T0558

Targets
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519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
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563 564 565 566
567 568 569 570
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575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
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595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
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619 620 621 622
623 624 625 626
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631 632 633 634
635 636 637 638
639 640 641 642
643      

T0558

ZP_01960044.1 from Bacteroides caccaeY

Target type: Human/Server

Target sequence:

>T0558 ZP_01960044.1, Bacteroides caccaeY, 294 residues
MKNFILLVALFLVAPFAQGSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTICPIRE

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3no2

Jmol of T0558 structure : 3no2

PyMOL of T0558

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0558A21-29421-294

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

7-bladed beta-propeller, WD40 repeat-like.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1gxr_A | PyMOL of 1gxr A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

The best Pfam hit is 3-carboxy-cis,cis-muconate lactonizing enzyme (PF10282), but there are several other hits also have high score, needs more study.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0558 T0558 T0558 T0558
First score First Z-score Best score Best Z-score
1 TS207 56.0220 45.1340 2.5025 3.2110 56.0220 45.1340 2.5025 3.2110 TS207 1
2 TS449 53.9230 42.0620 2.1292 2.4794 53.9230 42.0620 2.1292 2.4794 TS449 2
3 TS453 53.9230 42.0620 2.1292 2.4794 53.9230 42.0620 2.1292 2.4794 TS453 3
4 TS346 53.9230 42.0620 2.1292 2.4794 53.9230 42.0620 2.1292 2.4794 TS346 4
5 TS481 50.9120 37.4090 1.5936 1.3712 51.0040 37.6820 1.6100 1.4362 TS481 5
6 TS033 49.7260 38.9290 1.3827 1.7332 49.7260 38.9290 1.3827 1.7332 TS033 6
7 TS218 49.3610 39.6900 1.3178 1.9145 49.9090 39.6900 1.4152 1.9145 TS218 7
8 TS117 48.5400 38.7470 1.1717 1.6899 49.0880 39.2940 1.2692 1.8202 TS117 8
9 TS236 48.5400 37.2260 1.1717 1.3276 49.9090 38.9290 1.4152 1.7332 TS236 9
10 TS297 48.4490 38.7170 1.1556 1.6827 48.4490 38.7170 1.1556 1.6827 TS297 10
11 TS304 48.4490 38.2910 1.1556 1.5813 48.4490 38.2910 1.1556 1.5813 TS304 11
12 TS114 48.1750 36.4360 1.1068 1.1395 49.9090 38.9290 1.4152 1.7332 TS114 12
13 TS240 47.7190 34.2760 1.0257 0.6251 47.7190 34.2760 1.0257 0.6251 TS240 13
14 TS002 47.7190 34.2760 1.0257 0.6251 49.1790 36.5570 1.2854 1.1683 TS002 14
15 TS104 47.6280 36.4360 1.0095 1.1395 47.6280 36.4360 1.0095 1.1395 TS104 15
16 TS476 47.5360 34.1240 0.9932 0.5889 49.1790 38.7470 1.2854 1.6899 TS476 16
17 TS016 47.4450 36.1920 0.9770 1.0814 47.5360 37.7430 0.9932 1.4508 TS016 17
18 TS186 47.2630 33.8200 0.9446 0.5165 47.2630 35.7970 0.9446 0.9873 TS186 18
19 TS214 47.0800 33.2420 0.9121 0.3788 47.3540 35.5540 0.9608 0.9294 TS214 19
20 TS213 46.4420 34.3980 0.7986 0.6541 46.4420 34.3980 0.7986 0.6541 TS213 20
21 TS088 46.2590 34.4590 0.7660 0.6686 49.4530 38.3520 1.3341 1.5958 TS088 21
22 TS276 46.1680 37.3180 0.7498 1.3495 46.1680 37.3180 0.7498 1.3495 TS276 22
23 TS286 46.1680 37.3180 0.7498 1.3495 46.1680 37.3180 0.7498 1.3495 TS286 23
24 TS419 46.0770 35.5840 0.7337 0.9366 47.9930 37.8040 1.0744 1.4653 TS419 24
25 TS166 46.0770 35.5840 0.7337 0.9366 47.9930 37.8040 1.0744 1.4653 TS166 25
26 TS302 45.9850 34.7020 0.7173 0.7265 48.8140 36.7700 1.2205 1.2190 TS302 26
27 TS142 45.9850 34.7020 0.7173 0.7265 48.8140 36.7700 1.2205 1.2190 TS142 27
28 TS220 45.9850 34.7020 0.7173 0.7265 46.2590 35.7660 0.7660 0.9799 TS220 28
29 TS447 45.9850 34.7020 0.7173 0.7265 46.2590 35.7660 0.7660 0.9799 TS447 29
30 TS386 45.5290 33.6980 0.6362 0.4874 45.8940 34.1550 0.7011 0.5962 TS386 30
31 TS105 45.2550 33.7590 0.5874 0.5019 45.6200 34.2460 0.6524 0.6179 TS105 31
32 TS096 44.7990 32.1170 0.5063 0.1109 53.9230 40.5720 2.1292 2.1245 TS096 32
33 TS094 44.7080 32.9080 0.4902 0.2992 44.7080 32.9080 0.4902 0.2992 TS094 33
34 TS380 44.5260 33.1510 0.4578 0.3571 46.6240 35.9790 0.8309 1.0306 TS380 34
35 TS470 44.5260 32.5430 0.4578 0.2123 44.7080 32.9080 0.4902 0.2992 TS470 35
36 TS407 44.5260 32.5430 0.4578 0.2123 44.6170 33.1510 0.4740 0.3571 TS407 36
37 TS428 44.5260 32.5430 0.4578 0.2123 47.4450 36.4660 0.9770 1.1466 TS428 37
38 TS110 44.5260 32.5430 0.4578 0.2123 44.5260 32.5430 0.4578 0.2123 TS110 38
39 TS366 44.4340 36.2530 0.4414 1.0959 45.8030 36.4960 0.6849 1.1538 TS366 39
40 TS063 44.4340 36.2530 0.4414 1.0959 45.8030 36.4960 0.6849 1.1538 TS063 40
41 TS077 44.4340 32.9990 0.4414 0.3209 44.4340 32.9990 0.4414 0.3209 TS077 41
42 TS424 44.3430 34.0630 0.4252 0.5743 47.3540 37.6820 0.9608 1.4362 TS424 42
43 TS215 44.3430 32.4820 0.4252 0.1978 44.3430 32.4820 0.4252 0.1978 TS215 43
44 TS080 44.3430 32.4820 0.4252 0.1978 44.3430 32.4820 0.4252 0.1978 TS080 44
45 TS399 44.3430 32.4820 0.4252 0.1978 44.5260 33.1510 0.4578 0.3571 TS399 45
46 TS400 44.1610 33.2730 0.3929 0.3862 45.8030 33.6070 0.6849 0.4657 TS400 46
47 TS113 44.1610 32.8470 0.3929 0.2847 44.4340 33.3030 0.4414 0.3933 TS113 47
48 TS429 44.1610 32.7550 0.3929 0.2628 45.1640 32.9680 0.5713 0.3135 TS429 48
49 TS418 44.0690 32.9990 0.3765 0.3209 48.8140 36.8610 1.2205 1.2407 TS418 49
50 TS490 43.7960 32.8470 0.3279 0.2847 43.7960 32.8470 0.3279 0.2847 TS490 50
51 TS037 43.7960 32.4820 0.3279 0.1978 47.4450 35.0970 0.9770 0.8206 TS037 51
52 TS047 43.7040 32.9990 0.3116 0.3209 43.7040 32.9990 0.3116 0.3209 TS047 52
53 TS361 43.6130 32.4210 0.2954 0.1833 43.6130 32.6640 0.2954 0.2411 TS361 53
54 TS119 43.5220 31.6000 0.2792 -0.0123 43.5220 32.0560 0.2792 0.0963 TS119 54
55 TS345 43.4310 34.2460 0.2630 0.6179 45.1640 35.0670 0.5713 0.8134 TS345 55
56 TS299 43.4310 32.6340 0.2630 0.2340 43.7960 33.3030 0.3279 0.3933 TS299 56
57 TS253 43.4310 32.4820 0.2630 0.1978 44.1610 32.4820 0.3929 0.1978 TS253 57
58 TS300 43.3390 33.0600 0.2467 0.3354 46.7150 33.4550 0.8471 0.4295 TS300 58
59 TS321 43.3390 33.0600 0.2467 0.3354 43.3390 33.0600 0.2467 0.3354 TS321 59
60 TS001 43.2480 33.6370 0.2305 0.4729 43.9780 33.6980 0.3603 0.4874 TS001 60
61 TS103 43.1570 30.4440 0.2143 -0.2876 43.6130 33.1510 0.2954 0.3571 TS103 61
62 TS208 42.8830 32.1170 0.1655 0.1109 44.2520 32.7250 0.4090 0.2557 TS208 62
63 TS458 42.8830 30.9610 0.1655 -0.1645 46.0770 34.7930 0.7337 0.7482 TS458 63
64 TS028 42.7920 34.3980 0.1494 0.6541 45.5290 37.0130 0.6362 1.2769 TS028 64
65 TS102 42.7920 30.6270 0.1494 -0.2440 43.3390 31.8130 0.2467 0.0385 TS102 65
66 TS307 42.7920 30.5660 0.1494 -0.2585 42.7920 30.5660 0.1494 -0.2585 TS307 66
67 TS127 42.7010 30.5350 0.1332 -0.2659 42.9740 32.2990 0.1817 0.1542 TS127 67
68 TS365 42.5180 32.1170 0.1006 0.1109 42.5180 32.1170 0.1006 0.1109 TS365 68
69 TS319 42.2450 32.3300 0.0521 0.1616 42.2450 32.3300 0.0521 0.1616 TS319 69
70 TS301 42.2450 32.3300 0.0521 0.1616 42.2450 32.3300 0.0521 0.1616 TS301 70
71 TS056 42.2450 32.3300 0.0521 0.1616 44.7080 32.9080 0.4902 0.2992 TS056 71
72 TS273 42.2450 32.3300 0.0521 0.1616 42.9740 32.3300 0.1817 0.1616 TS273 72
73 TS009 42.0620 30.6270 0.0195 -0.2440 42.0620 30.6270 0.0195 -0.2440 TS009 73
74 TS420 41.9710 30.3530 0.0033 -0.3093 43.7040 31.7820 0.3116 0.0311 TS420 74
75 TS471 41.9710 30.3530 0.0033 -0.3093 43.7040 31.7820 0.3116 0.0311 TS471 75
76 TS165 41.8800 32.2690 -0.0129 0.1471 42.8830 32.2690 0.1655 0.1471 TS165 76
77 TS391 41.8800 31.6000 -0.0129 -0.0123 41.8800 31.6000 -0.0129 -0.0123 TS391 77
78 TS324 41.7880 31.8730 -0.0292 0.0528 41.7880 31.8730 -0.0292 0.0528 TS324 78
79 TS055 41.6970 30.8700 -0.0454 -0.1861 45.9850 35.7060 0.7173 0.9656 TS055 79
80 TS360 41.6970 29.9570 -0.0454 -0.4036 41.8800 32.0260 -0.0129 0.0892 TS360 80
81 TS402 41.6970 28.2540 -0.0454 -0.8092 43.7040 32.8770 0.3116 0.2919 TS402 81
82 TS061 41.6060 30.5960 -0.0616 -0.2514 41.6060 30.5960 -0.0616 -0.2514 TS061 82
83 TS435 41.5150 31.0830 -0.0778 -0.1354 45.5290 35.9180 0.6362 1.0161 TS435 83
84 TS147 41.3320 30.3220 -0.1103 -0.3166 41.9710 31.4480 0.0033 -0.0485 TS147 84
85 TS484 41.2410 30.4740 -0.1265 -0.2804 48.5400 39.7810 1.1717 1.9361 TS484 85
86 TS409 41.1500 30.6270 -0.1427 -0.2440 48.3580 35.6450 1.1394 0.9511 TS409 86
87 TS275 41.1500 30.5960 -0.1427 -0.2514 42.3360 33.0290 0.0683 0.3281 TS275 87
88 TS423 41.1500 29.5320 -0.1427 -0.5048 41.7880 31.6000 -0.0292 -0.0123 TS423 88
89 TS457 40.8760 30.1700 -0.1914 -0.3528 46.3500 33.0900 0.7822 0.3426 TS457 89
90 TS408 40.8760 28.4370 -0.1914 -0.7656 41.3320 29.1970 -0.1103 -0.5846 TS408 90
91 TS382 40.6930 30.4140 -0.2240 -0.2947 45.9850 36.6180 0.7173 1.1828 TS382 91
92 TS174 40.6930 29.5620 -0.2240 -0.4976 40.6930 29.5620 -0.2240 -0.4976 TS174 92
93 TS242 40.6020 30.0490 -0.2402 -0.3817 40.8760 30.3830 -0.1914 -0.3021 TS242 93
94 TS452 40.6020 30.0490 -0.2402 -0.3817 40.7850 30.2920 -0.2076 -0.3238 TS452 94
95 TS199 40.5110 31.6300 -0.2564 -0.0051 40.5110 31.6300 -0.2564 -0.0051 TS199 95
96 TS172 40.4200 30.9310 -0.2725 -0.1716 41.6970 32.4510 -0.0454 0.1904 TS172 96
97 TS436 40.4200 29.8050 -0.2725 -0.4398 40.6020 30.4440 -0.2402 -0.2876 TS436 97
98 AL396 40.3280 30.8390 -0.2889 -0.1935 40.6020 30.8390 -0.2402 -0.1935 AL396 98
99 TS035 40.2370 31.5390 -0.3051 -0.0268 40.2370 31.5390 -0.3051 -0.0268 TS035 99
100 TS296 40.1460 29.5010 -0.3213 -0.5122 50.0910 38.5340 1.4476 1.6391 TS296 100
101 TS477 39.5070 29.5320 -0.4349 -0.5048 39.7810 31.6000 -0.3862 -0.0123 TS477 101
102 TS353 38.9600 32.3910 -0.5322 0.1761 43.1570 32.7860 0.2143 0.2702 TS353 102
103 TS314 38.8690 29.0750 -0.5484 -0.6136 38.8690 29.0750 -0.5484 -0.6136 TS314 103
104 TS245 38.7770 29.2880 -0.5648 -0.5629 38.7770 29.2880 -0.5648 -0.5629 TS245 104
105 TS029 38.6860 30.8700 -0.5810 -0.1861 38.6860 30.8700 -0.5810 -0.1861 TS029 105
106 TS244 38.6860 29.3190 -0.5810 -0.5555 42.9740 32.5120 0.1817 0.2049 TS244 106
107 TS395 37.0440 28.6190 -0.8730 -0.7222 38.6860 29.1970 -0.5810 -0.5846 TS395 107
108 TS018 36.7700 26.8550 -0.9218 -1.1423 37.5000 29.2270 -0.7919 -0.5774 TS018 108
109 TS045 36.5880 30.5050 -0.9541 -0.2731 36.5880 30.5050 -0.9541 -0.2731 TS045 109
110 TS311 35.9490 24.9390 -1.0678 -1.5987 35.9490 24.9390 -1.0678 -1.5987 TS311 110
111 AL285 35.8580 24.4220 -1.0840 -1.7218 43.7040 34.1240 0.3116 0.5889 AL285 111
112 TS295 34.9450 27.0990 -1.2464 -1.0842 48.6310 36.9530 1.1879 1.2626 TS295 112
113 TS173 34.0330 26.5510 -1.4086 -1.2147 41.2410 31.4170 -0.1265 -0.0559 TS173 113
114 TS129 33.7590 25.3650 -1.4573 -1.4972 37.1350 29.2880 -0.8568 -0.5629 TS129 114
115 TS291 33.5770 24.8480 -1.4897 -1.6203 36.7700 28.4980 -0.9218 -0.7510 TS291 115
116 TS350 32.3910 27.3720 -1.7006 -1.0192 32.7550 27.7680 -1.6359 -0.9249 TS350 116
117 TS450 31.8430 24.5440 -1.7981 -1.6927 31.8430 24.5440 -1.7981 -1.6927 TS450 117
118 TS171 30.8390 23.9050 -1.9767 -1.8449 46.7150 35.9490 0.8471 1.0235 TS171 118
119 TS026 30.2920 25.2430 -2.0740 -1.5263 43.8870 35.4930 0.3441 0.9149 TS026 119
120 TS328 29.0150 21.2290 -2.3011 -2.4822 29.0150 21.2290 -2.3011 -2.4822 TS328 120
121 TS403 27.3720 23.6310 -2.5933 -1.9102 29.0150 24.4220 -2.3011 -1.7218 TS403 121
122 TS248 24.3610 21.8070 -3.1289 -2.3446 24.3610 21.8370 -3.1289 -2.3374 TS248 122
123 TS316 19.0690 17.6090 -4.0702 -3.3444 22.4450 18.5830 -3.4697 -3.1124 TS316 123
124 TS257 16.6970 12.6820 -4.4921 -4.5178 16.6970 13.5040 -4.4921 -4.3221 TS257 124
125 TS042 16.3320 13.8990 -4.5570 -4.2280 22.4450 18.5830 -3.4697 -3.1124 TS042 125
126 TS289 13.0470 10.7360 -5.1413 -4.9813 13.0470 10.7360 -5.1413 -4.9813 TS289 126
127 RANDOM 12.00 10.01 -5.3275 -5.1542 12.00 10.01 -5.3275 -5.1542 RANDOM 127
128 TS084 11.5880 10.8270 -5.4008 -4.9596 12.7740 10.8270 -5.1898 -4.9596 TS084 128
129 TS200 11.0400 9.6410 -5.4983 -5.2421 11.0400 9.6410 -5.4983 -5.2421 TS200 129
130 TS355 10.4930 9.0330 -5.5955 -5.3869 11.5880 9.6110 -5.4008 -5.2492 TS355 130
131 TS206 10.4010 9.9760 -5.6119 -5.1623 10.4010 9.9760 -5.6119 -5.1623 TS206 131
132 TS229 9.2150 8.3330 -5.8229 -5.5536 9.2150 8.3330 -5.8229 -5.5536 TS229 132
133 TS278 8.4850 7.9380 -5.9527 -5.6477 8.4850 7.9380 -5.9527 -5.6477 TS278 133
134 TS264 8.3030 7.5730 -5.9851 -5.7346 8.3030 7.5730 -5.9851 -5.7346 TS264 134
135 TS014 7.7550 6.6000 -6.0825 -5.9663 10.0360 7.9680 -5.6768 -5.6405 TS014 135
136 TS333 6.4780 5.2920 -6.3097 -6.2778 7.4820 6.8130 -6.1311 -5.9156 TS333 136
137 TS020             -5.3275 -5.1542             -5.3275 -5.1542 TS020 137
138 TS039             -5.3275 -5.1542             -5.3275 -5.1542 TS039 138
139 TS044             -5.3275 -5.1542             -5.3275 -5.1542 TS044 139
140 TS060             -5.3275 -5.1542             -5.3275 -5.1542 TS060 140
141 TS074             -5.3275 -5.1542             -5.3275 -5.1542 TS074 141
142 TS075             -5.3275 -5.1542             -5.3275 -5.1542 TS075 142
143 TS083             -5.3275 -5.1542             -5.3275 -5.1542 TS083 143
144 TS086             -5.3275 -5.1542             -5.3275 -5.1542 TS086 144
145 TS140             -5.3275 -5.1542             -5.3275 -5.1542 TS140 145
146 TS149             -5.3275 -5.1542             -5.3275 -5.1542 TS149 146
147 TS150             -5.3275 -5.1542             -5.3275 -5.1542 TS150 147
148 TS152             -5.3275 -5.1542             -5.3275 -5.1542 TS152 148
149 TS153             -5.3275 -5.1542             -5.3275 -5.1542 TS153 149
150 TS154             -5.3275 -5.1542             -5.3275 -5.1542 TS154 150
151 TS160             -5.3275 -5.1542             -5.3275 -5.1542 TS160 151
152 TS170             -5.3275 -5.1542             -5.3275 -5.1542 TS170 152
153 TS178             -5.3275 -5.1542             -5.3275 -5.1542 TS178 153
154 TS180             -5.3275 -5.1542             -5.3275 -5.1542 TS180 154
155 TS182             -5.3275 -5.1542             -5.3275 -5.1542 TS182 155
156 TS184             -5.3275 -5.1542             -5.3275 -5.1542 TS184 156
157 TS189             -5.3275 -5.1542             -5.3275 -5.1542 TS189 157
158 TS192             -5.3275 -5.1542             -5.3275 -5.1542 TS192 158
159 TS228             -5.3275 -5.1542             -5.3275 -5.1542 TS228 159
160 TS250             -5.3275 -5.1542             -5.3275 -5.1542 TS250 160
161 TS254             -5.3275 -5.1542             -5.3275 -5.1542 TS254 161
162 TS261             -5.3275 -5.1542             -5.3275 -5.1542 TS261 162
163 TS263             -5.3275 -5.1542             -5.3275 -5.1542 TS263 163
164 TS269             -5.3275 -5.1542             -5.3275 -5.1542 TS269 164
165 TS279             -5.3275 -5.1542             -5.3275 -5.1542 TS279 165
166 TS282             -5.3275 -5.1542             -5.3275 -5.1542 TS282 166
167 TS322             -5.3275 -5.1542             -5.3275 -5.1542 TS322 167
168 TS330             -5.3275 -5.1542             -5.3275 -5.1542 TS330 168
169 TS331             -5.3275 -5.1542             -5.3275 -5.1542 TS331 169
170 TS336             -5.3275 -5.1542             -5.3275 -5.1542 TS336 170
171 TS347             -5.3275 -5.1542             -5.3275 -5.1542 TS347 171
172 TS358             -5.3275 -5.1542             -5.3275 -5.1542 TS358 172
173 TS362             -5.3275 -5.1542             -5.3275 -5.1542 TS362 173
174 TS373             -5.3275 -5.1542             -5.3275 -5.1542 TS373 174
175 TS433             -5.3275 -5.1542             -5.3275 -5.1542 TS433 175
176 TS439             -5.3275 -5.1542             -5.3275 -5.1542 TS439 176
177 TS444             -5.3275 -5.1542             -5.3275 -5.1542 TS444 177
178 TS461             -5.3275 -5.1542             -5.3275 -5.1542 TS461 178