T0643

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
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619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0643

3NZL from Homo sapiens

Target type: Human/Server

Target sequence:

>T0643 3NZL, Homo sapiens, 83 residues
MGHHHHHHSHMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKTKDMM

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: NESG
PDB ID: 3nzl

Jmol of T0643 structure : 3nzl

PyMOL of T0643

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0643A7-797-79

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

It might be lambda repressor-like DNA-binding domains, core: 4 helices; folded leaf, closed

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2ict_A | PyMOL of 2ict A, prob is kind of low (88.3).

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No significant match to Pfam

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0643 T0643 T0643 T0643
First score First Z-score Best score Best Z-score
1 TS365 67.1230 62.5570 1.9791 2.6494 67.1230 62.5570 1.9791 2.6494 TS365 1
2 TS399 66.7810 61.0730 1.9459 2.4770 66.7810 61.0730 1.9459 2.4770 TS399 2
3 TS172 66.0960 58.5620 1.8794 2.1853 66.0960 58.5620 1.8794 2.1853 TS172 3
4 TS450 63.0140 53.4250 1.5801 1.5884 63.0140 53.4250 1.5801 1.5884 TS450 4
5 TS257 62.6710 56.5070 1.5467 1.9465 62.6710 56.5070 1.5467 1.9465 TS257 5
6 TS457 62.3290 52.7400 1.5135 1.5088 65.0680 57.7630 1.7795 2.0924 TS457 6
7 TS096 61.9860 54.9090 1.4802 1.7608 63.6990 56.3930 1.6466 1.9332 TS096 7
8 TS295 61.9860 53.3110 1.4802 1.5752 61.9860 53.3110 1.4802 1.5752 TS295 8
9 TS016 60.9590 52.5110 1.3805 1.4822 61.6440 53.4250 1.4470 1.5884 TS016 9
10 TS402 60.6160 54.2240 1.3472 1.6812 62.3290 59.2470 1.5135 2.2648 TS402 10
11 TS240 59.5890 50.4570 1.2474 1.2436 59.5890 50.4570 1.2474 1.2436 TS240 11
12 TS428 59.5890 50.4570 1.2474 1.2436 61.3010 53.1960 1.4137 1.5618 TS428 12
13 TS033 59.5890 50.4570 1.2474 1.2436 59.5890 50.4570 1.2474 1.2436 TS033 13
14 TS395 59.5890 49.0870 1.2474 1.0844 59.5890 49.0870 1.2474 1.0844 TS395 14
15 TS088 59.2470 51.4840 1.2142 1.3629 60.6160 54.6800 1.3472 1.7342 TS088 15
16 TS037 59.2470 51.0270 1.2142 1.3098 59.5890 51.8260 1.2474 1.4026 TS037 16
17 TS113 59.2470 50.7990 1.2142 1.2833 61.3010 53.3110 1.4137 1.5752 TS113 17
18 TS380 59.2470 49.6580 1.2142 1.1507 59.2470 49.6580 1.2142 1.1507 TS380 18
19 TS291 58.9040 49.0870 1.1809 1.0844 58.9040 49.0870 1.1809 1.0844 TS291 19
20 TS170 58.9040 44.5210 1.1809 0.5539 58.9040 44.5210 1.1809 0.5539 TS170 20
21 TS490 58.5620 49.6580 1.1477 1.1507 61.6440 52.7400 1.4470 1.5088 TS490 21
22 TS253 58.2190 48.8580 1.1144 1.0578 61.9860 54.7950 1.4802 1.7476 TS253 22
23 TS110 58.2190 48.1740 1.1144 0.9783 58.2190 48.1740 1.1144 0.9783 TS110 23
24 TS386 58.2190 47.4890 1.1144 0.8987 60.9590 51.3700 1.3805 1.3496 TS386 24
25 TS429 57.8770 50.5710 1.0811 1.2568 62.3290 53.8810 1.5135 1.6414 TS429 25
26 TS360 57.8770 44.6350 1.0811 0.5671 57.8770 44.6350 1.0811 0.5671 TS360 26
27 TS400 57.5340 50.2280 1.0478 1.2170 57.5340 50.2280 1.0478 1.2170 TS400 27
28 TS174 57.1920 48.1740 1.0146 0.9783 57.1920 48.1740 1.0146 0.9783 TS174 28
29 TS218 57.1920 48.0590 1.0146 0.9650 58.2190 51.5980 1.1144 1.3761 TS218 29
30 TS347 56.5070 47.3740 0.9481 0.8854 56.5070 47.3740 0.9481 0.8854 TS347 30
31 TS470 55.8220 48.5160 0.8816 1.0180 61.3010 53.1960 1.4137 1.5618 TS470 31
32 TS419 55.8220 48.5160 0.8816 1.0180 59.5890 50.4570 1.2474 1.2436 TS419 32
33 TS103 55.8220 48.5160 0.8816 1.0180 55.8220 48.5160 0.8816 1.0180 TS103 33
34 TS321 54.1100 47.2600 0.7153 0.8721 54.4520 47.9450 0.7485 0.9517 TS321 34
35 TS242 54.1100 45.4340 0.7153 0.6600 54.4520 46.2330 0.7485 0.7528 TS242 35
36 TS102 54.1100 45.2050 0.7153 0.6334 54.7950 45.5480 0.7818 0.6732 TS102 36
37 TS042 54.1100 44.7490 0.7153 0.5804 54.1100 44.8630 0.7153 0.5936 TS042 37
38 TS423 54.1100 42.0090 0.7153 0.2620 56.8490 47.9450 0.9813 0.9517 TS423 38
39 TS192 54.1100 41.5530 0.7153 0.2090 54.1100 41.5530 0.7153 0.2090 TS192 39
40 TS458 53.7670 46.4610 0.6820 0.7793 56.5070 47.1460 0.9481 0.8589 TS458 40
41 TS002 53.7670 46.2330 0.6820 0.7528 53.7670 50.3420 0.6820 1.2302 TS002 41
42 TS418 53.7670 45.5480 0.6820 0.6732 55.8220 45.5480 0.8816 0.6732 TS418 42
43 TS408 53.4250 50.0000 0.6488 1.1905 53.4250 50.0000 0.6488 1.1905 TS408 43
44 TS316 53.4250 45.6620 0.6488 0.6865 53.4250 45.6620 0.6488 0.6865 TS316 44
45 TS080 53.0820 44.6350 0.6154 0.5671 53.7670 50.3420 0.6820 1.2302 TS080 45
46 TS119 53.0820 44.6350 0.6154 0.5671 54.1100 49.7720 0.7153 1.1640 TS119 46
47 TS424 53.0820 34.1320 0.6154 -0.6532 63.6990 52.9680 1.6466 1.5353 TS424 47
48 TS391 52.7400 44.9770 0.5822 0.6069 52.7400 44.9770 0.5822 0.6069 TS391 48
49 TS407 52.7400 43.3790 0.5822 0.4212 52.7400 43.3790 0.5822 0.4212 TS407 49
50 TS127 52.7400 43.1510 0.5822 0.3947 52.7400 43.1510 0.5822 0.3947 TS127 50
51 TS319 51.7120 46.9180 0.4824 0.8324 52.3970 46.9180 0.5489 0.8324 TS319 51
52 TS056 51.7120 46.9180 0.4824 0.8324 54.7950 50.7990 0.7818 1.2833 TS056 52
53 TS300 51.7120 46.8040 0.4824 0.8191 62.3290 52.7400 1.5135 1.5088 TS300 53
54 TS207 51.7120 46.0050 0.4824 0.7263 53.7670 46.0050 0.6820 0.7263 TS207 54
55 TS276 51.7120 40.0680 0.4824 0.0365 51.7120 40.0680 0.4824 0.0365 TS276 55
56 TS094 51.7120 40.0680 0.4824 0.0365 52.3970 46.2330 0.5489 0.7528 TS094 56
57 TS299 51.3700 34.4750 0.4492 -0.6133 54.7950 43.1510 0.7818 0.3947 TS299 57
58 TS477 51.0270 43.4930 0.4159 0.4344 54.4520 46.4610 0.7485 0.7793 TS477 58
59 TS297 51.0270 38.4700 0.4159 -0.1492 52.7400 43.3790 0.5822 0.4212 TS297 59
60 TS060 50.6850 41.5530 0.3827 0.2090 60.9590 53.1960 1.3805 1.5618 TS060 60
61 TS361 50.6850 41.3240 0.3827 0.1824 51.3700 41.8950 0.4492 0.2488 TS361 61
62 TS208 50.6850 39.4980 0.3827 -0.0297 53.0820 42.6940 0.6154 0.3416 TS208 62
63 TS035 50.3420 41.4380 0.3493 0.1957 50.3420 41.4380 0.3493 0.1957 TS035 63
64 TS077 50.3420 40.2970 0.3493 0.0631 50.3420 40.2970 0.3493 0.0631 TS077 64
65 TS286 50.3420 40.2970 0.3493 0.0631 50.3420 40.2970 0.3493 0.0631 TS286 65
66 TS166 50.0000 42.0090 0.3161 0.2620 62.6710 53.3110 1.5467 1.5752 TS166 66
67 TS409 50.0000 40.1830 0.3161 0.0499 51.3700 40.1830 0.4492 0.0499 TS409 67
68 TS304 49.6580 40.5250 0.2829 0.0896 51.0270 40.5250 0.4159 0.0896 TS304 68
69 TS275 49.3150 40.8680 0.2496 0.1295 52.3970 46.0050 0.5489 0.7263 TS275 69
70 TS273 49.3150 40.8680 0.2496 0.1295 52.3970 46.9180 0.5489 0.8324 TS273 70
71 TS366 49.3150 39.9540 0.2496 0.0233 53.0820 45.3200 0.6154 0.6467 TS366 71
72 TS063 49.3150 39.9540 0.2496 0.0233 53.0820 45.3200 0.6154 0.6467 TS063 72
73 TS213 48.9730 39.8400 0.2164 0.0100 53.7670 50.3420 0.6820 1.2302 TS213 73
74 TS282 48.6300 40.8680 0.1831 0.1295 48.6300 40.8680 0.1831 0.1295 TS282 74
75 TS165 48.6300 39.0410 0.1831 -0.0828 48.6300 42.6940 0.1831 0.3416 TS165 75
76 TS307 48.2880 40.7530 0.1499 0.1161 53.0820 46.2330 0.6154 0.7528 TS307 76
77 TS449 48.2880 40.2970 0.1499 0.0631 48.2880 40.2970 0.1499 0.0631 TS449 77
78 TS453 48.2880 40.2970 0.1499 0.0631 48.2880 40.2970 0.1499 0.0631 TS453 78
79 TS346 48.2880 40.2970 0.1499 0.0631 48.2880 40.2970 0.1499 0.0631 TS346 79
80 TS452 48.2880 39.3840 0.1499 -0.0430 48.9730 40.0680 0.2164 0.0365 TS452 80
81 TS244 47.9450 44.9770 0.1165 0.6069 47.9450 44.9770 0.1165 0.6069 TS244 81
82 TS215 47.9450 35.8450 0.1165 -0.4541 53.0820 47.3740 0.6154 0.8854 TS215 82
83 TS028 47.6030 41.4380 0.0833 0.1957 52.3970 45.5480 0.5489 0.6732 TS028 83
84 TS302 47.6030 41.4380 0.0833 0.1957 47.6030 41.4380 0.0833 0.1957 TS302 84
85 TS142 47.6030 41.4380 0.0833 0.1957 47.6030 41.4380 0.0833 0.1957 TS142 85
86 TS173 47.6030 37.5570 0.0833 -0.2552 56.1640 53.4250 0.9148 1.5884 TS173 86
87 TS278 46.5750 37.9000 -0.0165 -0.2154 46.5750 37.9000 -0.0165 -0.2154 TS278 87
88 TS029 46.2330 38.4700 -0.0497 -0.1492 46.2330 38.4700 -0.0497 -0.1492 TS029 88
89 TS296 45.8900 43.6070 -0.0830 0.4477 48.9730 45.5480 0.2164 0.6732 TS296 89
90 TS484 45.8900 34.2470 -0.0830 -0.6398 57.8770 57.1920 1.0811 2.0261 TS484 90
91 TS358 45.5480 40.9820 -0.1163 0.1427 56.5070 47.3740 0.9481 0.8854 TS358 91
92 TS001 44.1780 39.6120 -0.2493 -0.0165 44.1780 39.6120 -0.2493 -0.0165 TS001 92
93 TS350 43.1510 35.6160 -0.3491 -0.4807 52.0550 40.8680 0.5157 0.1295 TS350 93
94 TS435 42.8080 36.4160 -0.3824 -0.3878 56.1640 52.7400 0.9148 1.5088 TS435 94
95 TS018 42.1230 36.8720 -0.4489 -0.3348 42.4660 36.8720 -0.4156 -0.3348 TS018 95
96 TS026 42.1230 34.8170 -0.4489 -0.5736 50.3420 43.7210 0.3493 0.4609 TS026 96
97 TS236 41.4380 31.3930 -0.5154 -0.9714 52.3970 34.8170 0.5489 -0.5736 TS236 97
98 TS114 41.4380 31.3930 -0.5154 -0.9714 52.3970 34.8170 0.5489 -0.5736 TS114 98
99 TS199 41.0960 41.0960 -0.5486 0.1560 41.0960 41.0960 -0.5486 0.1560 TS199 99
100 TS055 41.0960 41.0960 -0.5486 0.1560 54.7950 47.4890 0.7818 0.8987 TS055 100
101 TS245 40.7530 35.7310 -0.5820 -0.4674 40.7530 35.7310 -0.5820 -0.4674 TS245 101
102 TS153 40.0680 38.4700 -0.6485 -0.1492 40.0680 38.4700 -0.6485 -0.1492 TS153 102
103 TS301 40.0680 37.3290 -0.6485 -0.2817 50.6850 44.1780 0.3827 0.5140 TS301 103
104 TS104 39.3840 33.9040 -0.7149 -0.6797 60.6160 51.7120 1.3472 1.3894 TS104 104
105 AL396 39.3840 32.9910 -0.7149 -0.7857 39.3840 33.2190 -0.7149 -0.7592 AL396 105
106 TS084 38.3560 28.7670 -0.8148 -1.2765 41.0960 32.6480 -0.5486 -0.8256 TS084 106
107 TS382 37.6710 36.3010 -0.8813 -0.4012 59.2470 51.0270 1.2142 1.3098 TS382 107
108 TS420 37.3290 34.8170 -0.9145 -0.5736 37.3290 34.8170 -0.9145 -0.5736 TS420 108
109 TS471 37.3290 34.8170 -0.9145 -0.5736 37.3290 34.8170 -0.9145 -0.5736 TS471 109
110 TS200 36.9860 30.3650 -0.9478 -1.0908 36.9860 30.3650 -0.9478 -1.0908 TS200 110
111 TS206 36.6440 32.4200 -0.9810 -0.8521 36.6440 32.4200 -0.9810 -0.8521 TS206 111
112 TS182 36.6440 28.6530 -0.9810 -1.2897 36.6440 28.6530 -0.9810 -1.2897 TS182 112
113 TS149 35.6160 28.9950 -1.0809 -1.2500 35.6160 28.9950 -1.0809 -1.2500 TS149 113
114 TS047 35.2740 31.3930 -1.1141 -0.9714 35.2740 31.3930 -1.1141 -0.9714 TS047 114
115 TS147 35.2740 27.2830 -1.1141 -1.4489 47.2600 43.3790 0.0500 0.4212 TS147 115
116 AL285 33.5620 31.5070 -1.2804 -0.9582 36.9860 33.5620 -0.9478 -0.7194 AL285 116
117 TS045 33.5620 30.5940 -1.2804 -1.0642 44.1780 40.9820 -0.2493 0.1427 TS045 117
118 TS289 33.5620 30.3650 -1.2804 -1.0908 33.5620 30.3650 -1.2804 -1.0908 TS289 118
119 TS328 33.2190 30.0230 -1.3137 -1.1306 33.2190 30.0230 -1.3137 -1.1306 TS328 119
120 TS250 33.2190 27.3970 -1.3137 -1.4357 33.2190 28.9950 -1.3137 -1.2500 TS250 120
121 TS481 32.8770 26.0270 -1.3469 -1.5948 58.5620 44.8630 1.1477 0.5936 TS481 121
122 TS373 32.1920 32.1920 -1.4134 -0.8786 34.5890 32.1920 -1.1806 -0.8786 TS373 122
123 TS220 31.8490 29.6800 -1.4467 -1.1704 52.0550 41.6670 0.5157 0.2223 TS220 123
124 TS447 31.8490 29.6800 -1.4467 -1.1704 52.0550 41.6670 0.5157 0.2223 TS447 124
125 TS229 31.8490 28.1960 -1.4467 -1.3428 36.3010 33.3330 -1.0143 -0.7460 TS229 125
126 TS353 31.5070 30.1370 -1.4799 -1.1173 31.5070 31.2790 -1.4799 -0.9846 TS353 126
127 TS214 31.5070 30.0230 -1.4799 -1.1306 31.5070 30.3650 -1.4799 -1.0908 TS214 127
128 TS186 31.5070 30.0230 -1.4799 -1.1306 31.8490 30.2510 -1.4467 -1.1041 TS186 128
129 TS020 31.5070 28.3110 -1.4799 -1.3295 31.5070 28.4250 -1.4799 -1.3162 TS020 129
130 TS355 29.7950 27.9680 -1.6462 -1.3693 41.0960 30.5940 -0.5486 -1.0642 TS355 130
131 TS345 29.7950 24.0870 -1.6462 -1.8202 50.0000 43.1510 0.3161 0.3947 TS345 131
132 TS333 29.4520 29.2240 -1.6795 -1.2234 29.4520 29.2240 -1.6795 -1.2234 TS333 132
133 TS160 29.4520 26.0270 -1.6795 -1.5948 36.6440 34.5890 -0.9810 -0.6001 TS160 133
134 RANDOM 28.80 24.45 -1.7428 -1.7781 28.80 24.45 -1.7428 -1.7781 RANDOM 134
135 TS403 27.0550 24.0870 -1.9123 -1.8202 28.0820 24.5430 -1.8126 -1.7673 TS403 135
136 TS248 26.7120 26.7120 -1.9456 -1.5153 26.7120 26.7120 -1.9456 -1.5153 TS248 136
137 TS336 26.3700 24.7720 -1.9789 -1.7407 27.7400 25.6850 -1.8458 -1.6346 TS336 137
138 TS311 26.0270 25.3420 -2.0122 -1.6744 29.1100 25.4570 -1.7127 -1.6611 TS311 138
139 TS314 25.6850 25.4570 -2.0454 -1.6611 36.6440 29.9090 -0.9810 -1.1438 TS314 139
140 TS476 23.9730 21.2330 -2.2117 -2.1518 23.9730 21.2330 -2.2117 -2.1518 TS476 140
141 TS436 21.5750 17.0090 -2.4445 -2.6426 21.5750 17.0090 -2.4445 -2.6426 TS436 141
142 TS362 19.5210 17.5800 -2.6440 -2.5763 19.5210 17.5800 -2.6440 -2.5763 TS362 142
143 TS171 19.1780 15.2970 -2.6773 -2.8415 19.1780 15.2970 -2.6773 -2.8415 TS171 143
144 TS117 0.0000 0.0000 -4.5399 -4.6188 59.2470 52.7400 1.2142 1.5088 TS117 144
145 TS009             -1.7428 -1.7781             -1.7428 -1.7781 TS009 145
146 TS014             -1.7428 -1.7781             -1.7428 -1.7781 TS014 146
147 TS039             -1.7428 -1.7781             -1.7428 -1.7781 TS039 147
148 TS044             -1.7428 -1.7781             -1.7428 -1.7781 TS044 148
149 TS061             -1.7428 -1.7781             -1.7428 -1.7781 TS061 149
150 TS074             -1.7428 -1.7781             -1.7428 -1.7781 TS074 150
151 TS075             -1.7428 -1.7781             -1.7428 -1.7781 TS075 151
152 TS083             -1.7428 -1.7781             -1.7428 -1.7781 TS083 152
153 TS086             -1.7428 -1.7781             -1.7428 -1.7781 TS086 153
154 TS105             -1.7428 -1.7781             -1.7428 -1.7781 TS105 154
155 TS129             -1.7428 -1.7781             -1.7428 -1.7781 TS129 155
156 TS140             -1.7428 -1.7781             -1.7428 -1.7781 TS140 156
157 TS150             -1.7428 -1.7781             -1.7428 -1.7781 TS150 157
158 TS152             -1.7428 -1.7781             -1.7428 -1.7781 TS152 158
159 TS154             -1.7428 -1.7781             -1.7428 -1.7781 TS154 159
160 TS178             -1.7428 -1.7781             -1.7428 -1.7781 TS178 160
161 TS180             -1.7428 -1.7781             -1.7428 -1.7781 TS180 161
162 TS184             -1.7428 -1.7781             -1.7428 -1.7781 TS184 162
163 TS189             -1.7428 -1.7781             -1.7428 -1.7781 TS189 163
164 TS228             -1.7428 -1.7781             -1.7428 -1.7781 TS228 164
165 TS254             -1.7428 -1.7781             -1.7428 -1.7781 TS254 165
166 TS261             -1.7428 -1.7781             -1.7428 -1.7781 TS261 166
167 TS263             -1.7428 -1.7781             -1.7428 -1.7781 TS263 167
168 TS264             -1.7428 -1.7781             -1.7428 -1.7781 TS264 168
169 TS269             -1.7428 -1.7781             -1.7428 -1.7781 TS269 169
170 TS279             -1.7428 -1.7781             -1.7428 -1.7781 TS279 170
171 TS322             -1.7428 -1.7781             -1.7428 -1.7781 TS322 171
172 TS324             -1.7428 -1.7781             -1.7428 -1.7781 TS324 172
173 TS330             -1.7428 -1.7781             -1.7428 -1.7781 TS330 173
174 TS331             -1.7428 -1.7781             -1.7428 -1.7781 TS331 174
175 TS433             -1.7428 -1.7781             -1.7428 -1.7781 TS433 175
176 TS439             -1.7428 -1.7781             -1.7428 -1.7781 TS439 176
177 TS444             -1.7428 -1.7781             -1.7428 -1.7781 TS444 177
178 TS461             -1.7428 -1.7781             -1.6795 -1.5418 TS461 178