T0602

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0602

3NKZ from Yersinia enterocolitica

Target type: Human/Server

Target sequence:

>T0602 3NKZ, Yersinia enterocolitica, 123 residues
SNAMERHQHLLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTYGQFPDHALLLGETQ

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3nkz

Jmol of T0602 structure : 3nkz

PyMOL of T0602

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0602A-2-941-97
T0602B-2-941-97
T0602C-2-921-95
T0602D-2-931-96

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Good template available, not mapped to SCOP. Four helices, core structue: antiparaell three alpha-helical bundle,should form dimer. See this paper for description of the template in detail.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3a7m_A | PyMOL of 3a7m A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Flagellar protein FliT (PF05400).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0602 T0602 T0602 T0602
First score First Z-score Best score Best Z-score
1 TS172 60.5260 55.2630 1.2147 0.8668 60.5260 57.4650 1.2147 1.1267 TS172 1
2 TS033 60.2630 57.1050 1.1783 1.0842 60.2630 57.1050 1.1783 1.0842 TS033 2
3 TS242 60.0000 58.2460 1.1419 1.2189 60.0000 58.2460 1.1419 1.2189 TS242 3
4 TS452 60.0000 58.0700 1.1419 1.1982 60.0000 58.0700 1.1419 1.1982 TS452 4
5 TS228 59.4740 54.9120 1.0690 0.8254 60.2630 56.4040 1.1783 1.0015 TS228 5
6 TS129 59.2110 56.0530 1.0325 0.9601 59.2110 56.4910 1.0325 1.0118 TS129 6
7 TS429 58.9470 52.6320 0.9960 0.5563 58.9470 53.7330 0.9960 0.6862 TS429 7
8 TS096 58.8540 55.7290 0.9831 0.9218 59.4740 58.2470 1.0690 1.2191 TS096 8
9 TS104 58.8540 55.3820 0.9831 0.8809 58.8540 55.3820 0.9831 0.8809 TS104 9
10 TS418 58.7630 57.7320 0.9705 1.1583 58.7630 57.7320 0.9705 1.1583 TS418 10
11 TS428 58.7630 57.7320 0.9705 1.1583 58.9470 57.7320 0.9960 1.1583 TS428 11
12 TS333 58.3330 56.7710 0.9109 1.0448 58.3330 56.7710 0.9109 1.0448 TS333 12
13 TS042 58.0730 55.2950 0.8749 0.8706 58.0730 55.2950 0.8749 0.8706 TS042 13
14 TS094 57.9900 55.5840 0.8634 0.9047 57.9900 57.4650 0.8634 1.1267 TS094 14
15 TS380 57.9900 55.5840 0.8634 0.9047 59.3750 55.5840 1.0553 0.9047 TS380 15
16 TS110 57.9900 55.5840 0.8634 0.9047 57.9900 55.5840 0.8634 0.9047 TS110 16
17 TS324 57.8950 56.1400 0.8502 0.9703 57.8950 56.9300 0.8502 1.0636 TS324 17
18 TS386 57.8950 53.7720 0.8502 0.6908 57.8950 57.2050 0.8502 1.0961 TS386 18
19 TS361 57.8120 57.4650 0.8387 1.1267 58.0730 57.4650 0.8749 1.1267 TS361 19
20 TS016 57.8120 56.5970 0.8387 1.0243 58.0730 57.2050 0.8749 1.0961 TS016 20
21 TS402 57.8120 56.5970 0.8387 1.0243 57.8120 56.5970 0.8387 1.0243 TS402 21
22 TS449 57.8120 56.5970 0.8387 1.0243 57.8120 56.5970 0.8387 1.0243 TS449 22
23 TS453 57.8120 56.5970 0.8387 1.0243 57.8120 56.5970 0.8387 1.0243 TS453 23
24 TS346 57.8120 56.5970 0.8387 1.0243 57.8120 56.5970 0.8387 1.0243 TS346 24
25 TS009 57.5520 56.8580 0.8027 1.0551 57.5520 56.8580 0.8027 1.0551 TS009 25
26 TS400 57.5520 52.6910 0.8027 0.5632 57.5520 56.5100 0.8027 1.0140 TS400 26
27 TS299 57.2920 56.7710 0.7666 1.0448 57.6320 56.7710 0.8138 1.0448 TS299 27
28 TS490 57.2920 53.6460 0.7666 0.6759 58.3330 57.7260 0.9109 1.1576 TS490 28
29 TS457 57.1050 52.8950 0.7407 0.5873 58.4210 55.0350 0.9231 0.8399 TS457 29
30 TS360 57.1050 50.6140 0.7407 0.3181 58.3330 52.6040 0.9109 0.5530 TS360 30
31 TS214 57.0310 54.2530 0.7305 0.7476 57.5520 56.3370 0.8027 0.9936 TS214 31
32 TS186 56.8420 52.8950 0.7043 0.5873 58.0730 55.8160 0.8749 0.9321 TS186 32
33 TS295 56.7710 52.0830 0.6945 0.4915 60.7890 58.8600 1.2512 1.2914 TS295 33
34 TS127 56.5100 55.6420 0.6583 0.9116 56.5100 55.6420 0.6583 0.9116 TS127 34
35 TS061 56.5100 54.8610 0.6583 0.8194 56.5100 54.8610 0.6583 0.8194 TS061 35
36 TS199 56.5100 54.8610 0.6583 0.8194 56.5100 54.8610 0.6583 0.8194 TS199 36
37 TS253 56.5100 54.4270 0.6583 0.7681 56.5100 54.4270 0.6583 0.7681 TS253 37
38 TS297 56.5100 52.8650 0.6583 0.5838 56.5790 53.9470 0.6679 0.7115 TS297 38
39 TS240 56.3160 55.2630 0.6314 0.8668 56.3160 55.2630 0.6314 0.8668 TS240 39
40 TS147 56.2500 55.3820 0.6223 0.8809 56.2500 55.3820 0.6223 0.8809 TS147 40
41 TS189 56.2500 51.9100 0.6223 0.4710 56.2500 53.2120 0.6223 0.6247 TS189 41
42 TS088 56.2500 51.2150 0.6223 0.3890 56.2500 52.7190 0.6223 0.5665 TS088 42
43 TS408 56.0530 54.1230 0.5950 0.7323 56.0530 54.1230 0.5950 0.7323 TS408 43
44 TS208 56.0530 50.6140 0.5950 0.3181 56.4430 53.8600 0.6490 0.7012 TS208 44
45 TS236 55.7890 52.2810 0.5584 0.5148 57.1050 55.2080 0.7407 0.8603 TS236 45
46 TS028 55.7890 51.8420 0.5584 0.4630 55.7890 51.8420 0.5584 0.4630 TS028 46
47 TS423 55.7890 49.2980 0.5584 0.1627 55.7890 53.6840 0.5584 0.6804 TS423 47
48 TS174 55.7290 54.8610 0.5501 0.8194 55.7290 54.8610 0.5501 0.8194 TS174 48
49 TS407 55.7290 52.6040 0.5501 0.5530 55.7290 54.6010 0.5501 0.7887 TS407 49
50 TS276 55.7290 51.7360 0.5501 0.4505 55.7290 51.7360 0.5501 0.4505 TS276 50
51 TS077 55.7290 51.7360 0.5501 0.4505 55.7290 51.7360 0.5501 0.4505 TS077 51
52 TS477 55.7290 51.7360 0.5501 0.4505 55.7290 51.7360 0.5501 0.4505 TS477 52
53 TS286 55.7290 51.7360 0.5501 0.4505 55.7290 51.7360 0.5501 0.4505 TS286 53
54 TS119 55.7290 48.5240 0.5501 0.0713 55.7290 48.5240 0.5501 0.0713 TS119 54
55 TS218 55.5260 53.7720 0.5219 0.6908 57.2920 54.5610 0.7666 0.7840 TS218 55
56 TS365 55.5260 52.4560 0.5219 0.5355 55.5260 52.4560 0.5219 0.5355 TS365 56
57 TS215 55.4690 53.5590 0.5141 0.6657 55.4690 53.5590 0.5141 0.6657 TS215 57
58 TS192 55.4690 53.2120 0.5141 0.6247 55.4690 53.2120 0.5141 0.6247 TS192 58
59 TS316 55.4690 46.0940 0.5141 -0.2155 55.4690 47.2220 0.5141 -0.0823 TS316 59
60 TS035 55.2630 50.0880 0.4855 0.2560 55.2630 50.0880 0.4855 0.2560 TS035 60
61 TS275 55.2630 50.0880 0.4855 0.2560 55.7290 52.6040 0.5501 0.5530 TS275 61
62 TS001 55.2630 50.0880 0.4855 0.2560 55.7290 52.7490 0.5501 0.5701 TS001 62
63 TS114 55.2080 54.6880 0.4779 0.7989 57.1050 55.2080 0.7407 0.8603 TS114 63
64 TS165 54.9480 54.6010 0.4419 0.7887 54.9480 54.6010 0.4419 0.7887 TS165 64
65 TS045 54.7370 53.5960 0.4126 0.6700 54.7370 53.5960 0.4126 0.6700 TS045 65
66 TS461 54.6880 53.2120 0.4058 0.6247 55.2080 53.4720 0.4779 0.6554 TS461 66
67 TS314 54.6390 52.4050 0.3990 0.5295 55.7290 52.4050 0.5501 0.5295 TS314 67
68 TS245 54.4740 52.8950 0.3762 0.5873 54.4740 52.8950 0.3762 0.5873 TS245 68
69 TS302 54.4740 51.2280 0.3762 0.3905 55.7890 51.8420 0.5584 0.4630 TS302 69
70 TS142 54.4740 51.2280 0.3762 0.3905 55.7890 51.8420 0.5584 0.4630 TS142 70
71 TS113 54.4270 53.5590 0.3697 0.6657 57.2920 57.1180 0.7666 1.0858 TS113 71
72 TS080 54.4270 50.0870 0.3697 0.2558 54.9480 54.2530 0.4419 0.7476 TS080 72
73 TS103 54.3810 53.2650 0.3633 0.6310 54.7370 53.2650 0.4126 0.6310 TS103 73
74 TS020 54.2110 48.5090 0.3397 0.0696 55.9280 53.0930 0.5777 0.6107 TS020 74
75 TS026 54.1670 52.4310 0.3336 0.5325 54.1670 52.4310 0.3336 0.5325 TS026 75
76 TS173 54.1670 51.7360 0.3336 0.4505 56.2500 51.7360 0.6223 0.4505 TS173 76
77 TS056 54.1670 51.7360 0.3336 0.4505 56.2500 51.7360 0.6223 0.4505 TS056 77
78 TS029 54.1670 51.0420 0.3336 0.3686 54.1670 51.0420 0.3336 0.3686 TS029 78
79 TS083 54.1240 48.7970 0.3277 0.1036 54.6880 49.0450 0.4058 0.1328 TS083 79
80 TS166 53.9060 52.5170 0.2975 0.5427 53.9060 52.5170 0.2975 0.5427 TS166 80
81 TS321 53.9060 51.3890 0.2975 0.4095 56.5100 55.1220 0.6583 0.8502 TS321 81
82 TS476 53.9060 51.1280 0.2975 0.3787 53.9060 51.1280 0.2975 0.3787 TS476 82
83 TS420 53.9060 51.1280 0.2975 0.3787 53.9060 51.1280 0.2975 0.3787 TS420 83
84 TS171 53.9060 51.1280 0.2975 0.3787 53.9060 51.1280 0.2975 0.3787 TS171 84
85 TS471 53.9060 51.1280 0.2975 0.3787 53.9060 51.1280 0.2975 0.3787 TS471 85
86 TS244 53.9060 50.6080 0.2975 0.3173 53.9060 52.4310 0.2975 0.5325 TS244 86
87 TS382 53.9060 49.9130 0.2975 0.2353 59.7370 55.4390 1.1054 0.8876 TS382 87
88 TS102 53.9060 47.6560 0.2975 -0.0311 56.0530 52.7190 0.5950 0.5665 TS102 88
89 TS470 53.6840 52.0180 0.2667 0.4838 56.5100 55.6420 0.6583 0.9116 TS470 89
90 TS002 53.6840 50.3510 0.2667 0.2870 54.7370 50.3510 0.4126 0.2870 TS002 90
91 TS311 53.6460 50.1740 0.2615 0.2661 53.6460 51.1400 0.2615 0.3801 TS311 91
92 TS063 53.6460 45.8330 0.2615 -0.2463 54.4270 52.5170 0.3697 0.5427 TS063 92
93 TS037 53.4210 49.2110 0.2303 0.1524 58.9470 56.3160 0.9960 0.9911 TS037 93
94 TS248 53.3850 32.5520 0.2253 -1.8140 53.3850 32.5520 0.2253 -1.8140 TS248 94
95 TS399 53.3510 50.0860 0.2206 0.2557 57.8120 56.5970 0.8387 1.0243 TS399 95
96 TS391 53.3510 45.6190 0.2206 -0.2716 53.3510 45.6190 0.2206 -0.2716 TS391 96
97 TS403 53.1580 51.0530 0.1938 0.3699 54.6880 51.0530 0.4058 0.3699 TS403 97
98 TS366 53.1580 49.6490 0.1938 0.2041 53.6460 49.8250 0.2615 0.2249 TS366 98
99 TS300 53.1250 52.4310 0.1893 0.5325 58.7630 57.7320 0.9705 1.1583 TS300 99
100 TS273 53.0930 52.7490 0.1848 0.5701 53.9060 52.7490 0.2975 0.5701 TS273 100
101 TS307 52.8950 49.9120 0.1574 0.2352 55.9900 54.7740 0.5862 0.8091 TS307 101
102 TS047 52.8650 49.6530 0.1532 0.2046 52.8650 49.6530 0.1532 0.2046 TS047 102
103 TS409 52.8650 46.0940 0.1532 -0.2155 55.2630 46.4040 0.4855 -0.1789 TS409 103
104 TS018 52.6320 46.4910 0.1210 -0.1686 52.6320 46.4910 0.1210 -0.1686 TS018 104
105 TS278 52.3680 49.0350 0.0844 0.1317 52.3680 49.0350 0.0844 0.1317 TS278 105
106 TS319 52.3680 47.6320 0.0844 -0.0339 53.9060 52.7490 0.2975 0.5701 TS319 106
107 TS149 52.3440 51.4760 0.0811 0.4198 52.3440 51.4760 0.0811 0.4198 TS149 107
108 TS436 52.1050 50.3510 0.0479 0.2870 52.1050 50.3510 0.0479 0.2870 TS436 108
109 TS458 52.1050 50.1750 0.0479 0.2662 56.0530 53.9060 0.5950 0.7066 TS458 109
110 TS481 52.1050 49.0350 0.0479 0.1317 52.3440 50.0870 0.0811 0.2558 TS481 110
111 AL396 52.0830 51.3890 0.0449 0.4095 52.0830 51.3890 0.0449 0.4095 AL396 111
112 TS419 51.8420 45.6140 0.0115 -0.2721 58.7630 57.7320 0.9705 1.1583 TS419 112
113 TS328 51.5790 50.5260 -0.0249 0.3077 51.5790 50.5260 -0.0249 0.3077 TS328 113
114 TS213 51.3160 50.6140 -0.0614 0.3181 52.1050 50.6140 0.0479 0.3181 TS213 114
115 AL285 51.3160 47.1050 -0.0614 -0.0962 53.6840 52.0180 0.2667 0.4838 AL285 115
116 TS353 51.0420 45.1390 -0.0994 -0.3282 58.3330 56.5970 0.9109 1.0243 TS353 116
117 TS055 51.0310 48.4540 -0.1009 0.0631 55.4690 54.0800 0.5141 0.7272 TS055 117
118 TS450 50.0000 45.2630 -0.2437 -0.3136 50.0000 45.2630 -0.2437 -0.3136 TS450 118
119 TS395 49.7370 46.4040 -0.2802 -0.1789 59.2110 58.8600 1.0325 1.2914 TS395 119
120 TS153 48.9470 45.9650 -0.3896 -0.2307 48.9470 45.9650 -0.3896 -0.2307 TS153 120
121 TS484 48.4380 44.7920 -0.4602 -0.3692 48.7110 47.8520 -0.4223 -0.0080 TS484 121
122 TS220 48.1580 41.1400 -0.4990 -0.8003 55.7890 51.8420 0.5584 0.4630 TS220 122
123 TS447 48.1580 41.1400 -0.4990 -0.8003 55.7890 51.8420 0.5584 0.4630 TS447 123
124 TS424 47.6800 43.0410 -0.5652 -0.5759 57.0310 51.6490 0.7305 0.4402 TS424 124
125 TS296 46.6490 44.7590 -0.7080 -0.3731 52.3680 47.6320 0.0844 -0.0339 TS296 125
126 TS250 43.9470 40.0000 -1.0824 -0.9348 52.6320 49.1230 0.1210 0.1421 TS250 126
127 TS257 43.6840 36.4910 -1.1189 -1.3490 47.3680 37.5440 -0.6084 -1.2247 TS257 127
128 TS229 40.0000 35.7020 -1.6293 -1.4422 44.7920 39.2360 -0.9654 -1.0250 TS229 128
129 TS291 38.9180 35.3090 -1.7793 -1.4885 54.7370 51.4040 0.4126 0.4113 TS291 129
130 TS084 38.5420 26.2150 -1.8314 -2.5620 49.4740 43.5090 -0.3166 -0.5206 TS084 130
131 TS345 37.6320 32.5440 -1.9574 -1.8149 53.9470 49.3860 0.3032 0.1731 TS345 131
132 TS301 36.5790 35.8770 -2.1034 -1.4215 52.3680 47.6320 0.0844 -0.0339 TS301 132
133 TS322 35.9380 34.0280 -2.1922 -1.6398 41.5790 36.2280 -1.4105 -1.3801 TS322 133
134 TS304 35.9380 27.1700 -2.1922 -2.4493 40.2630 27.1700 -1.5929 -2.4493 TS304 134
135 TS269 35.4170 31.9440 -2.2644 -1.8858 44.4740 42.3680 -1.0094 -0.6553 TS269 135
136 TS152 35.4170 31.9440 -2.2644 -1.8858 44.4740 42.3680 -1.0094 -0.6553 TS152 136
137 TS200 35.1560 33.5070 -2.3005 -1.7013 44.7370 33.5070 -0.9730 -1.7013 TS200 137
138 RANDOM 35.08 31.75 -2.3111 -1.9087 35.08 31.75 -2.3111 -1.9087 RANDOM 138
139 TS140 34.3750 30.2080 -2.4087 -2.0907 42.3680 39.0350 -1.3012 -1.0487 TS140 139
140 TS435 33.5940 31.7710 -2.5170 -1.9062 50.5260 44.9120 -0.1709 -0.3550 TS435 140
141 TS350 33.1580 25.2630 -2.5774 -2.6744 47.1350 40.1910 -0.6407 -0.9123 TS350 141
142 TS355 31.3160 26.8420 -2.8326 -2.4880 48.1770 42.1050 -0.4963 -0.6863 TS355 142
143 TS264 30.7290 27.9510 -2.9139 -2.3571 31.0530 27.9510 -2.8690 -2.3571 TS264 143
144 TS207 28.6840 25.2630 -3.1973 -2.6744 28.6840 25.2630 -3.1973 -2.6744 TS207 144
145 TS206 28.4210 20.8770 -3.2337 -3.1921 28.4210 20.8770 -3.2337 -3.1921 TS206 145
146 TS373 24.4850 20.1890 -3.7791 -3.2733 30.0000 27.0180 -3.0149 -2.4672 TS373 146
147 TS336 22.6320 20.3510 -4.0358 -3.2542 26.5790 25.2600 -3.4890 -2.6747 TS336 147
148 TS289 20.6190 17.0100 -4.3148 -3.6486 20.6190 17.0100 -4.3148 -3.6486 TS289 148
149 TS117 4.2110 4.2110 -6.5883 -5.1594 55.2630 52.9510 0.4855 0.5939 TS117 149
150 TS014             -2.3111 -1.9087             -2.3111 -1.9087 TS014 150
151 TS039             -2.3111 -1.9087             -2.3111 -1.9087 TS039 151
152 TS044             -2.3111 -1.9087             -2.3111 -1.9087 TS044 152
153 TS060             -2.3111 -1.9087             -2.3111 -1.9087 TS060 153
154 TS074             -2.3111 -1.9087             -2.3111 -1.9087 TS074 154
155 TS075             -2.3111 -1.9087             -2.3111 -1.9087 TS075 155
156 TS086             -2.3111 -1.9087             -2.3111 -1.9087 TS086 156
157 TS105             -2.3111 -1.9087             -2.3111 -1.9087 TS105 157
158 TS150             -2.3111 -1.9087             -2.3111 -1.9087 TS150 158
159 TS154             -2.3111 -1.9087             -2.3111 -1.9087 TS154 159
160 TS160             -2.3111 -1.9087             -2.3111 -1.9087 TS160 160
161 TS170             -2.3111 -1.9087             -2.3111 -1.9087 TS170 161
162 TS178             -2.3111 -1.9087             -2.3111 -1.9087 TS178 162
163 TS180             -2.3111 -1.9087             -2.3111 -1.9087 TS180 163
164 TS182             -2.3111 -1.9087             -2.3111 -1.9087 TS182 164
165 TS184             -2.3111 -1.9087             -2.3111 -1.9087 TS184 165
166 TS254             -2.3111 -1.9087             -2.3111 -1.9087 TS254 166
167 TS261             -2.3111 -1.9087             -2.3111 -1.9087 TS261 167
168 TS263             -2.3111 -1.9087             -2.3111 -1.9087 TS263 168
169 TS279             -2.3111 -1.9087             -2.3111 -1.9087 TS279 169
170 TS282             -2.3111 -1.9087             -2.3111 -1.9087 TS282 170
171 TS330             -2.3111 -1.9087             -2.3111 -1.9087 TS330 171
172 TS331             -2.3111 -1.9087             -2.3111 -1.9087 TS331 172
173 TS347             -2.3111 -1.9087             -2.3111 -1.9087 TS347 173
174 TS358             -2.3111 -1.9087             -2.3111 -1.9087 TS358 174
175 TS362             -2.3111 -1.9087             -2.3111 -1.9087 TS362 175
176 TS433             -2.3111 -1.9087             -2.3111 -1.9087 TS433 176
177 TS439             -2.3111 -1.9087             -2.3111 -1.9087 TS439 177
178 TS444             -2.3111 -1.9087             -2.3111 -1.9087 TS444 178