T0618

Targets
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539 540 541 542
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551 552 553 554
555 556 557 558
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639 640 641 642
643      

T0618

3NRH from Bacteroides fragilis

Target type: Human/Server

Target sequence:

>T0618 3NRH, Bacteroides fragilis, 182 residues
MKKESQVIFDKNVIEFVTVAAEFCAFLERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIFVFQLGLNETMNDSLAICQENFGLLWGQKLVNTMRALHDVKYSPKARLEHHHHHH

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: NESG
PDB ID: 3nrh

Jmol of T0618 structure : 3nrh

PyMOL of T0618

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0618A6-1756-175
T0618B6-1706-170

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Hard target for me. It might be like Peroxisomal acyl-CoA oxidase-II, domains 3 and 4.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

2ddh_A | PyMOL of 2ddh A 475-655

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

N-terminal has some similarity with Acyl-CoA oxidase (PF01756).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0618 T0618 T0618 T0618
First score First Z-score Best score Best Z-score
1 TS408 40.6250 36.4580 2.4653 3.1779 40.6250 36.4580 2.4653 3.1779 TS408 1
2 TS470 40.2960 29.5500 2.4161 1.8580 40.2960 31.2500 2.4161 2.1828 TS470 2
3 TS088 39.9670 29.2210 2.3669 1.7951 39.9670 35.9100 2.3669 3.0732 TS088 3
4 TS094 39.8030 31.2500 2.3424 2.1828 40.2960 31.2500 2.4161 2.1828 TS094 4
5 TS096 39.4740 26.9740 2.2932 1.3658 39.4740 30.6470 2.2932 2.0676 TS096 5
6 TS407 39.1450 30.7020 2.2439 2.0781 39.8030 31.2500 2.3424 2.1828 TS407 6
7 TS361 38.8160 34.2110 2.1947 2.7485 38.9800 34.2110 2.2193 2.7485 TS361 7
8 TS113 38.8160 32.5660 2.1947 2.4342 39.8030 32.8950 2.3424 2.4971 TS113 8
9 TS386 38.4870 33.8820 2.1455 2.6857 39.6380 33.8820 2.3177 2.6857 TS386 9
10 TS382 37.3360 32.2920 1.9734 2.3819 37.3360 34.1010 1.9734 2.7275 TS382 10
11 TS295 36.6780 24.8360 1.8750 0.9573 36.6780 26.3160 1.8750 1.2401 TS295 11
12 TS060 36.6780 24.7260 1.8750 0.9363 40.2960 29.5500 2.4161 1.8580 TS060 12
13 TS423 36.5130 25.2740 1.8503 1.0410 36.5130 25.2740 1.8503 1.0410 TS423 13
14 TS192 36.3490 25.0550 1.8258 0.9991 36.3490 25.0550 1.8258 0.9991 TS192 14
15 TS300 36.1840 26.4250 1.8011 1.2609 39.8030 31.2500 2.3424 2.1828 TS300 15
16 TS240 36.1840 26.4250 1.8011 1.2609 36.1840 26.4250 1.8011 1.2609 TS240 16
17 TS428 36.1840 26.4250 1.8011 1.2609 39.8030 31.2500 2.3424 2.1828 TS428 17
18 TS490 36.0200 26.4800 1.7766 1.2714 36.0200 26.4800 1.7766 1.2714 TS490 18
19 TS458 34.8680 29.1670 1.6043 1.7848 35.5260 32.6750 1.7027 2.4551 TS458 19
20 TS450 33.0590 24.7260 1.3338 0.9363 33.0590 24.7260 1.3338 0.9363 TS450 20
21 TS102 32.2370 22.9170 1.2109 0.5906 32.5950 24.6840 1.2644 0.9283 TS102 21
22 TS033 31.7430 25.9320 1.1370 1.1667 31.7430 25.9320 1.1370 1.1667 TS033 22
23 TS299 31.7430 21.3270 1.1370 0.2869 31.7430 25.9320 1.1370 1.1667 TS299 23
24 TS360 31.5790 30.2080 1.1125 1.9837 31.7430 30.2080 1.1370 1.9837 TS360 24
25 TS400 31.5790 27.3030 1.1125 1.4287 36.1840 29.3860 1.8011 1.8266 TS400 25
26 TS457 30.5920 25.1100 0.9649 1.0097 37.8290 31.5790 2.0471 2.2457 TS457 26
27 TS418 30.2630 28.7280 0.9157 1.7009 30.9210 28.7280 1.0141 1.7009 TS418 27
28 TS380 29.9050 26.1080 0.8621 1.2003 41.9410 32.7300 2.6621 2.4656 TS380 28
29 TS037 29.7700 25.8220 0.8419 1.1457 36.0200 25.8220 1.7766 1.1457 TS037 29
30 TS402 29.4410 21.1620 0.7927 0.2553 36.1840 25.7130 1.8011 1.1249 TS402 30
31 TS316 29.1120 27.2480 0.7435 1.4181 29.1120 27.2480 0.7435 1.4181 TS316 31
32 TS166 28.9470 22.5330 0.7189 0.5173 28.9470 24.4520 0.7189 0.8839 TS166 32
33 TS355 28.7830 25.6030 0.6943 1.1038 28.7830 25.6030 0.6943 1.1038 TS355 33
34 TS170 28.6180 26.8090 0.6697 1.3343 28.6180 26.8090 0.6697 1.3343 TS170 34
35 TS077 28.6180 21.4910 0.6697 0.3182 28.6180 21.4910 0.6697 0.3182 TS077 35
36 TS424 28.4540 25.1640 0.6451 1.0200 30.2630 25.1640 0.9157 1.0200 TS424 36
37 TS016 28.2890 20.7790 0.6205 0.1822 28.2890 24.6710 0.6205 0.9258 TS016 37
38 TS253 28.1250 22.8620 0.5959 0.5801 35.6910 27.7960 1.7274 1.5229 TS253 38
39 TS429 27.4670 22.3680 0.4975 0.4858 28.6180 23.3000 0.6697 0.6638 TS429 39
40 TS114 27.1380 21.9850 0.4483 0.4126 29.4410 24.0680 0.7927 0.8106 TS114 40
41 TS302 27.1380 15.6250 0.4483 -0.8026 27.1380 21.5460 0.4483 0.3287 TS302 41
42 TS142 27.1380 15.6250 0.4483 -0.8026 27.1380 21.5460 0.4483 0.3287 TS142 42
43 TS276 26.9740 22.1490 0.4238 0.4439 26.9740 22.1490 0.4238 0.4439 TS276 43
44 TS286 26.9740 22.1490 0.4238 0.4439 26.9740 22.1490 0.4238 0.4439 TS286 44
45 TS149 26.9740 22.1490 0.4238 0.4439 26.9740 22.1490 0.4238 0.4439 TS149 45
46 TS477 26.9740 22.0390 0.4238 0.4229 27.8480 22.9960 0.5545 0.6057 TS477 46
47 TS365 26.8090 21.1070 0.3991 0.2448 26.8090 21.1070 0.3991 0.2448 TS365 47
48 TS419 26.7410 22.4160 0.3890 0.4949 36.1840 26.4250 1.8011 1.2609 TS419 48
49 TS484 26.6450 21.3820 0.3746 0.2974 37.5000 31.5790 1.9979 2.2457 TS484 49
50 TS297 26.4800 21.5460 0.3499 0.3287 26.4800 23.0260 0.3499 0.6115 TS297 50
51 TS042 26.3160 21.6010 0.3254 0.3392 26.3160 21.6010 0.3254 0.3392 TS042 51
52 TS104 26.3160 18.9140 0.3254 -0.1742 30.3800 24.1230 0.9332 0.8211 TS104 52
53 TS242 25.9870 23.9580 0.2762 0.7895 25.9870 24.2320 0.2762 0.8419 TS242 53
54 TS395 25.8220 20.7790 0.2515 0.1822 29.2760 26.3710 0.7681 1.2506 TS395 54
55 TS366 25.4930 21.3270 0.2023 0.2869 27.1380 22.4230 0.4483 0.4963 TS366 55
56 TS319 25.1640 22.4780 0.1531 0.5068 25.3290 22.4780 0.1778 0.5068 TS319 56
57 TS056 25.1640 22.4780 0.1531 0.5068 25.1640 22.4780 0.1531 0.5068 TS056 57
58 TS273 25.1640 22.4780 0.1531 0.5068 25.3290 22.4780 0.1778 0.5068 TS273 58
59 TS055 24.8360 20.2300 0.1041 0.0773 29.6050 23.4100 0.8173 0.6848 TS055 59
60 TS002 24.6710 18.2570 0.0794 -0.2997 24.6710 19.5180 0.0794 -0.0588 TS002 60
61 TS172 24.5250 21.9940 0.0576 0.4143 37.9930 29.9890 2.0717 1.9419 TS172 61
62 TS173 24.5070 19.5720 0.0549 -0.0485 24.5070 20.0110 0.0549 0.0354 TS173 62
63 TS047 24.3420 19.9010 0.0302 0.0144 24.3420 19.9010 0.0302 0.0144 TS047 63
64 TS018 24.0130 16.5570 -0.0190 -0.6245 24.0130 16.5570 -0.0190 -0.6245 TS018 64
65 TS321 23.8490 19.9560 -0.0435 0.0249 36.6780 24.8360 1.8750 0.9573 TS321 65
66 TS199 23.8490 19.7920 -0.0435 -0.0064 23.8490 19.7920 -0.0435 -0.0064 TS199 66
67 TS035 23.8490 18.3110 -0.0435 -0.2894 23.8490 18.3110 -0.0435 -0.2894 TS035 67
68 TS307 23.6840 19.2980 -0.0682 -0.1008 27.9610 22.6970 0.5714 0.5486 TS307 68
69 TS399 23.5760 19.4090 -0.0844 -0.0796 25.8220 22.4230 0.2515 0.4963 TS399 69
70 TS127 23.5200 21.6560 -0.0927 0.3497 23.5200 21.6560 -0.0927 0.3497 TS127 70
71 TS186 23.5200 17.3790 -0.0927 -0.4675 23.8490 20.6690 -0.0435 0.1611 TS186 71
72 TS236 23.1910 11.5680 -0.1419 -1.5777 23.1910 20.8330 -0.1419 0.1925 TS236 72
73 TS214 23.0260 18.6950 -0.1666 -0.2160 24.5070 18.6950 0.0549 -0.2160 TS214 73
74 TS435 22.8620 21.1620 -0.1911 0.2553 22.8620 21.1620 -0.1911 0.2553 TS435 74
75 TS063 22.8620 16.9960 -0.1911 -0.5406 25.1640 17.4340 0.1531 -0.4570 TS063 75
76 TS244 22.6970 19.1890 -0.2158 -0.1216 22.6970 19.1890 -0.2158 -0.1216 TS244 76
77 TS452 22.6970 18.4210 -0.2158 -0.2684 22.6970 20.6140 -0.2158 0.1506 TS452 77
78 TS110 22.6970 18.4210 -0.2158 -0.2684 36.1840 26.4250 1.8011 1.2609 TS110 78
79 TS045 22.6270 16.3500 -0.2263 -0.6641 32.5660 21.9850 1.2601 0.4126 TS045 79
80 TS200 22.5330 20.1750 -0.2403 0.0667 23.3550 20.1750 -0.1174 0.0667 TS200 80
81 TS026 22.5330 20.1750 -0.2403 0.0667 26.1510 24.6710 0.3007 0.9258 TS026 81
82 TS291 22.5330 16.2830 -0.2403 -0.6769 27.6320 22.0390 0.5222 0.4229 TS291 82
83 TS353 22.3680 18.0920 -0.2650 -0.3312 26.8090 21.1070 0.3991 0.2448 TS353 83
84 TS403 22.3680 10.8000 -0.2650 -1.7245 22.3680 11.0750 -0.2650 -1.6719 TS403 84
85 TS373 22.2040 13.3220 -0.2895 -1.2426 29.6050 25.6580 0.8173 1.1144 TS373 85
86 TS083 22.0390 18.7500 -0.3142 -0.2055 27.4670 21.1620 0.4975 0.2553 TS083 86
87 TS029 22.0390 17.9280 -0.3142 -0.3626 22.0390 17.9280 -0.3142 -0.3626 TS029 87
88 TS301 21.8750 12.8840 -0.3387 -1.3263 21.8750 12.8840 -0.3387 -1.3263 TS301 88
89 TS174 21.7110 19.2980 -0.3633 -0.1008 21.7110 19.4630 -0.3633 -0.0693 TS174 89
90 TS208 21.5460 17.3790 -0.3879 -0.4675 24.0130 19.5180 -0.0190 -0.0588 TS208 90
91 TS153 21.3820 17.8730 -0.4125 -0.3731 21.3820 17.8730 -0.4125 -0.3731 TS153 91
92 TS215 21.3820 17.7630 -0.4125 -0.3941 21.3820 17.7630 -0.4125 -0.3941 TS215 92
93 TS103 21.2170 17.8180 -0.4371 -0.3836 26.9740 23.9580 0.4238 0.7895 TS103 93
94 TS182 21.2170 10.3620 -0.4371 -1.8082 32.7300 24.2870 1.2846 0.8524 TS182 94
95 TS119 20.8880 18.4760 -0.4863 -0.2579 20.8880 18.4760 -0.4863 -0.2579 TS119 95
96 TS324 20.8880 15.6800 -0.4863 -0.7921 28.7830 25.6030 0.6943 1.1038 TS324 96
97 TS147 20.5590 16.5020 -0.5355 -0.6350 24.0130 17.5440 -0.0190 -0.4359 TS147 97
98 TS314 20.0660 19.6270 -0.6093 -0.0380 23.5200 19.6270 -0.0927 -0.0380 TS314 98
99 TS080 20.0660 17.4340 -0.6093 -0.4570 20.0660 17.4340 -0.6093 -0.4570 TS080 99
100 TS350 20.0660 16.7210 -0.6093 -0.5932 23.6840 21.5460 -0.0682 0.3287 TS350 100
101 TS420 19.5720 18.4760 -0.6831 -0.2579 19.5720 18.4760 -0.6831 -0.2579 TS420 101
102 TS476 19.5720 17.9280 -0.6831 -0.3626 19.5720 17.9280 -0.6831 -0.3626 TS476 102
103 TS275 19.4080 17.7080 -0.7077 -0.4046 19.4080 17.7080 -0.7077 -0.4046 TS275 103
104 TS328 19.4080 17.4340 -0.7077 -0.4570 19.4080 17.4340 -0.7077 -0.4570 TS328 104
105 TS248 19.4080 17.4340 -0.7077 -0.4570 20.2300 17.4340 -0.5847 -0.4570 TS248 105
106 TS001 19.4080 16.8860 -0.7077 -0.5617 25.3290 22.4780 0.1778 0.5068 TS001 106
107 TS449 19.0790 16.0090 -0.7569 -0.7292 19.0790 16.0090 -0.7569 -0.7292 TS449 107
108 TS453 19.0790 16.0090 -0.7569 -0.7292 19.0790 16.0090 -0.7569 -0.7292 TS453 108
109 TS346 19.0790 16.0090 -0.7569 -0.7292 19.0790 16.0090 -0.7569 -0.7292 TS346 109
110 TS391 19.0790 14.0350 -0.7569 -1.1064 19.0790 14.0350 -0.7569 -1.1064 TS391 110
111 TS028 18.9140 16.2830 -0.7815 -0.6769 18.9140 16.2830 -0.7815 -0.6769 TS028 111
112 TS257 18.9140 15.8440 -0.7815 -0.7608 23.4180 20.0420 -0.1080 0.0413 TS257 112
113 RANDOM 18.80 16.02 -0.7986 -0.7271 18.80 16.02 -0.7986 -0.7271 RANDOM 113
114 TS409 18.4210 17.8730 -0.8553 -0.3731 28.2890 22.5880 0.6205 0.5278 TS409 114
115 TS220 18.4210 17.6540 -0.8553 -0.4149 25.4930 21.5460 0.2023 0.3287 TS220 115
116 TS447 18.4210 17.6540 -0.8553 -0.4149 25.4930 21.5460 0.2023 0.3287 TS447 116
117 TS278 18.4210 17.1050 -0.8553 -0.5198 18.4210 17.1050 -0.8553 -0.5198 TS278 117
118 TS084 18.2570 13.6510 -0.8798 -1.1798 25.0000 23.7940 0.1286 0.7582 TS084 118
119 TS207 18.0920 13.7060 -0.9045 -1.1693 18.0920 15.2960 -0.9045 -0.8655 TS207 119
120 TS218 17.9280 16.7210 -0.9290 -0.5932 19.0790 16.7210 -0.7569 -0.5932 TS218 120
121 TS311 17.7630 14.8030 -0.9537 -0.9597 17.7630 15.2960 -0.9537 -0.8655 TS311 121
122 TS229 17.5990 15.8440 -0.9782 -0.7608 18.2570 16.3930 -0.8798 -0.6559 TS229 122
123 TS264 17.4340 14.9670 -1.0029 -0.9283 20.4110 17.2470 -0.5577 -0.4927 TS264 123
124 TS165 17.2700 16.8310 -1.0274 -0.5722 25.1640 22.6430 0.1531 0.5383 TS165 124
125 TS333 16.9410 14.3090 -1.0766 -1.0540 16.9410 15.2950 -1.0766 -0.8656 TS333 125
126 TS117 16.7760 13.5960 -1.1013 -1.1903 18.9140 17.9280 -0.7815 -0.3626 TS117 126
127 TS296 16.7760 13.3770 -1.1013 -1.2321 25.1640 22.4780 0.1531 0.5068 TS296 127
128 TS213 16.4470 16.1180 -1.1505 -0.7084 18.5860 16.8310 -0.8306 -0.5722 TS213 128
129 TS014 16.4470 15.2410 -1.1505 -0.8760 18.9140 18.5860 -0.7815 -0.2369 TS014 129
130 TS250 16.2830 15.6800 -1.1750 -0.7921 17.9280 17.2700 -0.9290 -0.4883 TS250 130
131 TS345 16.2830 14.4740 -1.1750 -1.0225 27.2150 22.9430 0.4598 0.5956 TS345 131
132 TS481 15.9540 14.2000 -1.2242 -1.0749 20.2300 17.2700 -0.5847 -0.4883 TS481 132
133 TS206 15.5060 14.5570 -1.2912 -1.0067 15.5060 14.5570 -1.2912 -1.0067 TS206 133
134 TS304 15.4610 12.6640 -1.2979 -1.3683 22.0390 19.0790 -0.3142 -0.1427 TS304 134
135 TS289 14.6380 12.3360 -1.4210 -1.4310 14.6380 12.3360 -1.4210 -1.4310 TS289 135
136 TS436 14.4740 13.2680 -1.4455 -1.2529 16.4470 15.3510 -1.1505 -0.8550 TS436 136
137 TS336 13.4870 12.5000 -1.5931 -1.3997 14.4740 13.7610 -1.4455 -1.1587 TS336 137
138 TS129 13.3220 11.1840 -1.6178 -1.6511 13.3220 11.1840 -1.6178 -1.6511 TS129 138
139 AL285 12.3360 11.4580 -1.7653 -1.5988 18.7500 16.8310 -0.8061 -0.5722 AL285 139
140 AL396 10.6010 10.1790 -2.0247 -1.8431 19.4080 18.2020 -0.7077 -0.3102 AL396 140
141 TS171 6.7430 6.0310 -2.6017 -2.6357 6.7430 6.0310 -2.6017 -2.6357 TS171 141
142 TS471 6.7430 6.0310 -2.6017 -2.6357 6.7430 6.0310 -2.6017 -2.6357 TS471 142
143 TS009             -0.7986 -0.7271             -0.7986 -0.7271 TS009 143
144 TS020             -0.7986 -0.7271             -0.7986 -0.7271 TS020 144
145 TS039             -0.7986 -0.7271             -0.7986 -0.7271 TS039 145
146 TS044             -0.7986 -0.7271             -0.7986 -0.7271 TS044 146
147 TS061             -0.7986 -0.7271             -0.7986 -0.7271 TS061 147
148 TS074             -0.7986 -0.7271             -0.7986 -0.7271 TS074 148
149 TS075             -0.7986 -0.7271             -0.7986 -0.7271 TS075 149
150 TS086             -0.7986 -0.7271             -0.7986 -0.7271 TS086 150
151 TS105             -0.7986 -0.7271             -0.7986 -0.7271 TS105 151
152 TS140             -0.7986 -0.7271             -0.7986 -0.7271 TS140 152
153 TS150             -0.7986 -0.7271             -0.7986 -0.7271 TS150 153
154 TS152             -0.7986 -0.7271             -0.7986 -0.7271 TS152 154
155 TS154             -0.7986 -0.7271             -0.7986 -0.7271 TS154 155
156 TS160             -0.7986 -0.7271             -0.7986 -0.7271 TS160 156
157 TS178             -0.7986 -0.7271             -0.7986 -0.7271 TS178 157
158 TS180             -0.7986 -0.7271             -0.7986 -0.7271 TS180 158
159 TS184             -0.7986 -0.7271             -0.7986 -0.7271 TS184 159
160 TS189             -0.7986 -0.7271             -0.7986 -0.7271 TS189 160
161 TS228             -0.7986 -0.7271             -0.7986 -0.7271 TS228 161
162 TS245             -0.7986 -0.7271             -0.7986 -0.7271 TS245 162
163 TS254             -0.7986 -0.7271             -0.7986 -0.7271 TS254 163
164 TS261             -0.7986 -0.7271             -0.7986 -0.7271 TS261 164
165 TS263             -0.7986 -0.7271             -0.7986 -0.7271 TS263 165
166 TS269             -0.7986 -0.7271             -0.7986 -0.7271 TS269 166
167 TS279             -0.7986 -0.7271             -0.7986 -0.7271 TS279 167
168 TS282             -0.7986 -0.7271             -0.7986 -0.7271 TS282 168
169 TS322             -0.7986 -0.7271             -0.7986 -0.7271 TS322 169
170 TS330             -0.7986 -0.7271             -0.7986 -0.7271 TS330 170
171 TS331             -0.7986 -0.7271             -0.7986 -0.7271 TS331 171
172 TS347             -0.7986 -0.7271             -0.7986 -0.7271 TS347 172
173 TS358             -0.7986 -0.7271             -0.7986 -0.7271 TS358 173
174 TS362             -0.7986 -0.7271             -0.7986 -0.7271 TS362 174
175 TS433             -0.7986 -0.7271             -0.7986 -0.7271 TS433 175
176 TS439             -0.7986 -0.7271             -0.7986 -0.7271 TS439 176
177 TS444             -0.7986 -0.7271             -0.7986 -0.7271 TS444 177
178 TS461             -0.7986 -0.7271             -0.7986 -0.7271 TS461 178