
11 TS016 68.3880 65.2200 1.0472 1.2439 68.5950 65.4270 1.0663 1.2609 TS016 11
12 TS365 68.3880 61.2950 1.0472 0.9216 68.3880 61.2950 1.0472 0.9216 TS365 12
13 TS418 67.9750 59.4350 1.0090 0.7688 67.9750 64.6690 1.0090 1.1987 TS418 13
14 TS240 67.7690 58.6780 0.9900 0.7067 67.7690 58.6780 0.9900 0.7067 TS240 14
15 TS428 67.7690 58.4020 0.9900 0.6840 69.0080 64.7380 1.1044 1.2043 TS428 15
16 TS408 67.4180 60.4510 0.9575 0.8523 67.4180 60.8820 0.9575 0.8877 TS408 16
17 TS386 67.3550 64.1870 0.9517 1.1591 67.7690 64.1870 0.9900 1.1591 TS386 17
18 TS490 67.3550 63.6360 0.9517 1.1138 67.5620 64.1870 0.9708 1.1591 TS490 18
19 TS236 67.3550 63.6360 0.9517 1.1138 67.3550 64.0500 0.9517 1.1478 TS236 19
20 TS094 67.3550 63.3610 0.9517 1.0912 67.3550 64.0500 0.9517 1.1478 TS094 20
21 TS470 67.3550 63.3610 0.9517 1.0912 67.3550 64.0500 0.9517 1.1478 TS470 21
22 TS407 67.3550 63.3610 0.9517 1.0912 67.3550 64.0500 0.9517 1.1478 TS407 22
23 TS242 66.5290 57.5760 0.8754 0.6162 66.5290 59.1600 0.8754 0.7462 TS242 23
24 TS088 66.3220 62.6030 0.8563 1.0290 66.7360 63.8430 0.8945 1.1308 TS088 24
25 TS295 66.1890 62.9100 0.8440 1.0542 70.8680 69.0080 1.2763 1.5550 TS295 25
26 TS275 65.9090 59.9860 0.8181 0.8141 65.9090 59.9860 0.8181 0.8141 TS275 26
27 TS424 65.9090 59.4350 0.8181 0.7688 67.7690 60.5370 0.9900 0.8593 TS424 27
28 TS199 65.7020 63.3610 0.7990 1.0912 65.7020 63.3610 0.7990 1.0912 TS199 28
29 TS449 65.2890 62.3970 0.7608 1.0121 65.2890 62.3970 0.7608 1.0121 TS449 29
30 TS453 65.2890 62.3970 0.7608 1.0121 65.2890 62.3970 0.7608 1.0121 TS453 30
31 TS346 65.2890 62.3970 0.7608 1.0121 65.2890 62.3970 0.7608 1.0121 TS346 31
32 TS457 64.8760 62.3970 0.7227 1.0121 66.9420 62.3970 0.9136 1.0121 TS457 32
33 TS458 64.8760 58.8150 0.7227 0.7179 65.4960 61.6390 0.7800 0.9498 TS458 33
34 TS129 64.6690 56.8180 0.7036 0.5539 65.0830 60.3310 0.7418 0.8424 TS129 34
35 TS291 64.4630 61.9830 0.6845 0.9781 64.6690 61.9830 0.7036 0.9781 TS291 35
36 TS103 64.4630 60.8820 0.6845 0.8877 64.4630 60.8820 0.6845 0.8877 TS103 36
37 TS361 64.2560 59.2980 0.6654 0.7576 64.8760 60.9500 0.7227 0.8932 TS361 37
38 TS026 64.2560 58.8840 0.6654 0.7236 64.2560 58.8840 0.6654 0.7236 TS026 38
39 TS452 64.0500 60.8820 0.6464 0.8877 64.2560 61.0880 0.6654 0.9046 TS452 39
40 TS297 64.0500 58.4020 0.6464 0.6840 66.9420 65.2890 0.9136 1.2496 TS297 40
41 TS102 64.0500 52.0660 0.6464 0.1637 64.0500 53.3750 0.6464 0.2712 TS102 41
42 TS429 63.8430 60.6750 0.6272 0.8707 63.8430 60.6750 0.6272 0.8707 TS429 42
43 TS382 63.8430 59.7110 0.6272 0.7915 65.9090 62.7410 0.8181 1.0403 TS382 43
44 TS302 63.8430 59.4350 0.6272 0.7688 63.8430 60.8820 0.6272 0.8877 TS302 44
45 TS142 63.8430 59.4350 0.6272 0.7688 63.8430 60.8820 0.6272 0.8877 TS142 45
46 TS110 63.8430 59.4350 0.6272 0.7688 63.8430 59.4350 0.6272 0.7688 TS110 46
47 TS366 63.8430 57.3690 0.6272 0.5992 63.8430 59.2290 0.6272 0.7519 TS366 47
48 TS063 63.8430 57.3690 0.6272 0.5992 63.8430 59.2290 0.6272 0.7519 TS063 48
49 TS147 63.4300 58.1960 0.5891 0.6671 70.4550 65.8400 1.2381 1.2948 TS147 49
50 TS047 63.2230 60.1930 0.5700 0.8311 63.2230 60.1930 0.5700 0.8311 TS047 50
51 TS117 63.2230 59.5040 0.5700 0.7745 63.8430 59.5040 0.6272 0.7745 TS117 51
52 TS276 63.0170 58.0580 0.5509 0.6557 63.0170 58.0580 0.5509 0.6557 TS276 52
53 TS077 63.0170 58.0580 0.5509 0.6557 63.0170 58.0580 0.5509 0.6557 TS077 53
54 TS286 63.0170 58.0580 0.5509 0.6557 63.0170 58.0580 0.5509 0.6557 TS286 54
55 TS253 63.0170 54.0630 0.5509 0.3277 65.4960 60.8130 0.7800 0.8820 TS253 55
56 TS174 62.8100 56.6120 0.5318 0.5370 62.8100 56.6120 0.5318 0.5370 TS174 56
57 TS461 62.6030 57.0940 0.5127 0.5766 62.6030 57.0940 0.5127 0.5766 TS461 57
58 TS028 62.6030 55.4410 0.5127 0.4408 62.6030 55.4410 0.5127 0.4408 TS028 58
59 TS113 62.6030 53.5120 0.5127 0.2824 66.1160 60.8820 0.8372 0.8877 TS113 59
60 TS002 62.6030 53.5120 0.5127 0.2824 62.8100 55.2340 0.5318 0.4238 TS002 60
61 TS119 62.3970 57.4380 0.4936 0.6048 63.0170 57.9200 0.5509 0.6444 TS119 61
62 TS409 62.3970 55.9230 0.4936 0.4804 62.3970 55.9230 0.4936 0.4804 TS409 62
63 TS037 62.3970 54.5450 0.4936 0.3673 67.9750 65.9090 1.0090 1.3005 TS037 63
64 TS395 61.7770 54.0630 0.4364 0.3277 66.3930 64.6170 0.8628 1.1944 TS395 64
65 TS360 61.7770 51.8600 0.4364 0.1468 61.7770 51.8600 0.4364 0.1468 TS360 65
66 TS149 61.5700 56.6120 0.4172 0.5370 61.5700 56.6120 0.4172 0.5370 TS149 66
67 TS391 61.5700 55.7850 0.4172 0.4691 61.5700 55.7850 0.4172 0.4691 TS391 67
68 TS127 61.5700 55.6470 0.4172 0.4578 61.9830 56.8870 0.4554 0.5596 TS127 68
69 TS055 61.3640 51.8600 0.3982 0.1468 61.3640 51.8600 0.3982 0.1468 TS055 69
70 TS481 61.3640 51.5840 0.3982 0.1241 61.5700 52.3420 0.4172 0.1863 TS481 70
71 TS018 61.3640 51.4460 0.3982 0.1128 61.3640 51.4460 0.3982 0.1128 TS018 71
72 TS172 61.0660 52.1860 0.3707 0.1735 65.4960 58.8150 0.7800 0.7179 TS172 72
73 TS484 60.7440 54.5450 0.3409 0.3673 69.2150 63.0170 1.1236 1.0630 TS484 73
74 TS299 60.5370 55.3030 0.3218 0.4295 64.4630 59.0220 0.6845 0.7349 TS299 74
75 TS165 60.3310 53.5810 0.3028 0.2881 62.6030 58.8840 0.5127 0.7236 TS165 75
76 TS045 60.1240 53.6500 0.2836 0.2938 60.1240 53.6500 0.2836 0.2938 TS045 76
77 TS170 59.7110 50.8950 0.2455 0.0675 59.7110 50.8950 0.2455 0.0675 TS170 77
78 TS166 59.0910 50.4130 0.1882 0.0279 63.2230 59.7800 0.5700 0.7972 TS166 78
79 TS192 59.0910 49.1740 0.1882 -0.0738 59.0910 49.1740 0.1882 -0.0738 TS192 79
80 TS307 58.6780 50.2750 0.1500 0.0166 60.1240 55.5790 0.2836 0.4522 TS307 80
81 AL285 58.0580 55.3030 0.0928 0.4295 58.0580 55.3030 0.0928 0.4295 AL285 81
82 TS186 58.0580 48.8290 0.0928 -0.1022 59.0910 50.9640 0.1882 0.0732 TS186 82
83 TS353 57.8510 55.2340 0.0736 0.4238 61.3640 57.3690 0.3982 0.5992 TS353 83
84 TS214 57.8510 47.9340 0.0736 -0.1756 58.2640 48.8290 0.1118 -0.1022 TS214 84
85 TS208 57.8510 46.4190 0.0736 -0.3001 57.8510 49.3110 0.0736 -0.0626 TS208 85
86 TS215 57.4380 48.0720 0.0355 -0.1643 62.8100 55.2340 0.5318 0.4238 TS215 86
87 TS436 57.4380 47.9340 0.0355 -0.1756 61.1570 54.6830 0.3791 0.3786 TS436 87
88 TS319 57.0250 49.1740 -0.0027 -0.0738 64.0500 55.9230 0.6464 0.4804 TS319 88
89 TS056 57.0250 49.1740 -0.0027 -0.0738 57.0250 49.1740 -0.0027 -0.0738 TS056 89
90 TS273 57.0250 49.1740 -0.0027 -0.0738 64.0500 55.9230 0.6464 0.4804 TS273 90
91 TS476 56.8180 49.7250 -0.0218 -0.0286 56.8180 51.9280 -0.0218 0.1523 TS476 91
92 TS420 56.8180 49.7250 -0.0218 -0.0286 56.8180 49.7250 -0.0218 -0.0286 TS420 92
93 TS171 56.8180 49.7250 -0.0218 -0.0286 56.8180 51.9280 -0.0218 0.1523 TS171 93
94 TS471 56.8180 49.7250 -0.0218 -0.0286 56.8180 49.7250 -0.0218 -0.0286 TS471 94
95 TS423 56.8180 46.2120 -0.0218 -0.3171 67.9750 59.0220 1.0090 0.7349 TS423 95
96 TS314 56.6120 49.5870 -0.0408 -0.0399 56.6120 49.5870 -0.0408 -0.0399 TS314 96
97 TS399 56.6120 47.3830 -0.0408 -0.2209 59.5040 52.0660 0.2264 0.1637 TS399 97
98 TS358 55.9920 51.7220 -0.0981 0.1354 60.9500 53.3750 0.3600 0.2712 TS358 98
99 TS328 55.5790 44.1460 -0.1363 -0.4867 55.5790 44.1460 -0.1363 -0.4867 TS328 99
100 TS435 55.3720 48.2090 -0.1554 -0.1531 55.3720 48.2090 -0.1554 -0.1531 TS435 100
101 TS347 54.7520 53.0990 -0.2127 0.2485 55.9920 53.0990 -0.0981 0.2485 TS347 101
102 TS035 54.7520 42.9060 -0.2127 -0.5886 54.7520 42.9060 -0.2127 -0.5886 TS035 102
103 TS207 54.7520 41.5290 -0.2127 -0.7016 56.4050 44.6970 -0.0600 -0.4415 TS207 103
104 TS301 54.5450 51.6530 -0.2318 0.1298 59.2980 56.2670 0.2073 0.5087 TS301 104
105 TS244 54.3390 43.1820 -0.2508 -0.5659 59.0910 56.0610 0.1882 0.4918 TS244 105
106 TS080 53.7190 43.5260 -0.3081 -0.5376 62.6030 56.3360 0.5127 0.5143 TS080 106
107 TS213 53.0990 41.9420 -0.3654 -0.6677 60.9500 54.4770 0.3600 0.3617 TS213 107
108 TS321 52.8930 40.2890 -0.3844 -0.8035 67.3550 63.0850 0.9517 1.0686 TS321 108
109 TS300 52.8690 41.5300 -0.3866 -0.7016 67.5620 59.5730 0.9708 0.7802 TS300 109
110 TS173 52.8690 41.5300 -0.3866 -0.7016 64.0500 55.9230 0.6464 0.4804 TS173 110
111 TS278 52.0660 43.1130 -0.4608 -0.5716 52.0660 43.1130 -0.4608 -0.5716 TS278 111
112 AL396 51.8600 40.7020 -0.4799 -0.7696 51.8600 40.7020 -0.4799 -0.7696 AL396 112
113 TS083 51.8440 44.8770 -0.4813 -0.4267 56.8180 49.5180 -0.0218 -0.0456 TS083 113
114 TS206 51.6530 47.2450 -0.4990 -0.2322 51.6530 47.2450 -0.4990 -0.2322 TS206 114
115 TS228 49.7930 46.0740 -0.6708 -0.3284 61.7770 56.9560 0.4364 0.5653 TS228 115
116 TS345 49.7930 44.2840 -0.6708 -0.4754 59.7110 50.8260 0.2455 0.0618 TS345 116
117 TS304 49.7930 43.3200 -0.6708 -0.5546 49.7930 43.3200 -0.6708 -0.5546 TS304 117
118 TS296 48.9750 41.7350 -0.7464 -0.6847 59.2980 54.3390 0.2073 0.3503 TS296 118
119 TS001 47.1070 33.4710 -0.9190 -1.3634 64.0500 55.9230 0.6464 0.4804 TS001 119
120 TS218 44.8350 36.1570 -1.1289 -1.1428 44.8350 38.4990 -1.1289 -0.9505 TS218 120
121 TS220 44.6280 36.9150 -1.1480 -1.0805 52.4590 40.9840 -0.4245 -0.7464 TS220 121
122 TS447 44.6280 36.9150 -1.1480 -1.0805 52.4590 40.9840 -0.4245 -0.7464 TS447 122
123 TS403 43.8020 37.6030 -1.2243 -1.0240 43.8020 38.0170 -1.2243 -0.9900 TS403 123
124 TS245 41.9420 35.8820 -1.3962 -1.1654 41.9420 35.8820 -1.3962 -1.1654 TS245 124
125 TS250 40.5740 33.7430 -1.5226 -1.3410 53.7190 46.2810 -0.3081 -0.3114 TS250 125
126 TS154 34.2980 28.7880 -2.1024 -1.7479 34.2980 28.7880 -2.1024 -1.7479 TS154 126
127 TS042 33.4710 23.0030 -2.1788 -2.2230 36.1570 33.6780 -1.9307 -1.3464 TS042 127
128 TS153 32.6450 29.8210 -2.2551 -1.6631 32.6450 29.8210 -2.2551 -1.6631 TS153 128
129 TS373 32.6450 23.0030 -2.2551 -2.2230 32.6450 23.0030 -2.2551 -2.2230 TS373 129
130 TS084 32.0250 28.8570 -2.3124 -1.7423 36.4750 29.7810 -1.9013 -1.6664 TS084 130
131 TS316 30.9920 25.6890 -2.4079 -2.0024 39.0500 35.4680 -1.6634 -1.1994 TS316 131
132 TS200 27.6640 24.1800 -2.7153 -2.1264 33.4710 27.5480 -2.1788 -1.8498 TS200 132
133 TS257 27.2730 24.3800 -2.7515 -2.1099 41.1160 35.6060 -1.4725 -1.1880 TS257 133
134 TS014 27.2540 19.0570 -2.7532 -2.5471 30.9920 24.9310 -2.4079 -2.0647 TS014 134
135 TS264 27.0660 24.0360 -2.7706 -2.1382 38.6360 36.5700 -1.7016 -1.1089 TS264 135
136 TS355 26.8600 24.2420 -2.7896 -2.1213 37.0900 30.4410 -1.8445 -1.6122 TS355 136
137 TS020 26.4460 23.2780 -2.8279 -2.2004 26.4460 23.2780 -2.8279 -2.2004 TS020 137
138 TS350 25.4130 23.5540 -2.9233 -2.1778 35.7440 31.4740 -1.9688 -1.5274 TS350 138
139 TS333 22.7460 21.3800 -3.1697 -2.3563 42.9750 35.5370 -1.3007 -1.1937 TS333 139
140 TS289 22.3140 20.6610 -3.2096 -2.4153 22.3140 20.6610 -3.2096 -2.4153 TS289 140
141 TS182 21.9010 14.1870 -3.2478 -2.9470 22.9510 19.2620 -3.1508 -2.5302 TS182 141
142 RANDOM 18.36 15.21 -3.5749 -2.8630 18.36 15.21 -3.5749 -2.8630 RANDOM 142
143 TS311 17.7690 14.8070 -3.6295 -2.8961 45.0410 41.3220 -1.1099 -0.7186 TS311 143
144 TS229 17.5620 13.9810 -3.6486 -2.9639 18.1820 15.9150 -3.5914 -2.8051 TS229 144
145 TS444 17.2130 15.9150 -3.6809 -2.8051 17.5620 15.9150 -3.6486 -2.8051 TS444 145
146 TS248 15.7020 13.9810 -3.8205 -2.9639 16.1160 14.1870 -3.7822 -2.9470 TS248 146
147 TS178 15.5740 11.8170 -3.8323 -3.1416 15.5740 11.8170 -3.8323 -3.1416 TS178 147
148 TS029 15.4960 12.1210 -3.8395 -3.1167 47.9340 43.2510 -0.8426 -0.5602 TS029 148
149 TS336 15.4960 11.7770 -3.8395 -3.1449 17.2130 14.6170 -3.6809 -2.9117 TS336 149
150 TS450 13.8430 11.5010 -3.9922 -3.1676 55.1650 43.0440 -0.1745 -0.5772 TS450 150
151 TS009             -3.5749 -2.8630             -3.5749 -2.8630 TS009 151
152 TS039             -3.5749 -2.8630             -3.5749 -2.8630 TS039 152
153 TS044             -3.5749 -2.8630             -3.5749 -2.8630 TS044 153
154 TS060             -3.5749 -2.8630             -3.5749 -2.8630 TS060 154
155 TS061             -3.5749 -2.8630             -3.5749 -2.8630 TS061 155
156 TS074             -3.5749 -2.8630             -3.5749 -2.8630 TS074 156
157 TS075             -3.5749 -2.8630             -3.5749 -2.8630 TS075 157
158 TS086             -3.5749 -2.8630             -3.5749 -2.8630 TS086 158
159 TS105             -3.5749 -2.8630             -3.5749 -2.8630 TS105 159
160 TS140             -3.5749 -2.8630             -3.5749 -2.8630 TS140 160
161 TS150             -3.5749 -2.8630             -3.5749 -2.8630 TS150 161
162 TS152             -3.5749 -2.8630             -3.5749 -2.8630 TS152 162
163 TS160             -3.5749 -2.8630             -3.5749 -2.8630 TS160 163
164 TS180             -3.5749 -2.8630             -3.5749 -2.8630 TS180 164
165 TS184             -3.5749 -2.8630             -3.5749 -2.8630 TS184 165
166 TS189             -3.5749 -2.8630             -3.5749 -2.8630 TS189 166
167 TS254             -3.5749 -2.8630             -3.5749 -2.8630 TS254 167
168 TS261             -3.5749 -2.8630             -3.5749 -2.8630 TS261 168
169 TS263             -3.5749 -2.8630             -3.5749 -2.8630 TS263 169
170 TS269             -3.5749 -2.8630             -3.5749 -2.8630 TS269 170
171 TS279             -3.5749 -2.8630             -3.5749 -2.8630 TS279 171
172 TS282             -3.5749 -2.8630             -3.5749 -2.8630 TS282 172
173 TS322             -3.5749 -2.8630             -3.5749 -2.8630 TS322 173
174 TS330             -3.5749 -2.8630             -3.5749 -2.8630 TS330 174
175 TS331             -3.5749 -2.8630             -3.5749 -2.8630 TS331 175
176 TS362             -3.5749 -2.8630             -3.5749 -2.8630 TS362 176
177 TS433             -3.5749 -2.8630             -3.5749 -2.8630 TS433 177
178 TS439             -3.5749 -2.8630             -3.5749 -2.8630 TS439 178