T0518

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
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619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0518

ZP_02066194.1 from Bacteroides ovatus

Target type: Server only

Target sequence:

>T0518 ZP_02066194.1, Bacteroides ovatus, 288 residues
MKKVFYPLACCCLAAGVFASCGGQKKANAQEEPSKVALSYSKSLKAPETDSLNLPVDENGYITIFDGETFNGWRGYGKDRVPTKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKFKNFELELEWKVAKGSNSGILYLAQEVTSKDKDGNDVLEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLYDMIPAVPQNSKPFGEWNKAKIMVYKGTVVHGQNDENVLEYHLWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGLQDHGDDVWFRNIRVKVLD

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3nmb

Jmol of T0518 structure : 3nmb

PyMOL of T0518

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0518A33-28833-288

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

The N-terminal (around 1-60) is relative hard to predict, and it may fold like a small alpha helical domain. The majority of secondary structures of the rest part are beta-strands, which form complex topology in two sheets. Concanavalin A-like lectins/glucanases fold.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3hbk_A | PyMOL of 3hbk A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

The best hit of PDB is 3hbk_A, a putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080). And Pfam hit supports this: Domain of Unknown Function (DUF1080) (PF06439).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0518 T0518 T0518 T0518
First score First Z-score Best score Best Z-score
1 TS207 78.4180 68.8480 0.9362 0.7312 78.4180 68.8480 0.9362 0.7312 TS207 1
2 TS166 76.0740 71.5820 0.7527 0.9545 76.0740 71.5820 0.7527 0.9545 TS166 2
3 TS088 75.3910 71.8100 0.6993 0.9731 75.3910 71.8100 0.6993 0.9731 TS088 3
4 TS114 75.2930 71.5170 0.6916 0.9492 75.4880 71.9730 0.7068 0.9865 TS114 4
5 TS276 75.1950 69.6610 0.6839 0.7976 75.1950 69.9540 0.6839 0.8216 TS276 5
6 TS077 75.1950 69.6610 0.6839 0.7976 75.1950 69.9540 0.6839 0.8216 TS077 6
7 TS286 75.1950 69.6610 0.6839 0.7976 75.1950 69.9540 0.6839 0.8216 TS286 7
8 TS429 75.1950 66.4060 0.6839 0.5318 75.3910 70.5730 0.6993 0.8721 TS429 8
9 TS047 74.8050 61.9140 0.6534 0.1650 74.8050 61.9140 0.6534 0.1650 TS047 9
10 TS275 74.7070 68.1970 0.6457 0.6781 74.7070 68.1970 0.6457 0.6781 TS275 10
11 TS026 74.4140 67.7730 0.6228 0.6435 74.4140 67.7730 0.6228 0.6435 TS026 11
12 TS208 74.2190 70.1170 0.6075 0.8349 75.0980 70.1170 0.6763 0.8349 TS208 12
13 TS449 74.2190 69.8570 0.6075 0.8136 74.2190 69.8570 0.6075 0.8136 TS449 13
14 TS453 74.2190 69.8570 0.6075 0.8136 74.2190 69.8570 0.6075 0.8136 TS453 14
15 TS346 74.2190 69.8570 0.6075 0.8136 74.2190 69.8570 0.6075 0.8136 TS346 15
16 TS361 74.1210 67.8060 0.5999 0.6462 74.3160 69.7270 0.6151 0.8030 TS361 16
17 TS228 74.0230 70.5080 0.5922 0.8668 74.9020 71.7120 0.6610 0.9651 TS228 17
18 TS407 73.9260 63.5090 0.5846 0.2952 73.9260 63.5090 0.5846 0.2952 TS407 18
19 TS127 73.8280 64.9090 0.5769 0.4096 73.8280 66.8620 0.5769 0.5691 TS127 19
20 TS345 73.7300 67.0250 0.5692 0.5824 75.4880 67.2200 0.7068 0.5983 TS345 20
21 TS481 73.4380 69.7920 0.5464 0.8083 73.4380 69.7920 0.5464 0.8083 TS481 21
22 TS080 73.2420 66.1460 0.5311 0.5106 73.2420 66.2760 0.5311 0.5212 TS080 22
23 TS420 72.9490 59.2120 0.5081 -0.0557 72.9490 59.2120 0.5081 -0.0557 TS420 23
24 TS471 72.9490 59.2120 0.5081 -0.0557 72.9490 59.2120 0.5081 -0.0557 TS471 24
25 TS213 72.8520 66.8620 0.5005 0.5691 73.9260 68.0010 0.5846 0.6621 TS213 25
26 TS215 72.6560 67.7080 0.4852 0.6381 74.3160 68.0340 0.6151 0.6648 TS215 26
27 TS119 72.6560 67.7080 0.4852 0.6381 75.4880 70.5080 0.7068 0.8668 TS119 27
28 TS452 72.6560 65.2990 0.4852 0.4414 72.9490 66.6990 0.5081 0.5557 TS452 28
29 TS244 72.5590 62.3370 0.4776 0.1995 72.5590 66.3410 0.4776 0.5265 TS244 29
30 TS184 72.4610 64.2580 0.4699 0.3564 72.4610 64.2580 0.4699 0.3564 TS184 30
31 TS113 72.3630 67.7410 0.4623 0.6408 73.2420 68.1640 0.5311 0.6754 TS113 31
32 TS314 72.3630 66.9600 0.4623 0.5771 72.3630 66.9600 0.4623 0.5771 TS314 32
33 TS103 72.2660 68.0340 0.4547 0.6648 73.5350 68.0340 0.5540 0.6648 TS103 33
34 TS380 72.0700 65.7550 0.4393 0.4787 72.0700 65.7550 0.4393 0.4787 TS380 34
35 TS302 72.0700 64.9740 0.4393 0.4149 72.0700 65.2670 0.4393 0.4388 TS302 35
36 TS142 72.0700 64.9740 0.4393 0.4149 72.0700 65.2670 0.4393 0.4388 TS142 36
37 TS245 72.0700 62.6950 0.4393 0.2288 72.0700 62.6950 0.4393 0.2288 TS245 37
38 TS028 71.9730 65.7230 0.4317 0.4760 72.5590 67.7410 0.4776 0.6408 TS028 38
39 TS018 71.8750 66.6020 0.4241 0.5478 71.8750 66.6020 0.4241 0.5478 TS018 39
40 TS490 71.8750 59.1150 0.4241 -0.0636 71.8750 65.5920 0.4241 0.4653 TS490 40
41 TS002 71.6800 67.4480 0.4088 0.6169 73.8280 68.0340 0.5769 0.6648 TS002 41
42 TS319 71.6800 64.3230 0.4088 0.3617 72.3630 64.4210 0.4623 0.3697 TS319 42
43 TS173 71.6800 64.3230 0.4088 0.3617 71.6800 64.4860 0.4088 0.3750 TS173 43
44 TS056 71.6800 64.3230 0.4088 0.3617 75.7810 70.6380 0.7298 0.8774 TS056 44
45 TS273 71.6800 64.3230 0.4088 0.3617 71.6800 64.4210 0.4088 0.3697 TS273 45
46 TS291 71.5820 62.6630 0.4011 0.2261 73.3400 67.8060 0.5387 0.6462 TS291 46
47 TS104 71.4840 65.6250 0.3935 0.4680 71.4840 65.6250 0.3935 0.4680 TS104 47
48 TS001 71.3870 64.4210 0.3859 0.3697 71.6800 64.4210 0.4088 0.3697 TS001 48
49 TS296 71.3870 64.4210 0.3859 0.3697 71.6800 64.4210 0.4088 0.3697 TS296 49
50 TS094 71.2890 64.6480 0.3782 0.3882 76.6600 71.4190 0.7986 0.9412 TS094 50
51 TS428 71.2890 64.6480 0.3782 0.3882 71.5820 64.6480 0.4011 0.3882 TS428 51
52 TS102 70.9960 65.8530 0.3553 0.4867 70.9960 66.1780 0.3553 0.5132 TS102 52
53 TS418 70.8980 64.2580 0.3476 0.3564 71.6800 67.2530 0.4088 0.6010 TS418 53
54 TS037 70.8980 62.1740 0.3476 0.1862 70.9960 65.0070 0.3553 0.4176 TS037 54
55 TS174 70.8010 64.4210 0.3400 0.3697 70.8010 64.4210 0.3400 0.3697 TS174 55
56 TS171 70.8010 64.0950 0.3400 0.3431 70.8010 66.0160 0.3400 0.5000 TS171 56
57 TS409 70.8010 59.7660 0.3400 -0.0104 70.8010 62.7930 0.3400 0.2368 TS409 57
58 TS436 70.7030 65.2340 0.3323 0.4361 72.3630 65.2340 0.4623 0.4361 TS436 58
59 TS476 70.4100 59.7980 0.3094 -0.0078 70.4100 60.2860 0.3094 0.0320 TS476 59
60 TS307 70.1170 65.9510 0.2865 0.4947 70.3120 66.2760 0.3017 0.5212 TS307 60
61 AL285 69.7270 64.4530 0.2559 0.3723 71.9730 64.4530 0.4317 0.3723 AL285 61
62 TS457 69.6290 57.5520 0.2483 -0.1913 69.6290 59.6350 0.2483 -0.0211 TS457 62
63 TS366 69.1410 62.6950 0.2101 0.2288 70.1170 65.0070 0.2865 0.4176 TS366 63
64 TS063 69.1410 62.6950 0.2101 0.2288 70.1170 65.0070 0.2865 0.4176 TS063 64
65 TS395 68.8480 63.6390 0.1871 0.3058 68.8480 63.6390 0.1871 0.3058 TS395 65
66 TS218 68.6520 62.9230 0.1718 0.2474 68.8480 62.9880 0.1871 0.2527 TS218 66
67 TS214 68.5550 59.5700 0.1642 -0.0265 68.5550 59.7010 0.1642 -0.0158 TS214 67
68 TS117 68.2620 62.8580 0.1413 0.2421 68.2620 62.8580 0.1413 0.2421 TS117 68
69 TS165 67.2850 56.5430 0.0648 -0.2737 72.4610 65.2020 0.4699 0.4335 TS165 69
70 TS253 66.8950 62.1420 0.0343 0.1836 66.8950 62.7600 0.0343 0.2341 TS253 70
71 AL396 66.4060 62.0440 -0.0040 0.1756 66.4060 62.0440 -0.0040 0.1756 AL396 71
72 TS321 66.2110 57.6170 -0.0192 -0.1859 68.7500 61.9790 0.1795 0.1703 TS321 72
73 TS419 66.2110 57.6170 -0.0192 -0.1859 76.0740 71.5820 0.7527 0.9545 TS419 73
74 TS391 65.9180 60.6450 -0.0422 0.0613 65.9180 60.6450 -0.0422 0.0613 TS391 74
75 TS055 57.2270 45.3450 -0.7224 -1.1882 60.7420 54.6880 -0.4473 -0.4251 TS055 75
76 TS236 55.5660 46.9080 -0.8524 -1.0605 76.6600 71.4190 0.7986 0.9412 TS236 76
77 TS470 38.0860 33.5290 -2.2205 -2.1531 72.7540 65.3970 0.4929 0.4494 TS470 77
78 TS435 38.0860 33.4640 -2.2205 -2.1584 38.0860 33.5290 -2.2205 -2.1531 TS435 78
79 TS304 37.8910 34.1800 -2.2358 -2.1000 37.8910 34.1800 -2.2358 -2.1000 TS304 79
80 TS289 9.0820 8.2680 -4.4906 -4.2161 9.0820 8.2680 -4.4906 -4.2161 TS289 80
81 TS355 8.9840 8.4310 -4.4983 -4.2028 12.0120 11.2300 -4.2613 -3.9742 TS355 81
82 RANDOM 8.94 7.46 -4.5017 -4.2821 8.94 7.46 -4.5017 -4.2821 RANDOM 82
83 TS229 8.3980 6.6080 -4.5441 -4.3517 8.3980 7.1940 -4.5441 -4.3038 TS229 83
84 TS350 7.9100 6.9990 -4.5823 -4.3197 10.1560 8.7570 -4.4065 -4.1762 TS350 84
85 TS257 7.9100 6.9990 -4.5823 -4.3197 11.9140 9.9610 -4.2689 -4.0778 TS257 85
86 TS014 7.5200 6.9010 -4.6128 -4.3277 12.2070 9.2770 -4.2460 -4.1337 TS014 86
87 TS129 6.6410 5.5010 -4.6816 -4.4421 6.6410 5.5990 -4.6816 -4.4341 TS129 87
88 TS264 6.3480 5.3710 -4.7046 -4.4527 8.1050 7.4220 -4.5670 -4.2852 TS264 88
89 TS009             -4.5017 -4.2821             -4.5017 -4.2821 TS009 89
90 TS016             -4.5017 -4.2821             -4.5017 -4.2821 TS016 90
91 TS020             -4.5017 -4.2821             -4.5017 -4.2821 TS020 91
92 TS029             -4.5017 -4.2821             -4.5017 -4.2821 TS029 92
93 TS033             -4.5017 -4.2821             -4.5017 -4.2821 TS033 93
94 TS035             -4.5017 -4.2821             -4.5017 -4.2821 TS035 94
95 TS039             -4.5017 -4.2821             -4.5017 -4.2821 TS039 95
96 TS042             -4.5017 -4.2821             -4.5017 -4.2821 TS042 96
97 TS044             -4.5017 -4.2821             -4.5017 -4.2821 TS044 97
98 TS045             -4.5017 -4.2821             -4.5017 -4.2821 TS045 98
99 TS060             -4.5017 -4.2821             -4.5017 -4.2821 TS060 99
100 TS061             -4.5017 -4.2821             -4.5017 -4.2821 TS061 100
101 TS074             -4.5017 -4.2821             -4.5017 -4.2821 TS074 101
102 TS075             -4.5017 -4.2821             -4.5017 -4.2821 TS075 102
103 TS083             -4.5017 -4.2821             -4.5017 -4.2821 TS083 103
104 TS084             -4.5017 -4.2821             -4.5017 -4.2821 TS084 104
105 TS086             -4.5017 -4.2821             -4.5017 -4.2821 TS086 105
106 TS096             -4.5017 -4.2821             -4.5017 -4.2821 TS096 106
107 TS105             -4.5017 -4.2821             -4.5017 -4.2821 TS105 107
108 TS110             -4.5017 -4.2821             -4.5017 -4.2821 TS110 108
109 TS140             -4.5017 -4.2821             -4.5017 -4.2821 TS140 109
110 TS147             -4.5017 -4.2821             -4.5017 -4.2821 TS147 110
111 TS149             -4.5017 -4.2821             -4.5017 -4.2821 TS149 111
112 TS150             -4.5017 -4.2821             -4.5017 -4.2821 TS150 112
113 TS152             -4.5017 -4.2821             -4.5017 -4.2821 TS152 113
114 TS153             -4.5017 -4.2821             -4.5017 -4.2821 TS153 114
115 TS154             -4.5017 -4.2821             -4.5017 -4.2821 TS154 115
116 TS160             -4.5017 -4.2821             -4.5017 -4.2821 TS160 116
117 TS170             -4.5017 -4.2821             -4.5017 -4.2821 TS170 117
118 TS172             -4.5017 -4.2821             -4.5017 -4.2821 TS172 118
119 TS178             -4.5017 -4.2821             -4.5017 -4.2821 TS178 119
120 TS180             -4.5017 -4.2821             -4.5017 -4.2821 TS180 120
121 TS182             -4.5017 -4.2821             -4.5017 -4.2821 TS182 121
122 TS186             -4.5017 -4.2821             -4.5017 -4.2821 TS186 122
123 TS189             -4.5017 -4.2821             -4.5017 -4.2821 TS189 123
124 TS192             -4.5017 -4.2821             -4.5017 -4.2821 TS192 124
125 TS199             -4.5017 -4.2821             -4.5017 -4.2821 TS199 125
126 TS200             -4.5017 -4.2821             -4.5017 -4.2821 TS200 126
127 TS206             -4.5017 -4.2821             -4.5017 -4.2821 TS206 127
128 TS220             -4.5017 -4.2821             -4.5017 -4.2821 TS220 128
129 TS240             -4.5017 -4.2821             -4.5017 -4.2821 TS240 129
130 TS242             -4.5017 -4.2821             -4.5017 -4.2821 TS242 130
131 TS248             -4.5017 -4.2821             -4.5017 -4.2821 TS248 131
132 TS250             -4.5017 -4.2821             -4.5017 -4.2821 TS250 132
133 TS254             -4.5017 -4.2821             -4.5017 -4.2821 TS254 133
134 TS261             -4.5017 -4.2821             -4.5017 -4.2821 TS261 134
135 TS263             -4.5017 -4.2821             -4.5017 -4.2821 TS263 135
136 TS269             -4.5017 -4.2821             -4.5017 -4.2821 TS269 136
137 TS278             -4.5017 -4.2821             -4.5017 -4.2821 TS278 137
138 TS279             -4.5017 -4.2821             -4.5017 -4.2821 TS279 138
139 TS282             -4.5017 -4.2821             -4.5017 -4.2821 TS282 139
140 TS295             -4.5017 -4.2821             -4.5017 -4.2821 TS295 140
141 TS297             -4.5017 -4.2821             -4.5017 -4.2821 TS297 141
142 TS299             -4.5017 -4.2821             -4.5017 -4.2821 TS299 142
143 TS300             -4.5017 -4.2821             -4.5017 -4.2821 TS300 143
144 TS301             -4.5017 -4.2821             -4.5017 -4.2821 TS301 144
145 TS311             -4.5017 -4.2821             -4.5017 -4.2821 TS311 145
146 TS316             -4.5017 -4.2821             -4.5017 -4.2821 TS316 146
147 TS322             -4.5017 -4.2821             -4.5017 -4.2821 TS322 147
148 TS324             -4.5017 -4.2821             -4.5017 -4.2821 TS324 148
149 TS328             -4.5017 -4.2821             -4.5017 -4.2821 TS328 149
150 TS330             -4.5017 -4.2821             -4.5017 -4.2821 TS330 150
151 TS331             -4.5017 -4.2821             -4.5017 -4.2821 TS331 151
152 TS333             -4.5017 -4.2821             -4.5017 -4.2821 TS333 152
153 TS336             -4.5017 -4.2821             -4.5017 -4.2821 TS336 153
154 TS347             -4.5017 -4.2821             -4.5017 -4.2821 TS347 154
155 TS353             -4.5017 -4.2821             -4.5017 -4.2821 TS353 155
156 TS358             -4.5017 -4.2821             -4.5017 -4.2821 TS358 156
157 TS360             -4.5017 -4.2821             -4.5017 -4.2821 TS360 157
158 TS362             -4.5017 -4.2821             -4.5017 -4.2821 TS362 158
159 TS365             -4.5017 -4.2821             -4.5017 -4.2821 TS365 159
160 TS373             -4.5017 -4.2821             -4.5017 -4.2821 TS373 160
161 TS382             -4.5017 -4.2821             -4.5017 -4.2821 TS382 161
162 TS386             -4.5017 -4.2821             -4.5017 -4.2821 TS386 162
163 TS399             -4.5017 -4.2821             -4.5017 -4.2821 TS399 163
164 TS400             -4.5017 -4.2821             -4.5017 -4.2821 TS400 164
165 TS402             -4.5017 -4.2821             -4.5017 -4.2821 TS402 165
166 TS403             -4.5017 -4.2821             -4.5017 -4.2821 TS403 166
167 TS408             -4.5017 -4.2821             -4.5017 -4.2821 TS408 167
168 TS423             -4.5017 -4.2821             -4.5017 -4.2821 TS423 168
169 TS424             -4.5017 -4.2821             -4.5017 -4.2821 TS424 169
170 TS433             -4.5017 -4.2821             -4.5017 -4.2821 TS433 170
171 TS439             -4.5017 -4.2821             -4.5017 -4.2821 TS439 171
172 TS444             -4.5017 -4.2821             -4.5017 -4.2821 TS444 172
173 TS447             -4.5017 -4.2821             -4.5017 -4.2821 TS447 173
174 TS450             -4.5017 -4.2821             -4.5017 -4.2821 TS450 174
175 TS458             -4.5017 -4.2821             -4.5017 -4.2821 TS458 175
176 TS461             -4.5017 -4.2821             -4.5017 -4.2821 TS461 176
177 TS477             -4.5017 -4.2821             -4.5017 -4.2821 TS477 177
178 TS484             -4.5017 -4.2821             -4.5017 -4.2821 TS484 178