T0640

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0640

3NYW from Bacteroides thetaiotaomicron

Target type: Server only

Target sequence:

>T0640 3NYW, Bacteroides thetaiotaomicron, 250 residues
MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSIIEGHHHHHH

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: NYSGXRC
PDB ID: 3nyi

Jmol of T0640 structure : 3nyi

PyMOL of T0640

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0640A3-2415-243
T0640B4-2406-242
T0640C4-2416-243
T0640D4-2406-242

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Tyrosine-dependent oxidoreductases, ore: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456, parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

2jah_A | PyMOL of 2jah A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

short chain dehydrogenase alcohol dehydrogenase superfamily (PF00106).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0640 T0640 T0640 T0640
First score First Z-score Best score Best Z-score
1 TS104 81.5730 70.7750 1.6754 1.1275 81.5730 70.7750 1.6754 1.1275 TS104 1
2 TS236 79.9300 74.7650 1.3031 1.9171 79.9300 74.7650 1.3031 1.9171 TS236 2
3 TS114 79.9300 74.7650 1.3031 1.9171 79.9300 74.7650 1.3031 1.9171 TS114 3
4 TS428 79.9300 73.5130 1.3031 1.6693 79.9300 73.5130 1.3031 1.6693 TS428 4
5 TS449 78.9910 72.3400 1.0904 1.4372 78.9910 72.3400 1.0904 1.4372 TS449 5
6 TS453 78.9910 72.3400 1.0904 1.4372 78.9910 72.3400 1.0904 1.4372 TS453 6
7 TS346 78.9910 72.3400 1.0904 1.4372 78.9910 72.3400 1.0904 1.4372 TS346 7
8 TS420 78.6380 68.6230 1.0104 0.7017 78.6380 70.9310 1.0104 1.1584 TS420 8
9 TS471 78.6380 68.6230 1.0104 0.7017 78.6380 70.9310 1.0104 1.1584 TS471 9
10 TS119 78.4040 66.5100 0.9573 0.2835 78.5210 66.5100 0.9838 0.2835 TS119 10
11 TS490 78.2860 69.8360 0.9306 0.9417 78.6380 69.8360 1.0104 0.9417 TS490 11
12 TS214 78.2860 66.4710 0.9306 0.2758 78.2860 71.8310 0.9306 1.3365 TS214 12
13 TS481 78.1690 72.1440 0.9041 1.3984 78.1690 72.1440 0.9041 1.3984 TS481 13
14 TS380 78.1690 67.9970 0.9041 0.5778 78.1690 69.7970 0.9041 0.9340 TS380 14
15 TS094 78.1690 63.3800 0.9041 -0.3358 78.4040 66.5100 0.9573 0.2835 TS094 15
16 TS361 78.0520 64.4370 0.8776 -0.1267 78.4040 72.6130 0.9573 1.4912 TS361 16
17 TS166 77.9340 70.7360 0.8508 1.1198 77.9340 70.7360 0.8508 1.1198 TS166 17
18 TS218 77.5820 71.0880 0.7711 1.1895 77.5820 71.0880 0.7711 1.1895 TS218 18
19 TS409 77.5820 70.6180 0.7711 1.0964 77.5820 70.6180 0.7711 1.0964 TS409 19
20 TS173 77.4650 71.5960 0.7446 1.2900 78.5210 72.6920 0.9838 1.5069 TS173 20
21 TS056 77.4650 71.5960 0.7446 1.2900 78.5210 72.6920 0.9838 1.5069 TS056 21
22 TS429 77.4650 69.0140 0.7446 0.7790 77.7000 71.4400 0.7978 1.2591 TS429 22
23 TS248 77.3470 66.3930 0.7178 0.2604 77.3470 66.3930 0.7178 0.2604 TS248 23
24 TS037 77.2300 66.4320 0.6913 0.2681 80.2820 73.3960 1.3829 1.6462 TS037 24
25 TS452 77.2300 64.0060 0.6913 -0.2120 77.5820 72.4960 0.7711 1.4681 TS452 25
26 TS113 77.1130 72.7310 0.6648 1.5146 77.1130 72.7310 0.6648 1.5146 TS113 26
27 TS088 77.1130 71.7920 0.6648 1.3288 77.7000 72.3000 0.7978 1.4293 TS088 27
28 TS407 77.1130 64.6710 0.6648 -0.0804 78.5210 66.5100 0.9838 0.2835 TS407 28
29 TS002 77.1130 64.6710 0.6648 -0.0804 78.7560 72.3400 1.0371 1.4372 TS002 29
30 TS215 77.1130 63.4190 0.6648 -0.3281 77.1130 69.8360 0.6648 0.9417 TS215 30
31 TS129 76.9950 71.8310 0.6380 1.3365 76.9950 71.8310 0.6380 1.3365 TS129 31
32 TS291 76.9950 65.7280 0.6380 0.1288 76.9950 65.7280 0.6380 0.1288 TS291 32
33 TS276 76.8780 66.2360 0.6115 0.2293 76.8780 66.2360 0.6115 0.2293 TS276 33
34 TS077 76.8780 66.2360 0.6115 0.2293 76.8780 66.2360 0.6115 0.2293 TS077 34
35 TS286 76.8780 66.2360 0.6115 0.2293 76.8780 66.2360 0.6115 0.2293 TS286 35
36 TS213 76.8780 65.4540 0.6115 0.0746 76.8780 66.3930 0.6115 0.2604 TS213 36
37 TS345 76.7610 68.2320 0.5850 0.6243 78.9910 68.2320 1.0904 0.6243 TS345 37
38 TS080 76.7610 65.3360 0.5850 0.0512 77.1130 70.1880 0.6648 1.0114 TS080 38
39 TS476 76.6430 70.9310 0.5583 1.1584 78.0520 71.5570 0.8776 1.2823 TS476 39
40 TS171 76.6430 70.9310 0.5583 1.1584 76.6430 70.9310 0.5583 1.1584 TS171 40
41 TS366 76.5260 70.1880 0.5318 1.0114 77.3470 70.1880 0.7178 1.0114 TS366 41
42 TS063 76.5260 70.1880 0.5318 1.0114 76.9950 70.5400 0.6380 1.0810 TS063 42
43 TS302 76.5260 67.0580 0.5318 0.3920 76.5260 67.0580 0.5318 0.3920 TS302 43
44 TS142 76.5260 67.0580 0.5318 0.3920 76.5260 67.0580 0.5318 0.3920 TS142 44
45 TS001 76.5260 67.0580 0.5318 0.3920 76.5260 68.9360 0.5318 0.7636 TS001 45
46 TS207 76.0560 70.4230 0.4253 1.0579 76.9950 71.5960 0.6380 1.2900 TS207 46
47 TS296 76.0560 68.9360 0.4253 0.7636 77.2300 68.9360 0.6913 0.7636 TS296 47
48 TS208 75.7040 69.1310 0.3455 0.8022 77.9340 69.7970 0.8508 0.9340 TS208 48
49 TS470 75.7040 64.3580 0.3455 -0.1423 75.7040 69.7180 0.3455 0.9184 TS470 49
50 TS018 75.5870 66.4320 0.3190 0.2681 75.5870 66.4320 0.3190 0.2681 TS018 50
51 TS174 75.4690 69.5230 0.2922 0.8798 75.4690 69.5230 0.2922 0.8798 TS174 51
52 TS055 75.4690 66.9410 0.2922 0.3688 75.4690 66.9410 0.2922 0.3688 TS055 52
53 TS047 74.6480 64.8670 0.1062 -0.0416 74.6480 64.8670 0.1062 -0.0416 TS047 53
54 TS253 74.4130 60.5630 0.0529 -0.8933 76.0560 67.8400 0.4253 0.5467 TS253 54
55 TS275 74.1780 66.7450 -0.0003 0.3300 74.1780 66.7450 -0.0003 0.3300 TS275 55
56 TS074 73.9440 67.7620 -0.0533 0.5313 73.9440 67.7620 -0.0533 0.5313 TS074 56
57 TS319 73.9440 66.2750 -0.0533 0.2370 73.9440 67.4490 -0.0533 0.4694 TS319 57
58 TS273 73.9440 66.2750 -0.0533 0.2370 76.5260 67.4490 0.5318 0.4694 TS273 58
59 TS435 73.9440 61.5020 -0.0533 -0.7075 74.1780 64.0060 -0.0003 -0.2120 TS435 59
60 TS228 73.8260 62.9500 -0.0801 -0.4209 73.8260 69.6790 -0.0801 0.9106 TS228 60
61 TS127 73.5230 66.9320 -0.1487 0.3670 76.2910 66.9320 0.4785 0.3670 TS127 61
62 TS328 73.4740 64.1630 -0.1598 -0.1809 73.4740 64.1630 -0.1598 -0.1809 TS328 62
63 TS391 73.3570 67.0970 -0.1863 0.3997 73.3570 67.0970 -0.1863 0.3997 TS391 63
64 TS436 73.3570 66.0020 -0.1863 0.1830 73.8260 67.9190 -0.0801 0.5624 TS436 64
65 TS304 73.3570 64.3580 -0.1863 -0.1423 76.9950 69.0140 0.6380 0.7790 TS304 65
66 TS321 73.2390 68.2320 -0.2131 0.6243 80.7510 73.1610 1.4892 1.5997 TS321 66
67 TS165 73.2390 64.9450 -0.2131 -0.0261 74.1780 65.3360 -0.0003 0.0512 TS165 67
68 TS245 72.8870 64.0450 -0.2929 -0.2042 72.8870 64.0450 -0.2929 -0.2042 TS245 68
69 TS457 72.8870 61.8540 -0.2929 -0.6378 74.7650 69.1310 0.1327 0.8022 TS457 69
70 TS419 72.8870 61.8540 -0.2929 -0.6378 79.9300 73.5130 1.3031 1.6693 TS419 70
71 TS189 72.7700 65.1020 -0.3194 0.0049 74.2960 69.4050 0.0264 0.8564 TS189 71
72 TS395 72.7700 64.9450 -0.3194 -0.0261 75.8220 69.0530 0.3722 0.7868 TS395 72
73 TS117 72.6530 66.1580 -0.3459 0.2139 72.7700 66.1580 -0.3194 0.2139 TS117 73
74 TS314 72.6530 64.9060 -0.3459 -0.0339 72.6530 64.9060 -0.3459 -0.0339 TS314 74
75 TS220 72.5350 66.3540 -0.3726 0.2527 76.5260 67.0580 0.5318 0.3920 TS220 75
76 TS447 72.5350 66.3540 -0.3726 0.2527 76.5260 67.0580 0.5318 0.3920 TS447 76
77 TS102 72.1830 64.0450 -0.4524 -0.2042 74.6480 67.9190 0.1062 0.5624 TS102 77
78 TS028 71.9480 60.8370 -0.5056 -0.8391 74.5310 67.0970 0.0797 0.3997 TS028 78
79 TS244 70.8920 63.5370 -0.7449 -0.3048 70.8920 63.5370 -0.7449 -0.3048 TS244 79
80 TS026 70.7750 59.1160 -0.7714 -1.1796 72.3000 64.0450 -0.4259 -0.2042 TS026 80
81 TS103 69.9530 61.7370 -0.9577 -0.6610 71.5960 63.6930 -0.5854 -0.2739 TS103 81
82 TS035 69.3660 57.3940 -1.0907 -1.5204 69.3660 57.3940 -1.0907 -1.5204 TS035 82
83 TS289 66.0800 57.8250 -1.8354 -1.4351 66.0800 57.8250 -1.8354 -1.4351 TS289 83
84 TS307 65.8450 54.8120 -1.8886 -2.0313 66.4320 55.9080 -1.7556 -1.8144 TS307 84
85 TS250 61.3850 49.6480 -2.8993 -3.0532 71.7140 64.3970 -0.5587 -0.1346 TS250 85
86 AL285 60.6810 56.0640 -3.0588 -1.7836 65.2580 58.9590 -2.0216 -1.2107 AL285 86
87 AL396 45.6570 39.3580 -6.4633 -5.0894 67.0190 59.8980 -1.6226 -1.0249 AL396 87
88 TS014 29.1080 20.2660 -10.2134 -8.8674 29.1080 20.2660 -10.2134 -8.8674 TS014 88
89 TS350 21.5960 21.0880 -11.9157 -8.7047 24.7650 22.1050 -11.1976 -8.5035 TS350 89
90 TS355 14.5540 12.3240 -13.5115 -10.4390 15.7280 14.5150 -13.2454 -10.0054 TS355 90
91 RANDOM 14.10 12.02 -13.6143 -10.4991 14.10 12.02 -13.6143 -10.4991 RANDOM 91
92 TS229 13.1820 11.2880 -13.8224 -10.6440 14.2020 11.2880 -13.5912 -10.6440 TS229 92
93 TS257 12.7270 12.1210 -13.9255 -10.4791 15.8450 14.2050 -13.2189 -10.0668 TS257 93
94 TS362 8.4510 7.2770 -14.8944 -11.4377 8.8030 7.2770 -14.8147 -11.4377 TS362 94
95 TS009             -13.6143 -10.4991             -13.6143 -10.4991 TS009 95
96 TS016             -13.6143 -10.4991             -13.6143 -10.4991 TS016 96
97 TS020             -13.6143 -10.4991             -13.6143 -10.4991 TS020 97
98 TS029             -13.6143 -10.4991             -13.6143 -10.4991 TS029 98
99 TS033             -13.6143 -10.4991             -13.6143 -10.4991 TS033 99
100 TS039             -13.6143 -10.4991             -13.6143 -10.4991 TS039 100
101 TS042             -13.6143 -10.4991             -13.6143 -10.4991 TS042 101
102 TS044             -13.6143 -10.4991             -13.6143 -10.4991 TS044 102
103 TS045             -13.6143 -10.4991             -13.6143 -10.4991 TS045 103
104 TS060             -13.6143 -10.4991             -13.6143 -10.4991 TS060 104
105 TS061             -13.6143 -10.4991             -13.6143 -10.4991 TS061 105
106 TS075             -13.6143 -10.4991             -13.6143 -10.4991 TS075 106
107 TS083             -13.6143 -10.4991             -13.6143 -10.4991 TS083 107
108 TS084             -13.6143 -10.4991             -13.6143 -10.4991 TS084 108
109 TS086             -13.6143 -10.4991             -13.6143 -10.4991 TS086 109
110 TS096             -13.6143 -10.4991             -13.6143 -10.4991 TS096 110
111 TS105             -13.6143 -10.4991             -13.6143 -10.4991 TS105 111
112 TS110             -13.6143 -10.4991             -13.6143 -10.4991 TS110 112
113 TS140             -13.6143 -10.4991             -13.6143 -10.4991 TS140 113
114 TS147             -13.6143 -10.4991             -13.6143 -10.4991 TS147 114
115 TS149             -13.6143 -10.4991             -13.6143 -10.4991 TS149 115
116 TS150             -13.6143 -10.4991             -13.6143 -10.4991 TS150 116
117 TS152             -13.6143 -10.4991             -13.6143 -10.4991 TS152 117
118 TS153             -13.6143 -10.4991             -13.6143 -10.4991 TS153 118
119 TS154             -13.6143 -10.4991             -13.6143 -10.4991 TS154 119
120 TS160             -13.6143 -10.4991             -13.6143 -10.4991 TS160 120
121 TS170             -13.6143 -10.4991             -13.6143 -10.4991 TS170 121
122 TS172             -13.6143 -10.4991             -13.6143 -10.4991 TS172 122
123 TS178             -13.6143 -10.4991             -13.6143 -10.4991 TS178 123
124 TS180             -13.6143 -10.4991             -13.6143 -10.4991 TS180 124
125 TS182             -13.6143 -10.4991             -13.6143 -10.4991 TS182 125
126 TS184             -13.6143 -10.4991             -13.6143 -10.4991 TS184 126
127 TS186             -13.6143 -10.4991             -13.6143 -10.4991 TS186 127
128 TS192             -13.6143 -10.4991             -13.6143 -10.4991 TS192 128
129 TS199             -13.6143 -10.4991             -13.6143 -10.4991 TS199 129
130 TS200             -13.6143 -10.4991             -13.6143 -10.4991 TS200 130
131 TS206             -13.6143 -10.4991             -13.6143 -10.4991 TS206 131
132 TS240             -13.6143 -10.4991             -13.6143 -10.4991 TS240 132
133 TS242             -13.6143 -10.4991             -13.6143 -10.4991 TS242 133
134 TS254             -13.6143 -10.4991             -13.6143 -10.4991 TS254 134
135 TS261             -13.6143 -10.4991             -13.6143 -10.4991 TS261 135
136 TS263             -13.6143 -10.4991             -13.6143 -10.4991 TS263 136
137 TS264             -13.6143 -10.4991             -13.6143 -10.4991 TS264 137
138 TS269             -13.6143 -10.4991             -13.6143 -10.4991 TS269 138
139 TS278             -13.6143 -10.4991             -13.6143 -10.4991 TS278 139
140 TS279             -13.6143 -10.4991             -13.6143 -10.4991 TS279 140
141 TS282             -13.6143 -10.4991             -13.6143 -10.4991 TS282 141
142 TS295             -13.6143 -10.4991             -13.6143 -10.4991 TS295 142
143 TS297             -13.6143 -10.4991             -13.6143 -10.4991 TS297 143
144 TS299             -13.6143 -10.4991             -13.6143 -10.4991 TS299 144
145 TS300             -13.6143 -10.4991             -13.6143 -10.4991 TS300 145
146 TS301             -13.6143 -10.4991             -13.6143 -10.4991 TS301 146
147 TS311             -13.6143 -10.4991             -13.6143 -10.4991 TS311 147
148 TS316             -13.6143 -10.4991             -13.6143 -10.4991 TS316 148
149 TS322             -13.6143 -10.4991             -13.6143 -10.4991 TS322 149
150 TS324             -13.6143 -10.4991             -13.6143 -10.4991 TS324 150
151 TS330             -13.6143 -10.4991             -13.6143 -10.4991 TS330 151
152 TS331             -13.6143 -10.4991             -13.6143 -10.4991 TS331 152
153 TS333             -13.6143 -10.4991             -13.6143 -10.4991 TS333 153
154 TS336             -13.6143 -10.4991             -13.6143 -10.4991 TS336 154
155 TS347             -13.6143 -10.4991             -13.6143 -10.4991 TS347 155
156 TS353             -13.6143 -10.4991             -13.6143 -10.4991 TS353 156
157 TS358             -13.6143 -10.4991             -13.6143 -10.4991 TS358 157
158 TS360             -13.6143 -10.4991             -13.6143 -10.4991 TS360 158
159 TS365             -13.6143 -10.4991             -13.6143 -10.4991 TS365 159
160 TS373             -13.6143 -10.4991             -13.6143 -10.4991 TS373 160
161 TS382             -13.6143 -10.4991             -13.6143 -10.4991 TS382 161
162 TS386             -13.6143 -10.4991             -13.6143 -10.4991 TS386 162
163 TS399             -13.6143 -10.4991             -13.6143 -10.4991 TS399 163
164 TS400             -13.6143 -10.4991             -13.6143 -10.4991 TS400 164
165 TS402             -13.6143 -10.4991             -13.6143 -10.4991 TS402 165
166 TS403             -13.6143 -10.4991             -13.6143 -10.4991 TS403 166
167 TS408             -13.6143 -10.4991             -13.6143 -10.4991 TS408 167
168 TS418             -13.6143 -10.4991             -13.6143 -10.4991 TS418 168
169 TS423             -13.6143 -10.4991             -13.6143 -10.4991 TS423 169
170 TS424             -13.6143 -10.4991             -13.6143 -10.4991 TS424 170
171 TS433             -13.6143 -10.4991             -13.6143 -10.4991 TS433 171
172 TS439             -13.6143 -10.4991             -13.6143 -10.4991 TS439 172
173 TS444             -13.6143 -10.4991             -13.6143 -10.4991 TS444 173
174 TS450             -13.6143 -10.4991             -13.6143 -10.4991 TS450 174
175 TS458             -13.6143 -10.4991             -13.6143 -10.4991 TS458 175
176 TS461             -13.6143 -10.4991             -13.6143 -10.4991 TS461 176
177 TS477             -13.6143 -10.4991             -13.6143 -10.4991 TS477 177
178 TS484             -13.6143 -10.4991             -13.6143 -10.4991 TS484 178