T0568

NP_250297.1 from Pseudomonas aeruginosa PA01

Target sequence:

>T0568 NP_250297.1, Pseudomonas aeruginosa PA01, 158 residues
MSFIRSCISRSVFLLGAGVAVAAQAEVRIDGPIEYGVFESRYQDFQPGERVLTRSEQNIQQTTEVPAKLGTKFGMRYQLSGKQEGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAPTDVMAYEFTEPHEVVKGEWRLMVFQGDRLLAEKSFDVR

HHsearch_pdb70_15May10, HHsearch_scop70_1.75, HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:

Method: X-ray, res= Å, R/Rfree=

Determined by: JCSG

PDB ID: 3n6y

Jmol of T0568 structure : 3n6y

PyMOL of T0568

Domains:

Single domain protein.

DomainID	Chain	Range in raw pdb	Range in targetpdb
T0568	A	0-158	23-158
T0568	B	0-158	23-158

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

The C-terminal (around 59?-158) of this target is a MG2 (macroglobulin) domain of alpha-2-macroglobulin. Ig-like fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM alignment.

Closest templates:

Template manually selected by shuoyong:

2pn5_A | PyMOL of 2pn5 A 98-196

Template selected by HHpred server group:

2pn5_A | PyMOL

2p9r_A | PyMOL

Target sequence - PDB file inconsistencies:

Sequence classification:

A2M_N: MG2 domain (PF01835).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

#	GROUP ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	↓ GROUP	#
		T0568		T0568		T0568		T0568
		First score		First Z-score		Best score		Best Z-score
1	TS324	43.4430	39.7540	1.4917	1.8301	43.6480	40.0960	1.5114	1.8688	TS324	1
2	TS300	43.4430	39.6170	1.4917	1.8147	43.4430	39.6170	1.4917	1.8147	TS300	2
3	TS240	43.4430	39.6170	1.4917	1.8147	43.4430	39.6170	1.4917	1.8147	TS240	3
4	TS174	42.8860	35.1630	1.4384	1.3116	42.8860	35.1630	1.4384	1.3116	TS174	4
5	TS110	42.8860	35.1630	1.4384	1.3116	42.8860	35.1630	1.4384	1.3116	TS110	5
6	TS088	42.8280	39.5490	1.4329	1.8070	42.8280	39.5490	1.4329	1.8070	TS088	6
7	TS399	42.8280	32.9920	1.4329	1.0663	42.8280	32.9920	1.4329	1.0663	TS399	7
8	TS273	42.6230	35.9290	1.4133	1.3981	42.6230	35.9290	1.4133	1.3981	TS273	8
9	TS103	42.4180	35.3140	1.3936	1.3286	42.4180	35.3140	1.3936	1.3286	TS103	9
10	TS035	41.8030	37.1580	1.3348	1.5369	41.8030	37.1580	1.3348	1.5369	TS035	10
11	TS429	41.5980	33.6750	1.3152	1.1435	41.5980	33.6750	1.3152	1.1435	TS429	11
12	TS361	41.3930	33.8800	1.2955	1.1666	42.0080	33.8800	1.3544	1.1666	TS361	12
13	TS113	40.9840	33.7430	1.2564	1.1512	42.2130	36.7490	1.3740	1.4907	TS113	13
14	TS114	40.9840	32.9230	1.2564	1.0585	41.3930	33.4700	1.2955	1.1203	TS114	14
15	TS165	40.5740	34.6990	1.2172	1.2592	40.5740	34.7680	1.2172	1.2669	TS165	15
16	TS170	40.1640	35.6560	1.1779	1.3672	40.1640	35.6560	1.1779	1.3672	TS170	16
17	TS147	39.7540	32.9230	1.1387	1.0585	40.1640	34.8360	1.1779	1.2746	TS147	17
18	TS295	39.6340	34.6210	1.1272	1.2503	44.4670	40.4370	1.5897	1.9073	TS295	18
19	TS365	39.5490	34.7680	1.1191	1.2669	39.5490	34.7680	1.1191	1.2669	TS365	19
20	TS321	39.4310	34.4170	1.1078	1.2273	44.2620	39.6170	1.5701	1.8147	TS321	20
21	TS104	38.9340	34.1530	1.0602	1.1975	39.5490	34.7680	1.1191	1.2669	TS104	21
22	TS423	38.5250	34.2900	1.0210	1.2130	38.7300	34.2900	1.0407	1.2130	TS423	22
23	TS061	38.5250	33.8800	1.0210	1.1666	38.5250	33.8800	1.0210	1.1666	TS061	23
24	TS207	38.5250	32.2400	1.0210	0.9814	38.5250	33.6070	1.0210	1.1358	TS207	24
25	TS299	38.4150	32.9950	1.0105	1.0667	38.7300	34.6310	1.0407	1.2515	TS299	25
26	TS386	38.1150	32.0360	0.9818	0.9584	38.1150	32.0360	0.9818	0.9584	TS386	26
27	TS096	37.9100	35.8610	0.9622	1.3904	39.5490	35.8610	1.1191	1.3904	TS096	27
28	TS380	37.9100	34.4950	0.9622	1.2361	37.9100	34.4950	0.9622	1.2361	TS380	28
29	TS428	37.7050	32.3770	0.9426	0.9969	38.3200	33.2650	1.0014	1.0972	TS428	29
30	TS199	37.7050	32.3770	0.9426	0.9969	37.7050	32.3770	0.9426	0.9969	TS199	30
31	TS016	37.5000	32.0360	0.9229	0.9584	37.7050	32.2400	0.9426	0.9814	TS016	31
32	TS102	37.5000	30.8060	0.9229	0.8194	41.3930	35.5190	1.2955	1.3518	TS102	32
33	TS458	37.5000	30.8060	0.9229	0.8194	38.7300	32.3090	1.0407	0.9892	TS458	33
34	TS172	37.5000	30.5330	0.9229	0.7886	42.4180	32.7190	1.3936	1.0355	TS172	34
35	TS382	37.2950	31.4210	0.9033	0.8889	40.3690	37.3630	1.1975	1.5601	TS382	35
36	TS407	37.0900	29.8500	0.8837	0.7114	39.1390	29.8500	1.0798	0.7114	TS407	36
37	TS449	37.0900	29.5770	0.8837	0.6806	37.0900	29.5770	0.8837	0.6806	TS449	37
38	TS453	37.0900	29.5770	0.8837	0.6806	37.0900	29.5770	0.8837	0.6806	TS453	38
39	TS346	37.0900	29.5770	0.8837	0.6806	37.0900	29.5770	0.8837	0.6806	TS346	39
40	TS037	36.8850	31.1480	0.8641	0.8581	41.2600	35.7050	1.2828	1.3728	TS037	40
41	TS476	36.6800	32.7190	0.8445	1.0355	37.0900	33.5380	0.8837	1.1280	TS476	41
42	TS419	36.6800	31.7620	0.8445	0.9274	36.6800	31.7620	0.8445	0.9274	TS419	42
43	TS166	36.6800	31.7620	0.8445	0.9274	36.6800	31.7620	0.8445	0.9274	TS166	43
44	TS129	36.6800	29.1670	0.8445	0.6343	37.2950	29.5080	0.9033	0.6728	TS129	44
45	TS094	36.6800	25.4780	0.8445	0.2176	37.5000	31.1480	0.9229	0.8581	TS094	45
46	TS418	36.4750	29.0980	0.8248	0.6265	36.4750	29.0980	0.8248	0.6265	TS418	46
47	TS490	36.4750	28.0740	0.8248	0.5108	37.9100	33.2650	0.9622	1.0972	TS490	47
48	TS208	36.0660	29.9180	0.7857	0.7191	37.8050	33.2650	0.9521	1.0972	TS208	48
49	TS060	35.8610	28.2100	0.7661	0.5262	43.4430	39.6170	1.4917	1.8147	TS060	49
50	TS470	35.7720	28.7940	0.7576	0.5922	44.2620	39.6170	1.5701	1.8147	TS470	50
51	TS408	35.6560	30.3280	0.7465	0.7654	37.9100	33.1970	0.9622	1.0895	TS408	51
52	TS400	35.0410	29.9860	0.6876	0.7268	38.1150	35.9970	0.9818	1.4058	TS400	52
53	TS002	35.0410	27.5270	0.6876	0.4490	37.7050	28.4150	0.9426	0.5494	TS002	53
54	TS001	34.9590	31.3010	0.6797	0.8753	42.6230	35.9290	1.4133	1.3981	TS001	54
55	TS213	34.8360	30.1910	0.6680	0.7500	34.8360	30.1910	0.6680	0.7500	TS213	55
56	TS452	34.8360	25.9560	0.6680	0.2716	39.7540	34.5630	1.1387	1.2438	TS452	56
57	TS296	34.6310	29.3030	0.6484	0.6497	42.6230	35.9290	1.4133	1.3981	TS296	57
58	TS248	34.4260	31.8310	0.6287	0.9352	34.4260	31.8310	0.6287	0.9352	TS248	58
59	TS319	34.2210	29.1670	0.6091	0.6343	42.6230	35.9290	1.4133	1.3981	TS319	59
60	TS056	34.2210	29.1670	0.6091	0.6343	34.9590	31.3010	0.6797	0.8753	TS056	60
61	AL396	34.2210	28.3470	0.6091	0.5417	34.2210	28.3470	0.6091	0.5417	AL396	61
62	TS302	34.0160	28.1420	0.5895	0.5185	34.0160	28.2520	0.5895	0.5309	TS302	62
63	TS142	34.0160	28.1420	0.5895	0.5185	34.0160	28.2520	0.5895	0.5309	TS142	63
64	TS220	34.0160	28.1420	0.5895	0.5185	34.0160	28.1420	0.5895	0.5185	TS220	64
65	TS447	34.0160	28.1420	0.5895	0.5185	34.0160	28.1420	0.5895	0.5185	TS447	65
66	TS173	33.6070	29.3030	0.5504	0.6497	34.2210	31.3520	0.6091	0.8811	TS173	66
67	TS395	32.7870	26.5030	0.4719	0.3334	37.0900	32.3090	0.8837	0.9892	TS395	67
68	TS297	32.5820	27.6640	0.4522	0.4645	32.9920	28.3470	0.4915	0.5417	TS297	68
69	TS301	32.5820	26.7080	0.4522	0.3565	42.6230	35.9290	1.4133	1.3981	TS301	69
70	TS192	32.1720	25.2050	0.4130	0.1868	32.1720	25.2050	0.4130	0.1868	TS192	70
71	TS215	31.9670	24.5900	0.3934	0.1173	35.0410	26.9130	0.6876	0.3797	TS215	71
72	TS080	31.9670	24.5900	0.3934	0.1173	36.6800	26.9130	0.8445	0.3797	TS080	72
73	TS119	31.9670	24.5900	0.3934	0.1173	35.8610	26.9130	0.7661	0.3797	TS119	73
74	AL285	31.3520	27.2540	0.3345	0.4182	31.3520	27.2540	0.3345	0.4182	AL285	74
75	TS245	31.3520	23.7020	0.3345	0.0170	31.3520	23.7020	0.3345	0.0170	TS245	75
76	TS345	31.1480	26.0930	0.3150	0.2871	32.1720	29.3030	0.4130	0.6497	TS345	76
77	TS077	31.1480	25.5460	0.3150	0.2253	31.1480	25.5460	0.3150	0.2253	TS077	77
78	TS286	31.1480	25.5460	0.3150	0.2253	31.1480	25.5460	0.3150	0.2253	TS286	78
79	TS457	31.1480	25.0000	0.3150	0.1636	34.8360	31.4210	0.6680	0.8889	TS457	79
80	TS276	30.7380	27.8690	0.2758	0.4877	30.7380	27.8690	0.2758	0.4877	TS276	80
81	TS477	30.7380	27.8690	0.2758	0.4877	30.7380	27.8690	0.2758	0.4877	TS477	81
82	TS275	30.3280	23.9070	0.2365	0.0402	31.1480	28.2790	0.3150	0.5340	TS275	82
83	TS028	29.8780	26.3550	0.1935	0.3167	29.9180	26.3550	0.1973	0.3167	TS028	83
84	TS033	29.5080	24.4540	0.1580	0.1019	29.5080	24.4540	0.1580	0.1019	TS033	84
85	TS045	29.5080	22.8140	0.1580	-0.0833	29.9180	25.4780	0.1973	0.2176	TS045	85
86	TS307	28.8930	25.4780	0.0992	0.2176	33.1970	29.5080	0.5111	0.6728	TS307	86
87	TS420	28.6890	25.2730	0.0797	0.1945	28.6890	25.2730	0.0797	0.1945	TS420	87
88	TS471	28.6890	25.2730	0.0797	0.1945	28.6890	25.2730	0.0797	0.1945	TS471	88
89	TS402	28.4840	23.9750	0.0600	0.0478	31.1480	25.0000	0.3150	0.1636	TS402	89
90	TS353	27.2540	23.8390	-0.0577	0.0325	34.4260	29.6450	0.6287	0.6883	TS353	90
91	TS244	27.0490	21.7210	-0.0773	-0.2068	36.4750	32.3770	0.8248	0.9969	TS244	91
92	TS253	26.6390	22.8140	-0.1165	-0.0833	26.6390	23.2920	-0.1165	-0.0293	TS253	92
93	TS289	26.6390	22.1310	-0.1165	-0.1604	26.6390	22.1310	-0.1165	-0.1604	TS289	93
94	TS117	26.2300	24.8630	-0.1557	0.1481	26.8440	25.4780	-0.0969	0.2176	TS117	94
95	TS127	26.0250	22.3360	-0.1753	-0.1373	32.1140	27.7780	0.4075	0.4774	TS127	95
96	TS171	25.4100	22.8140	-0.2342	-0.0833	25.4100	22.8140	-0.2342	-0.0833	TS171	96
97	TS083	24.5930	20.2570	-0.3124	-0.3721	28.4840	24.3850	0.0600	0.0941	TS083	97
98	TS055	22.1310	19.3990	-0.5480	-0.4690	22.1310	19.3990	-0.5480	-0.4690	TS055	98
99	TS450	22.1310	19.1260	-0.5480	-0.4999	22.1310	19.1260	-0.5480	-0.4999	TS450	99
100	TS242	20.6970	18.5790	-0.6853	-0.5617	20.6970	18.5790	-0.6853	-0.5617	TS242	100
101	TS316	20.4920	16.9400	-0.7049	-0.7468	20.4920	18.0220	-0.7049	-0.6246	TS316	101
102	TS047	20.3250	17.3440	-0.7209	-0.7012	20.3250	17.3440	-0.7209	-0.7012	TS047	102
103	TS200	19.8770	16.1890	-0.7637	-0.8316	22.3360	20.6970	-0.5284	-0.3224	TS200	103
104	TS214	19.3090	17.0730	-0.8181	-0.7318	21.5450	19.1730	-0.6041	-0.4946	TS214	104
105	TS018	19.3090	16.4630	-0.8181	-0.8007	27.4590	21.1070	-0.0381	-0.2761	TS018	105
106	TS186	19.3090	15.3120	-0.8181	-0.9307	20.2870	15.4370	-0.7245	-0.9166	TS186	106
107	TS355	18.8520	17.1450	-0.8618	-0.7236	18.8520	17.1450	-0.8618	-0.7236	TS355	107
108	TS424	18.6480	14.9590	-0.8814	-0.9706	37.2950	34.0160	0.9033	1.1820	TS424	108
109	TS311	18.2380	16.3250	-0.9206	-0.8163	18.2380	16.3250	-0.9206	-0.8163	TS311	109
110	TS291	18.2380	15.7790	-0.9206	-0.8779	37.0900	31.6260	0.8837	0.9120	TS291	110
111	TS026	17.2130	15.5740	-1.0187	-0.9011	17.2130	15.5740	-1.0187	-0.9011	TS026	111
112	TS366	17.0080	14.2080	-1.0383	-1.0554	17.0080	14.2080	-1.0383	-1.0554	TS366	112
113	TS063	17.0080	14.2080	-1.0383	-1.0554	17.0080	14.2080	-1.0383	-1.0554	TS063	113
114	TS014	16.8030	14.1390	-1.0579	-1.0632	16.8030	14.1390	-1.0579	-1.0632	TS014	114
115	TS084	16.4630	14.0920	-1.0905	-1.0685	17.0730	14.4310	-1.0321	-1.0302	TS084	115
116	TS484	16.3930	14.4810	-1.0972	-1.0245	17.6830	15.4470	-0.9737	-0.9154	TS484	116
117	TS153	15.9840	13.1150	-1.1363	-1.1788	15.9840	13.1150	-1.1363	-1.1788	TS153	117
118	TS229	15.5740	14.6860	-1.1756	-1.0014	16.1890	14.6860	-1.1167	-1.0014	TS229	118
119	TS218	15.1640	13.3200	-1.2148	-1.1557	15.8540	14.2760	-1.1488	-1.0477	TS218	119
120	RANDOM	15.07	12.97	-1.2238	-1.1952	15.07	12.97	-1.2238	-1.1952	RANDOM	120
121	TS435	14.9590	13.1830	-1.2344	-1.1712	29.0980	24.0440	0.1188	0.0556	TS435	121
122	TS403	14.9590	11.1340	-1.2344	-1.4026	14.9590	12.3630	-1.2344	-1.2638	TS403	122
123	TS257	14.7540	10.7920	-1.2540	-1.4412	19.2620	16.7350	-0.8226	-0.7699	TS257	123
124	TS328	14.5490	13.1830	-1.2737	-1.1712	14.5490	13.1830	-1.2737	-1.1712	TS328	124
125	TS304	14.3440	12.4320	-1.2933	-1.2560	14.7540	12.8420	-1.2540	-1.2097	TS304	125
126	TS149	14.3440	11.2700	-1.2933	-1.3872	14.3440	11.2700	-1.2933	-1.3872	TS149	126
127	TS236	14.1390	12.3630	-1.3129	-1.2638	17.6230	15.9150	-0.9795	-0.8626	TS236	127
128	TS333	14.1390	11.2020	-1.3129	-1.3949	14.1390	11.2020	-1.3129	-1.3949	TS333	128
129	TS481	14.1390	9.9730	-1.3129	-1.5337	21.7210	16.0520	-0.5872	-0.8471	TS481	129
130	TS409	13.8210	11.9240	-1.3433	-1.3134	25.2050	23.1560	-0.2538	-0.0447	TS409	130
131	TS350	13.7300	11.8170	-1.3521	-1.3255	18.0890	16.0570	-0.9349	-0.8465	TS350	131
132	TS182	13.7300	10.3140	-1.3521	-1.4952	16.8030	14.0030	-1.0579	-1.0785	TS182	132
133	TS264	13.5250	12.1580	-1.3717	-1.2869	14.5490	13.3200	-1.2737	-1.1557	TS264	133
134	TS042	13.5250	11.8850	-1.3717	-1.3178	19.1060	18.0220	-0.8375	-0.6246	TS042	134
135	TS360	13.1150	11.8170	-1.4109	-1.3255	26.4340	20.2870	-0.1362	-0.3687	TS360	135
136	TS278	13.1150	10.9290	-1.4109	-1.4258	13.1150	10.9290	-1.4109	-1.4258	TS278	136
137	TS282	12.9100	12.0900	-1.4305	-1.2946	31.3520	23.7020	0.3345	0.0170	TS282	137
138	TS206	12.8050	10.6370	-1.4406	-1.4587	12.8050	10.6370	-1.4406	-1.4587	TS206	138
139	TS029	11.9920	10.2300	-1.5184	-1.5047	15.7790	13.1830	-1.1559	-1.1712	TS029	139
140	TS314	11.8850	9.6990	-1.5286	-1.5647	23.7700	21.7210	-0.3911	-0.2068	TS314	140
141	TS250	11.6800	10.5190	-1.5483	-1.4721	11.6800	10.5190	-1.5483	-1.4721	TS250	141
142	TS436	10.6560	9.9730	-1.6463	-1.5337	10.6560	9.9730	-1.6463	-1.5337	TS436	142
143	TS461	10.4510	8.1970	-1.6659	-1.7343	11.4750	9.4260	-1.5679	-1.5955	TS461	143
144	TS075	9.8360	8.4700	-1.7247	-1.7035	10.9760	10.2980	-1.6156	-1.4970	TS075	144
145	TS009			-1.2238	-1.1952			-1.2238	-1.1952	TS009	145
146	TS020			-1.2238	-1.1952			-1.2238	-1.1952	TS020	146
147	TS039			-1.2238	-1.1952			-1.2238	-1.1952	TS039	147
148	TS044			-1.2238	-1.1952			-1.2238	-1.1952	TS044	148
149	TS074			-1.2238	-1.1952			-1.2238	-1.1952	TS074	149
150	TS086			-1.2238	-1.1952			-1.2238	-1.1952	TS086	150
151	TS105			-1.2238	-1.1952			-1.2238	-1.1952	TS105	151
152	TS140			-1.2238	-1.1952			-1.2238	-1.1952	TS140	152
153	TS150			-1.2238	-1.1952			-1.2238	-1.1952	TS150	153
154	TS152			-1.2238	-1.1952			-1.2238	-1.1952	TS152	154
155	TS154			-1.2238	-1.1952			-1.2238	-1.1952	TS154	155
156	TS160			-1.2238	-1.1952			-1.2238	-1.1952	TS160	156
157	TS178			-1.2238	-1.1952			-1.2238	-1.1952	TS178	157
158	TS180			-1.2238	-1.1952			-1.2238	-1.1952	TS180	158
159	TS184			-1.2238	-1.1952			-1.2238	-1.1952	TS184	159
160	TS189			-1.2238	-1.1952			-1.2238	-1.1952	TS189	160
161	TS228			-1.2238	-1.1952			-1.2238	-1.1952	TS228	161
162	TS254			-1.2238	-1.1952			-1.2238	-1.1952	TS254	162
163	TS261			-1.2238	-1.1952			-1.2238	-1.1952	TS261	163
164	TS263			-1.2238	-1.1952			-1.2238	-1.1952	TS263	164
165	TS269			-1.2238	-1.1952			-1.2238	-1.1952	TS269	165
166	TS279			-1.2238	-1.1952			-1.2238	-1.1952	TS279	166
167	TS322			-1.2238	-1.1952			-1.2238	-1.1952	TS322	167
168	TS330			-1.2238	-1.1952			-1.2238	-1.1952	TS330	168
169	TS331			-1.2238	-1.1952			-1.2238	-1.1952	TS331	169
170	TS336			-1.2238	-1.1952			-1.2238	-1.1952	TS336	170
171	TS347			-1.2238	-1.1952			-1.2238	-1.1952	TS347	171
172	TS358			-1.2238	-1.1952			-1.2238	-1.1952	TS358	172
173	TS362			-1.2238	-1.1952			-1.2238	-1.1952	TS362	173
174	TS373			-1.2238	-1.1952			-1.2238	-1.1952	TS373	174
175	TS391			-1.2238	-1.1952			-1.2238	-1.1952	TS391	175
176	TS433			-1.2238	-1.1952			-1.2238	-1.1952	TS433	176
177	TS439			-1.2238	-1.1952			-1.2238	-1.1952	TS439	177
178	TS444			-1.2238	-1.1952			-1.2238	-1.1952	TS444	178

Targets
515	516	517	518
519	520	521	522
523	524	525	526
527	528	529	530
531	532	533	534
535	536	537	538
539	540	541	542
543	544	545	546
547	548	549	550
551	552	553	554
555	556	557	558
559	560	561	562
563	564	565	566
567	568	569	570
571	572	573	574
575	576	577	578
579	580	581	582
583	584	585	586
587	588	589	590
591	592	593	594
595	596	597	598
599	600	601	602
603	604	605	606
607	608	609	610
611	612	613	614
615	616	617	618
619	620	621	622
623	624	625	626
627	628	629	630
631	632	633	634
635	636	637	638
639	640	641	642
643