T0562

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0562

CmR116 from unknown species

Target type: Human/Server

Target sequence:

>T0562 CmR116, unknown species, 123 residues
MKDGTYYAEADDFDESGWKDTVTIEVKNGKIVSVDWNAINKDGGDDKDTLSRNGGYKMVEYGGAQAEWHEQAEKVEAYLVEKQDPTDIKYKDNDGHTDAISGATIKVKKFFDLAQKALKDAEK

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: NMR
Determined by: NESG
PDB ID: 2kzx

Jmol of T0562 structure : 2kzx

PyMOL of T0562

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0562A1-1311-123

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

two layers, a/b domain, beta sheet (order 123, 2 is antiparrel to the reset) extends with a four helical bundle. The last helix packing against the beta sheet.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3dcz_A | PyMOL of 3dcz A 96-224

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

FMN-binding domain (PF04205).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0562 T0562 T0562 T0562
First score First Z-score Best score Best Z-score
1 TS102 40.6500 35.2300 1.9432 2.1441 40.6500 35.3660 1.9432 2.1684 TS102 1
2 TS321 40.4470 34.4850 1.9125 2.0110 40.4470 34.4850 1.9125 2.0110 TS321 2
3 TS429 37.1950 33.6720 1.4207 1.8658 37.1950 33.6720 1.4207 1.8658 TS429 3
4 TS088 36.5850 32.2490 1.3284 1.6115 36.7890 32.7910 1.3593 1.7083 TS088 4
5 TS275 36.1790 34.3500 1.2670 1.9869 36.1790 34.3500 1.2670 1.9869 TS275 5
6 TS276 35.9760 33.2660 1.2363 1.7932 35.9760 33.2660 1.2363 1.7932 TS276 6
7 TS286 35.9760 33.2660 1.2363 1.7932 36.7890 33.2660 1.3593 1.7932 TS286 7
8 TS253 35.7720 30.2170 1.2055 1.2484 37.1950 30.5560 1.4207 1.3090 TS253 8
9 TS077 35.3660 32.6560 1.1441 1.6842 35.3660 32.6560 1.1441 1.6842 TS077 9
10 TS174 35.1630 31.9780 1.1134 1.5631 35.1630 31.9780 1.1134 1.5631 TS174 10
11 TS165 34.7560 29.3360 1.0518 1.0910 34.7560 29.3360 1.0518 1.0910 TS165 11
12 TS457 34.7560 27.9810 1.0518 0.8489 34.7560 27.9810 1.0518 0.8489 TS457 12
13 TS449 34.5530 30.2170 1.0211 1.2484 34.5530 30.2170 1.0211 1.2484 TS449 13
14 TS453 34.5530 30.2170 1.0211 1.2484 34.5530 30.2170 1.0211 1.2484 TS453 14
15 TS346 34.5530 30.2170 1.0211 1.2484 34.5530 30.2170 1.0211 1.2484 TS346 15
16 TS409 34.3500 30.6910 0.9904 1.3331 36.5850 32.3850 1.3284 1.6358 TS409 16
17 TS407 34.3500 29.4720 0.9904 1.1153 40.6500 35.7720 1.9432 2.2410 TS407 17
18 TS361 33.9430 30.5560 0.9289 1.3090 34.1460 30.5560 0.9596 1.3090 TS361 18
19 TS245 33.9430 29.7430 0.9289 1.1637 33.9430 29.7430 0.9289 1.1637 TS245 19
20 TS094 33.9430 28.1840 0.9289 0.8851 36.5850 32.3850 1.3284 1.6358 TS094 20
21 TS380 33.9430 28.1840 0.9289 0.8851 36.7890 28.3200 1.3593 0.9094 TS380 21
22 TS470 33.9430 28.1840 0.9289 0.8851 35.7720 28.1840 1.2055 0.8851 TS470 22
23 TS060 33.9430 28.1840 0.9289 0.8851 36.5850 32.4530 1.3284 1.6479 TS060 23
24 TS302 32.7240 23.9160 0.7445 0.1225 32.7240 23.9160 0.7445 0.1225 TS302 24
25 TS142 32.7240 23.9160 0.7445 0.1225 32.7240 23.9160 0.7445 0.1225 TS142 25
26 TS345 32.5200 24.3900 0.7137 0.2072 33.9430 26.8970 0.9289 0.6552 TS345 26
27 TS104 32.5200 24.2550 0.7137 0.1831 32.5200 24.2550 0.7137 0.1831 TS104 27
28 TS428 32.3170 26.3550 0.6829 0.5583 35.7720 26.6940 1.2055 0.6189 TS428 28
29 TS113 32.3170 22.2220 0.6829 -0.1802 40.2440 34.4170 1.8818 1.9989 TS113 29
30 TS037 32.1140 21.2740 0.6522 -0.3496 40.2440 35.0950 1.8818 2.1200 TS037 30
31 TS418 31.9110 22.0870 0.6215 -0.2043 33.7400 28.7260 0.8982 0.9820 TS418 31
32 TS127 31.5040 27.5750 0.5600 0.7763 32.9270 29.7430 0.7752 1.1637 TS127 32
33 TS213 31.3010 29.7430 0.5293 1.1637 31.3010 29.7430 0.5293 1.1637 TS213 33
34 TS481 31.0980 28.5230 0.4986 0.9457 39.8370 28.9970 1.8202 1.0304 TS481 34
35 TS435 31.0980 24.5930 0.4986 0.2435 35.7720 26.8290 1.2055 0.6430 TS435 35
36 TS452 31.0980 21.7480 0.4986 -0.2649 31.0980 22.0190 0.4986 -0.2165 TS452 36
37 TS490 30.8940 22.2220 0.4677 -0.1802 31.0980 23.7800 0.4986 0.0982 TS490 37
38 TS171 30.6910 26.0840 0.4370 0.5099 30.6910 26.0840 0.4370 0.5099 TS171 38
39 TS018 30.4880 26.9650 0.4063 0.6673 30.4880 26.9650 0.4063 0.6673 TS018 39
40 TS366 30.4880 25.1360 0.4063 0.3405 31.0980 25.1360 0.4986 0.3405 TS366 40
41 TS063 30.2850 22.8320 0.3756 -0.0712 31.0980 25.1360 0.4986 0.3405 TS063 41
42 TS103 30.0810 28.1840 0.3448 0.8851 30.0810 28.1840 0.3448 0.8851 TS103 42
43 TS391 30.0810 23.9840 0.3448 0.1347 30.0810 23.9840 0.3448 0.1347 TS391 43
44 TS236 29.6750 27.5750 0.2834 0.7763 29.8780 27.5750 0.3141 0.7763 TS236 44
45 AL285 29.6750 23.4420 0.2834 0.0378 29.6750 23.4420 0.2834 0.0378 AL285 45
46 TS215 29.4720 25.2710 0.2527 0.3646 29.4720 25.2710 0.2527 0.3646 TS215 46
47 TS080 29.4720 25.2710 0.2527 0.3646 29.4720 25.2710 0.2527 0.3646 TS080 47
48 TS436 29.4720 25.1360 0.2527 0.3405 29.4720 25.1360 0.2527 0.3405 TS436 48
49 TS307 29.4720 25.1360 0.2527 0.3405 29.8780 25.6780 0.3141 0.4373 TS307 49
50 TS220 29.4720 21.7480 0.2527 -0.2649 46.9510 38.4150 2.8961 2.7133 TS220 50
51 TS447 29.4720 21.7480 0.2527 -0.2649 46.9510 38.4150 2.8961 2.7133 TS447 51
52 TS291 29.2680 26.8290 0.2218 0.6430 34.7560 30.8270 1.0518 1.3574 TS291 52
53 TS395 29.2680 24.5260 0.2218 0.2315 29.2680 24.5260 0.2218 0.2315 TS395 53
54 TS055 29.2680 23.7130 0.2218 0.0862 34.5530 31.7070 1.0211 1.5146 TS055 54
55 TS419 29.2680 20.4610 0.2218 -0.4949 40.4470 34.4850 1.9125 2.0110 TS419 55
56 TS166 29.2680 20.4610 0.2218 -0.4949 29.2680 20.6640 0.2218 -0.4586 TS166 56
57 TS119 28.8620 26.0160 0.1604 0.4977 29.4720 26.0160 0.2527 0.4977 TS119 57
58 TS002 28.6590 21.2740 0.1297 -0.3496 35.7720 26.8290 1.2055 0.6430 TS002 58
59 TS282 28.2520 25.0680 0.0682 0.3283 28.2520 25.0680 0.0682 0.3283 TS282 59
60 TS207 27.4390 23.6450 -0.0548 0.0741 30.4880 24.5260 0.4063 0.2315 TS207 60
61 TS218 27.4390 22.0190 -0.0548 -0.2165 27.4390 22.0190 -0.0548 -0.2165 TS218 61
62 TS314 27.2360 21.0030 -0.0855 -0.3980 33.3330 30.7590 0.8366 1.3452 TS314 62
63 TS304 26.8290 20.7320 -0.1470 -0.4464 31.7070 28.4550 0.5907 0.9336 TS304 63
64 TS129 26.2200 21.6120 -0.2391 -0.2892 27.8460 22.6290 0.0068 -0.1075 TS129 64
65 TS001 25.4070 23.5090 -0.3621 0.0498 28.8620 24.0510 0.1604 0.1466 TS001 65
66 TS355 25.4070 21.7480 -0.3621 -0.2649 31.0980 25.0680 0.4986 0.3283 TS355 66
67 TS319 25.2030 21.1380 -0.3929 -0.3739 33.1300 26.7620 0.8059 0.6310 TS319 67
68 TS056 25.2030 21.1380 -0.3929 -0.3739 26.6260 22.2220 -0.1777 -0.1802 TS056 68
69 TS273 25.2030 21.1380 -0.3929 -0.3739 33.1300 26.7620 0.8059 0.6310 TS273 69
70 TS173 25.2030 20.4610 -0.3929 -0.4949 29.2680 23.9840 0.2218 0.1347 TS173 70
71 TS476 24.7970 21.0030 -0.4543 -0.3980 26.4230 23.3060 -0.2084 0.0135 TS476 71
72 TS208 24.1870 21.2060 -0.5466 -0.3617 24.1870 21.8160 -0.5466 -0.2527 TS208 72
73 TS026 23.9840 17.7510 -0.5773 -0.9791 23.9840 17.7510 -0.5773 -0.9791 TS026 73
74 TS264 23.5770 21.2740 -0.6388 -0.3496 23.5770 21.2740 -0.6388 -0.3496 TS264 74
75 TS047 23.5770 20.9350 -0.6388 -0.4102 23.5770 20.9350 -0.6388 -0.4102 TS047 75
76 TS420 23.1710 20.7320 -0.7003 -0.4464 23.1710 20.7320 -0.7003 -0.4464 TS420 76
77 TS471 23.1710 20.7320 -0.7003 -0.4464 23.1710 20.7320 -0.7003 -0.4464 TS471 77
78 TS014 22.7640 18.2250 -0.7618 -0.8944 22.7640 18.7670 -0.7618 -0.7975 TS014 78
79 TS350 21.9510 18.8350 -0.8848 -0.7854 25.6100 22.0870 -0.3314 -0.2043 TS350 79
80 TS117 21.9510 18.6990 -0.8848 -0.8097 22.7640 19.9190 -0.7618 -0.5917 TS117 80
81 TS214 20.7320 18.1570 -1.0691 -0.9065 22.3580 19.5120 -0.8232 -0.6644 TS214 81
82 TS248 19.7150 17.1410 -1.2229 -1.0881 19.7150 17.1410 -1.2229 -1.0881 TS248 82
83 TS328 19.3090 15.7860 -1.2843 -1.3302 19.3090 15.7860 -1.2843 -1.3302 TS328 83
84 TS250 19.1060 17.6150 -1.3150 -1.0034 19.7150 18.4960 -1.2229 -0.8460 TS250 84
85 TS444 17.8860 14.0920 -1.4995 -1.6329 20.3250 17.3440 -1.1307 -1.0518 TS444 85
86 TS229 17.4800 15.9890 -1.5609 -1.2939 20.5280 19.3770 -1.1000 -0.6885 TS229 86
87 TS028 16.8700 14.7020 -1.6532 -1.5239 20.7320 18.2250 -1.0691 -0.8944 TS028 87
88 RANDOM 16.72 14.01 -1.6759 -1.6475 16.72 14.01 -1.6759 -1.6475 RANDOM 88
89 TS289 16.4630 12.5340 -1.7147 -1.9113 16.4630 12.5340 -1.7147 -1.9113 TS289 89
90 TS114 15.8540 14.4310 -1.8068 -1.5723 16.8700 16.3280 -1.6532 -1.2334 TS114 90
91 AL396 15.4470 13.2790 -1.8684 -1.7782 25.2030 21.1380 -0.3929 -0.3739 AL396 91
92 TS244 15.2440 12.6690 -1.8991 -1.8872 22.1540 18.5640 -0.8541 -0.8338 TS244 92
93 TS296 14.0240 12.2630 -2.0836 -1.9597 23.3740 20.9350 -0.6696 -0.4102 TS296 93
94 TS009             -1.6759 -1.6475             -1.6759 -1.6475 TS009 94
95 TS016             -1.6759 -1.6475             -1.6759 -1.6475 TS016 95
96 TS020             -1.6759 -1.6475             -1.6759 -1.6475 TS020 96
97 TS029             -1.6759 -1.6475             -1.6759 -1.6475 TS029 97
98 TS033             -1.6759 -1.6475             -1.6759 -1.6475 TS033 98
99 TS035             -1.6759 -1.6475             -1.6759 -1.6475 TS035 99
100 TS039             -1.6759 -1.6475             -1.6759 -1.6475 TS039 100
101 TS042             -1.6759 -1.6475             -1.6759 -1.6475 TS042 101
102 TS044             -1.6759 -1.6475             -1.6759 -1.6475 TS044 102
103 TS045             -1.6759 -1.6475             -1.6759 -1.6475 TS045 103
104 TS061             -1.6759 -1.6475             -1.6759 -1.6475 TS061 104
105 TS074             -1.6759 -1.6475             -1.6759 -1.6475 TS074 105
106 TS075             -1.6759 -1.6475             -1.6759 -1.6475 TS075 106
107 TS083             -1.6759 -1.6475             -1.6759 -1.6475 TS083 107
108 TS084             -1.6759 -1.6475             -1.6759 -1.6475 TS084 108
109 TS086             -1.6759 -1.6475             -1.6759 -1.6475 TS086 109
110 TS096             -1.6759 -1.6475             -1.6759 -1.6475 TS096 110
111 TS105             -1.6759 -1.6475             -1.6759 -1.6475 TS105 111
112 TS110             -1.6759 -1.6475             -1.6759 -1.6475 TS110 112
113 TS140             -1.6759 -1.6475             -1.6759 -1.6475 TS140 113
114 TS147             -1.6759 -1.6475             -1.6759 -1.6475 TS147 114
115 TS149             -1.6759 -1.6475             -1.6759 -1.6475 TS149 115
116 TS150             -1.6759 -1.6475             -1.6759 -1.6475 TS150 116
117 TS152             -1.6759 -1.6475             -1.6759 -1.6475 TS152 117
118 TS153             -1.6759 -1.6475             -1.6759 -1.6475 TS153 118
119 TS154             -1.6759 -1.6475             -1.6759 -1.6475 TS154 119
120 TS160             -1.6759 -1.6475             -1.6759 -1.6475 TS160 120
121 TS170             -1.6759 -1.6475             -1.6759 -1.6475 TS170 121
122 TS172             -1.6759 -1.6475             -1.6759 -1.6475 TS172 122
123 TS178             -1.6759 -1.6475             -1.6759 -1.6475 TS178 123
124 TS180             -1.6759 -1.6475             -1.6759 -1.6475 TS180 124
125 TS182             -1.6759 -1.6475             -1.6759 -1.6475 TS182 125
126 TS184             -1.6759 -1.6475             -1.6759 -1.6475 TS184 126
127 TS186             -1.6759 -1.6475             -1.6759 -1.6475 TS186 127
128 TS189             -1.6759 -1.6475             -1.6759 -1.6475 TS189 128
129 TS192             -1.6759 -1.6475             -1.6759 -1.6475 TS192 129
130 TS199             -1.6759 -1.6475             -1.6759 -1.6475 TS199 130
131 TS200             -1.6759 -1.6475             -1.6759 -1.6475 TS200 131
132 TS206             -1.6759 -1.6475             -1.6759 -1.6475 TS206 132
133 TS228             -1.6759 -1.6475             -1.6759 -1.6475 TS228 133
134 TS240             -1.6759 -1.6475             -1.6759 -1.6475 TS240 134
135 TS242             -1.6759 -1.6475             -1.6759 -1.6475 TS242 135
136 TS254             -1.6759 -1.6475             -1.6759 -1.6475 TS254 136
137 TS257             -1.6759 -1.6475             -1.6759 -1.6475 TS257 137
138 TS261             -1.6759 -1.6475             -1.6759 -1.6475 TS261 138
139 TS263             -1.6759 -1.6475             -1.6759 -1.6475 TS263 139
140 TS269             -1.6759 -1.6475             -1.6759 -1.6475 TS269 140
141 TS278             -1.6759 -1.6475             -1.6759 -1.6475 TS278 141
142 TS279             -1.6759 -1.6475             -1.6759 -1.6475 TS279 142
143 TS295             -1.6759 -1.6475             -1.6759 -1.6475 TS295 143
144 TS297             -1.6759 -1.6475             -1.6759 -1.6475 TS297 144
145 TS299             -1.6759 -1.6475             -1.6759 -1.6475 TS299 145
146 TS300             -1.6759 -1.6475             -1.6759 -1.6475 TS300 146
147 TS301             -1.6759 -1.6475             -1.6759 -1.6475 TS301 147
148 TS311             -1.6759 -1.6475             -1.6759 -1.6475 TS311 148
149 TS316             -1.6759 -1.6475             -1.6759 -1.6475 TS316 149
150 TS322             -1.6759 -1.6475             -1.6759 -1.6475 TS322 150
151 TS324             -1.6759 -1.6475             -1.6759 -1.6475 TS324 151
152 TS330             -1.6759 -1.6475             -1.6759 -1.6475 TS330 152
153 TS331             -1.6759 -1.6475             -1.6759 -1.6475 TS331 153
154 TS333             -1.6759 -1.6475             -1.6759 -1.6475 TS333 154
155 TS336             -1.6759 -1.6475             -1.6759 -1.6475 TS336 155
156 TS347             -1.6759 -1.6475             -1.6759 -1.6475 TS347 156
157 TS353             -1.6759 -1.6475             -1.6759 -1.6475 TS353 157
158 TS358             -1.6759 -1.6475             -1.6759 -1.6475 TS358 158
159 TS360             -1.6759 -1.6475             -1.6759 -1.6475 TS360 159
160 TS362             -1.6759 -1.6475             -1.6759 -1.6475 TS362 160
161 TS365             -1.6759 -1.6475             -1.6759 -1.6475 TS365 161
162 TS373             -1.6759 -1.6475             -1.6759 -1.6475 TS373 162
163 TS382             -1.6759 -1.6475             -1.6759 -1.6475 TS382 163
164 TS386             -1.6759 -1.6475             -1.6759 -1.6475 TS386 164
165 TS399             -1.6759 -1.6475             -1.6759 -1.6475 TS399 165
166 TS400             -1.6759 -1.6475             -1.6759 -1.6475 TS400 166
167 TS402             -1.6759 -1.6475             -1.6759 -1.6475 TS402 167
168 TS403             -1.6759 -1.6475             -1.6759 -1.6475 TS403 168
169 TS408             -1.6759 -1.6475             -1.6759 -1.6475 TS408 169
170 TS423             -1.6759 -1.6475             -1.6759 -1.6475 TS423 170
171 TS424             -1.6759 -1.6475             -1.6759 -1.6475 TS424 171
172 TS433             -1.6759 -1.6475             -1.6759 -1.6475 TS433 172
173 TS439             -1.6759 -1.6475             -1.6759 -1.6475 TS439 173
174 TS450             -1.6759 -1.6475             -1.6759 -1.6475 TS450 174
175 TS458             -1.6759 -1.6475             -1.6759 -1.6475 TS458 175
176 TS461             -1.6759 -1.6475             -1.6759 -1.6475 TS461 176
177 TS477             -1.6759 -1.6475             -1.6759 -1.6475 TS477 177
178 TS484             -1.6759 -1.6475             -1.6759 -1.6475 TS484 178