T0605

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0605

3NMD from unknown species

Target type: Human/Server

Target sequence:

>T0605 3NMD, unknown species, 72 residues
MRGSHHHHHHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIRP

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: Non-SGI research Centers and others
PDB ID: 3nmd

Jmol of T0605 structure : 3nmd

PyMOL of T0605

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0605A2-5419-71
T0605B4-5021-67
T0605C1-5318-70
T0605D2-5119-68
T0605E3-5320-70

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

two antiparallel helices, Coiled-coil?, and first helix is very long. No good template available.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1zxa_A | PyMOL of 1zxa A, This template only has local similarity to the target seq (35-end).

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

No confident matches available.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0605 T0605 T0605 T0605
First score First Z-score Best score Best Z-score
1 TS297 99.0200 99.0200 1.5916 1.7010 99.0200 99.0200 1.5916 1.7010 TS297 1
2 TS096 98.9360 98.9360 1.5875 1.6970 98.9360 98.9360 1.5875 1.6970 TS096 2
3 TS307 97.8720 97.8720 1.5344 1.6467 98.4040 98.0500 1.5609 1.6551 TS307 3
4 TS386 97.3400 97.3400 1.5079 1.6216 98.9360 98.9360 1.5875 1.6970 TS386 4
5 TS429 97.3400 96.9860 1.5079 1.6049 97.3400 97.3400 1.5079 1.6216 TS429 5
6 TS418 96.8090 96.8090 1.4814 1.5965 96.8090 96.8090 1.4814 1.5965 TS418 6
7 TS094 96.8090 96.8090 1.4814 1.5965 98.4040 98.0500 1.5609 1.6551 TS094 7
8 TS380 96.8090 96.8090 1.4814 1.5965 96.8090 96.8090 1.4814 1.5965 TS380 8
9 TS407 96.8090 96.8090 1.4814 1.5965 97.8720 97.8720 1.5344 1.6467 TS407 9
10 TS110 96.8090 96.8090 1.4814 1.5965 96.8090 96.8090 1.4814 1.5965 TS110 10
11 TS192 96.8090 94.6810 1.4814 1.4960 96.8090 94.6810 1.4814 1.4960 TS192 11
12 TS172 96.5690 96.2420 1.4694 1.5697 96.5690 96.2420 1.4694 1.5697 TS172 12
13 TS045 96.2770 95.9220 1.4549 1.5546 96.2770 95.9220 1.4549 1.5546 TS045 13
14 TS127 96.2770 95.5670 1.4549 1.5378 98.4040 98.0500 1.5609 1.6551 TS127 14
15 TS402 96.0000 91.6670 1.4410 1.3536 96.0000 93.0850 1.4410 1.4206 TS402 15
16 TS449 96.0000 91.6670 1.4410 1.3536 96.0000 91.6670 1.4410 1.3536 TS449 16
17 TS453 96.0000 91.6670 1.4410 1.3536 96.0000 91.6670 1.4410 1.3536 TS453 17
18 TS346 96.0000 91.6670 1.4410 1.3536 96.0000 91.6670 1.4410 1.3536 TS346 18
19 TS400 94.6810 94.6810 1.3753 1.4960 94.6810 94.6810 1.3753 1.4960 TS400 19
20 TS016 93.6270 93.3010 1.3227 1.4308 96.2770 96.2770 1.4549 1.5714 TS016 20
21 TS240 93.6170 93.6170 1.3222 1.4457 93.6170 93.6170 1.3222 1.4457 TS240 21
22 TS399 93.6170 93.6170 1.3222 1.4457 97.8720 97.8720 1.5344 1.6467 TS399 22
23 TS428 93.6170 93.6170 1.3222 1.4457 93.6170 93.6170 1.3222 1.4457 TS428 23
24 TS113 92.5530 92.5530 1.2692 1.3954 96.2770 96.2770 1.4549 1.5714 TS113 24
25 TS321 92.5000 90.5000 1.2665 1.2984 92.5000 90.5000 1.2665 1.2984 TS321 25
26 TS458 92.0210 91.6670 1.2426 1.3536 92.0210 91.6670 1.2426 1.3536 TS458 26
27 TS218 91.1760 91.1760 1.2005 1.3304 91.1760 91.1760 1.2005 1.3304 TS218 27
28 TS360 90.5000 88.8330 1.1668 1.2197 90.5000 88.8330 1.1668 1.2197 TS360 28
29 TS361 90.4260 90.4260 1.1631 1.2949 96.8090 96.0990 1.4814 1.5630 TS361 29
30 TS395 90.4260 87.5890 1.1631 1.1609 92.0210 92.0210 1.2426 1.3703 TS395 30
31 TS470 89.8940 89.5390 1.1366 1.2530 95.0000 94.3330 1.3912 1.4795 TS470 31
32 TS299 89.5000 85.8330 1.1169 1.0779 93.1370 92.1570 1.2983 1.3767 TS299 32
33 TS295 89.3620 88.2980 1.1100 1.1944 89.3620 88.2980 1.1100 1.1944 TS295 33
34 TS083 87.7660 84.5740 1.0305 1.0185 89.3620 87.2340 1.1100 1.1441 TS083 34
35 TS253 87.5000 84.8330 1.0172 1.0307 87.7660 87.0570 1.0305 1.1358 TS253 35
36 TS457 87.2340 86.5250 1.0039 1.1106 93.6170 93.6170 1.3222 1.4457 TS457 36
37 TS147 86.1700 82.9790 0.9509 0.9431 87.2340 85.1060 1.0039 1.0436 TS147 37
38 TS080 85.6380 83.1560 0.9243 0.9515 85.6380 83.1560 0.9243 0.9515 TS080 38
39 TS119 85.6380 83.1560 0.9243 0.9515 85.6380 83.1560 0.9243 0.9515 TS119 39
40 TS282 85.6380 80.3190 0.9243 0.8174 85.6380 80.3190 0.9243 0.8174 TS282 40
41 TS300 85.1060 74.1130 0.8978 0.5242 85.1060 81.9150 0.8978 0.8928 TS300 41
42 TS173 84.0430 81.9150 0.8448 0.8928 84.0430 81.9150 0.8448 0.8928 TS173 42
43 TS056 84.0430 81.9150 0.8448 0.8928 84.0430 81.9150 0.8448 0.8928 TS056 43
44 TS174 84.0430 40.4260 0.8448 -1.0673 84.0430 40.4260 0.8448 -1.0673 TS174 44
45 TS114 83.5110 79.2550 0.8183 0.7672 95.5000 94.8330 1.4161 1.5031 TS114 45
46 TS165 82.9790 79.7870 0.7918 0.7923 93.6170 93.2620 1.3222 1.4289 TS165 46
47 TS129 82.9790 78.3690 0.7918 0.7253 82.9790 78.3690 0.7918 0.7253 TS129 47
48 TS366 82.5000 79.1670 0.7679 0.7630 89.6230 85.5350 1.1231 1.0639 TS366 48
49 TS236 81.9150 72.6950 0.7387 0.4572 95.0000 94.3330 1.3912 1.4795 TS236 49
50 TS063 81.3830 73.2270 0.7122 0.4824 81.5000 73.2270 0.7180 0.4824 TS063 50
51 TS419 80.5000 74.8330 0.6681 0.5582 93.6170 93.6170 1.3222 1.4457 TS419 51
52 TS314 80.3190 77.8370 0.6591 0.7002 81.9150 80.1420 0.7387 0.8091 TS314 52
53 TS149 80.3190 77.8370 0.6591 0.7002 80.3190 77.8370 0.6591 0.7002 TS149 53
54 TS242 80.3190 75.0000 0.6591 0.5661 84.5740 80.3190 0.8713 0.8174 TS242 54
55 TS452 79.7870 75.8870 0.6326 0.6080 79.7870 75.8870 0.6326 0.6080 TS452 55
56 TS319 79.5000 70.5000 0.6183 0.3535 85.1060 77.6600 0.8978 0.6918 TS319 56
57 TS477 79.2550 78.9010 0.6061 0.7504 79.2550 78.9010 0.6061 0.7504 TS477 57
58 TS435 79.2550 78.9010 0.6061 0.7504 79.2550 78.9010 0.6061 0.7504 TS435 58
59 TS276 78.7230 73.7590 0.5795 0.5075 79.2550 76.4180 0.6061 0.6331 TS276 59
60 TS077 78.7230 73.7590 0.5795 0.5075 79.2550 76.4180 0.6061 0.6331 TS077 60
61 TS286 78.7230 73.7590 0.5795 0.5075 79.2550 76.4180 0.6061 0.6331 TS286 61
62 TS215 78.5000 68.1670 0.5684 0.2433 78.5000 71.0990 0.5684 0.3818 TS215 62
63 TS208 77.6600 73.0500 0.5265 0.4740 77.6600 73.0500 0.5265 0.4740 TS208 63
64 TS229 77.6600 70.9220 0.5265 0.3735 77.6600 70.9220 0.5265 0.3735 TS229 64
65 TS481 77.5000 72.5000 0.5185 0.4480 83.0000 80.3330 0.7928 0.8181 TS481 65
66 TS333 76.5960 57.8010 0.4735 -0.2464 76.5960 57.8010 0.4735 -0.2464 TS333 66
67 TS278 75.9800 69.1180 0.4427 0.2882 75.9800 69.1180 0.4427 0.2882 TS278 67
68 TS033 74.5100 66.9930 0.3694 0.1878 93.6170 93.6170 1.3222 1.4457 TS033 68
69 TS182 74.0200 44.6080 0.3450 -0.8697 75.0000 53.3690 0.3939 -0.4558 TS182 69
70 TS409 73.9360 68.6170 0.3408 0.2646 73.9360 68.6170 0.3408 0.2646 TS409 70
71 AL285 72.8720 72.5180 0.2878 0.4489 84.5740 72.5180 0.8713 0.4489 AL285 71
72 TS160 72.8720 69.3260 0.2878 0.2981 72.8720 71.6310 0.2878 0.4070 TS160 72
73 TS002 72.3400 58.1560 0.2612 -0.2297 83.5110 75.3550 0.8183 0.5829 TS002 73
74 TS301 71.2770 71.2770 0.2082 0.3902 71.2770 71.2770 0.2082 0.3902 TS301 74
75 TS104 70.7450 70.7450 0.1817 0.3651 97.3400 97.3400 1.5079 1.6216 TS104 75
76 TS273 69.1490 62.7660 0.1021 -0.0119 79.5000 70.5000 0.6183 0.3535 TS273 76
77 TS001 69.1490 62.7660 0.1021 -0.0119 70.7450 70.3900 0.1817 0.3483 TS001 77
78 TS296 69.1490 62.7660 0.1021 -0.0119 73.9360 70.3900 0.3408 0.3483 TS296 78
79 TS490 68.6170 62.2340 0.0756 -0.0370 87.2340 86.5250 1.0039 1.1106 TS490 79
80 TS476 67.5530 66.8440 0.0225 0.1808 67.5530 66.8440 0.0225 0.1808 TS476 80
81 TS420 67.5530 66.8440 0.0225 0.1808 67.5530 66.8440 0.0225 0.1808 TS420 81
82 TS171 67.5530 66.8440 0.0225 0.1808 67.5530 66.8440 0.0225 0.1808 TS171 82
83 TS471 67.5530 66.8440 0.0225 0.1808 67.5530 66.8440 0.0225 0.1808 TS471 83
84 RANDOM 67.23 65.47 0.0064 0.1159 67.23 65.47 0.0064 0.1159 RANDOM 84
85 TS275 67.0210 58.8650 -0.0040 -0.1962 85.1060 74.1130 0.8978 0.5242 TS275 85
86 TS403 67.0000 59.6670 -0.0050 -0.1583 70.0000 62.3330 0.1445 -0.0323 TS403 86
87 TS248 66.4890 64.0070 -0.0305 0.0468 73.4040 69.5040 0.3143 0.3065 TS248 87
88 TS102 62.7660 62.0570 -0.2162 -0.0454 63.7250 63.7250 -0.1684 0.0334 TS102 88
89 TS304 62.7660 57.6240 -0.2162 -0.2548 62.7660 60.1310 -0.2162 -0.1364 TS304 89
90 TS245 62.7660 48.2270 -0.2162 -0.6988 62.7660 48.2270 -0.2162 -0.6988 TS245 90
91 TS037 62.2340 61.1700 -0.2427 -0.0873 96.2770 96.2770 1.4549 1.5714 TS037 91
92 TS213 60.7840 52.6140 -0.3150 -0.4915 94.1490 93.7940 1.3487 1.4541 TS213 92
93 TS103 59.5740 59.2200 -0.3753 -0.1794 71.2770 71.2770 0.2082 0.3902 TS103 93
94 TS353 58.5110 56.0280 -0.4284 -0.3302 59.5740 59.5740 -0.3753 -0.1627 TS353 94
95 TS018 56.9150 53.7230 -0.5079 -0.4391 63.8300 59.9290 -0.1631 -0.1459 TS018 95
96 TS009 55.3190 53.5460 -0.5875 -0.4475 55.3190 53.5460 -0.5875 -0.4475 TS009 96
97 TS355 54.7870 52.3050 -0.6141 -0.5061 54.7870 52.3050 -0.6141 -0.5061 TS355 97
98 TS029 54.4120 51.1440 -0.6327 -0.5610 73.5850 67.6100 0.3233 0.2170 TS029 98
99 TS450 54.2550 50.0000 -0.6406 -0.6150 54.2550 50.0000 -0.6406 -0.6150 TS450 99
100 TS166 53.7230 50.8870 -0.6671 -0.5731 80.0000 68.6670 0.6432 0.2669 TS166 100
101 TS088 53.4310 49.5100 -0.6817 -0.6382 53.4310 49.5100 -0.6817 -0.6382 TS088 101
102 TS408 52.4510 42.6470 -0.7305 -0.9624 69.6810 67.1990 0.1286 0.1976 TS408 102
103 TS186 52.1280 46.8090 -0.7466 -0.7658 52.1280 48.4040 -0.7466 -0.6904 TS186 103
104 TS207 51.5960 51.5960 -0.7732 -0.5396 51.5960 51.5960 -0.7732 -0.5396 TS207 104
105 TS028 51.5960 50.1770 -0.7732 -0.6066 64.8940 61.5250 -0.1101 -0.0705 TS028 105
106 TS302 51.5960 50.1770 -0.7732 -0.6066 56.3830 50.7090 -0.5345 -0.5815 TS302 106
107 TS142 51.5960 50.1770 -0.7732 -0.6066 56.3830 50.7090 -0.5345 -0.5815 TS142 107
108 TS214 51.0640 42.5530 -0.7997 -0.9668 52.1280 48.9360 -0.7466 -0.6653 TS214 108
109 TS220 50.5320 48.4040 -0.8262 -0.6904 51.0640 48.4040 -0.7997 -0.6904 TS220 109
110 TS447 50.5320 48.4040 -0.8262 -0.6904 51.0640 48.4040 -0.7997 -0.6904 TS447 110
111 TS350 47.8720 46.8090 -0.9589 -0.7658 47.8720 46.8090 -0.9589 -0.7658 TS350 111
112 TS382 46.8090 39.7160 -1.0119 -1.1009 58.0000 54.6670 -0.4538 -0.3945 TS382 112
113 TS206 46.2770 42.3760 -1.0384 -0.9752 46.2770 42.3760 -1.0384 -0.9752 TS206 113
114 TS244 45.2130 39.8940 -1.0915 -1.0925 95.7450 95.7450 1.4283 1.5462 TS244 114
115 TS391 44.6810 35.4610 -1.1180 -1.3019 44.6810 35.4610 -1.1180 -1.3019 TS391 115
116 TS020 44.1490 42.7300 -1.1445 -0.9585 56.9150 56.9150 -0.5079 -0.2883 TS020 116
117 TS200 43.6170 40.7800 -1.1710 -1.0506 56.3830 54.6100 -0.5345 -0.3972 TS200 117
118 TS461 43.6170 37.9430 -1.1710 -1.1846 68.6170 67.5530 0.0756 0.2143 TS461 118
119 TS153 43.1370 40.5230 -1.1950 -1.0627 43.1370 40.5230 -1.1950 -1.0627 TS153 119
120 TS336 43.0850 38.1210 -1.1976 -1.1762 43.0850 40.0000 -1.1976 -1.0875 TS336 120
121 TS055 41.6670 38.0720 -1.2683 -1.1785 41.6670 39.1670 -1.2683 -1.1268 TS055 121
122 TS042 41.0380 33.9620 -1.2996 -1.3727 60.6380 57.4470 -0.3223 -0.2632 TS042 122
123 TS373 40.9570 39.5390 -1.3037 -1.1092 51.5000 48.8330 -0.7780 -0.6701 TS373 123
124 TS117 40.9570 35.9930 -1.3037 -1.2768 94.1490 94.1490 1.3487 1.4708 TS117 124
125 TS250 40.5000 40.5000 -1.3265 -1.0638 40.5000 40.5000 -1.3265 -1.0638 TS250 125
126 TS311 40.4260 34.3970 -1.3302 -1.3522 40.4260 34.3970 -1.3302 -1.3522 TS311 126
127 TS316 39.3620 37.2340 -1.3832 -1.2181 40.4260 39.0070 -1.3302 -1.1344 TS316 127
128 TS026 39.2160 37.9080 -1.3905 -1.1863 39.3620 37.9080 -1.3832 -1.1863 TS026 128
129 TS328 38.8300 38.4750 -1.4097 -1.1595 38.8300 38.4750 -1.4097 -1.1595 TS328 129
130 TS291 38.2980 35.8160 -1.4363 -1.2851 40.4260 40.4260 -1.3302 -1.0673 TS291 130
131 TS170 38.2980 21.2770 -1.4363 -1.9720 94.6080 94.6080 1.3716 1.4925 TS170 131
132 TS047 37.7660 31.9150 -1.4628 -1.4694 37.7660 31.9150 -1.4628 -1.4694 TS047 132
133 TS484 36.1700 35.8160 -1.5424 -1.2851 36.7650 36.7650 -1.5127 -1.2403 TS484 133
134 TS075 36.1700 30.8510 -1.5424 -1.5197 40.4260 39.1840 -1.3302 -1.1260 TS075 134
135 TS444 36.1700 24.8230 -1.5424 -1.8045 42.0210 33.3330 -1.2506 -1.4024 TS444 135
136 TS264 35.6380 33.5110 -1.5689 -1.3940 46.2770 35.6380 -1.0384 -1.2935 TS264 136
137 TS084 35.6380 29.6100 -1.5689 -1.5783 40.9570 39.1840 -1.3037 -1.1260 TS084 137
138 TS257 33.5110 28.9010 -1.6750 -1.6118 38.8300 37.7660 -1.4097 -1.1930 TS257 138
139 TS345 32.9790 31.9150 -1.7015 -1.4694 34.5740 31.9150 -1.6220 -1.4694 TS345 139
140 AL396 32.0000 27.0000 -1.7503 -1.7016 74.4680 74.4680 0.3673 0.5410 AL396 140
141 TS424 31.3830 28.1910 -1.7811 -1.6454 60.6380 60.2840 -0.3223 -0.1291 TS424 141
142 TS289 27.1280 22.1630 -1.9933 -1.9302 27.1280 22.1630 -1.9933 -1.9302 TS289 142
143 TS014             0.0064 0.1159             0.0064 0.1159 TS014 143
144 TS035             0.0064 0.1159             0.0064 0.1159 TS035 144
145 TS039             0.0064 0.1159             0.0064 0.1159 TS039 145
146 TS044             0.0064 0.1159             0.0064 0.1159 TS044 146
147 TS060             0.0064 0.1159             0.0064 0.1159 TS060 147
148 TS061             0.0064 0.1159             0.0064 0.1159 TS061 148
149 TS074             0.0064 0.1159             0.0064 0.1159 TS074 149
150 TS086             0.0064 0.1159             0.0064 0.1159 TS086 150
151 TS105             0.0064 0.1159             0.0064 0.1159 TS105 151
152 TS140             0.0064 0.1159             0.0064 0.1159 TS140 152
153 TS150             0.0064 0.1159             0.0064 0.1159 TS150 153
154 TS152             0.0064 0.1159             0.0064 0.1159 TS152 154
155 TS154             0.0064 0.1159             0.0064 0.1159 TS154 155
156 TS178             0.0064 0.1159             0.0064 0.1159 TS178 156
157 TS180             0.0064 0.1159             0.0064 0.1159 TS180 157
158 TS184             0.0064 0.1159             0.0064 0.1159 TS184 158
159 TS189             0.0064 0.1159             0.0064 0.1159 TS189 159
160 TS199             0.0064 0.1159             0.0064 0.1159 TS199 160
161 TS228             0.0064 0.1159             0.0064 0.1159 TS228 161
162 TS254             0.0064 0.1159             0.0064 0.1159 TS254 162
163 TS261             0.0064 0.1159             0.0064 0.1159 TS261 163
164 TS263             0.0064 0.1159             0.0064 0.1159 TS263 164
165 TS269             0.0064 0.1159             0.0064 0.1159 TS269 165
166 TS279             0.0064 0.1159             0.0064 0.1159 TS279 166
167 TS322             0.0064 0.1159             0.0064 0.1159 TS322 167
168 TS324             0.0064 0.1159             0.0064 0.1159 TS324 168
169 TS330             0.0064 0.1159             0.0064 0.1159 TS330 169
170 TS331             0.0064 0.1159             0.0064 0.1159 TS331 170
171 TS347             0.0064 0.1159             0.0064 0.1159 TS347 171
172 TS358             0.0064 0.1159             0.0064 0.1159 TS358 172
173 TS362             0.0064 0.1159             0.0064 0.1159 TS362 173
174 TS365             0.0064 0.1159             0.0064 0.1159 TS365 174
175 TS423             0.0064 0.1159             0.0064 0.1159 TS423 175
176 TS433             0.0064 0.1159             0.0064 0.1159 TS433 176
177 TS436             0.0064 0.1159             0.0064 0.1159 TS436 177
178 TS439             0.0064 0.1159             0.0064 0.1159 TS439 178