T0567

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0567

NTPase domain of the Sigma-54 transport activator from E. coli

Target type: Server only

Target sequence:

>T0567 NTPase domain of the Sigma-54 transport activator, E. coli, 145 residues
VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: MCSG
PDB ID: 3n70

Jmol of T0567 structure : 3n70

PyMOL of T0567

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0567A146-2874-145
T0567B154-28512-143
T0567C150-2838-141
T0567D158-28016-138
T0567E148-2866-144
T0567F149-2857-143
T0567G154-28312-141
T0567H154-27512-133

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

This target is a AAA+ ATPase, sigma54 activator. P-loop containing nucleoside triphosphate hydrolases, Extended AAA-ATPase domain. (note this target does not have the family specific Arg-finger domain)

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

1ny5_A | PyMOL of 1ny5 A 138-311

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Sigma-54 interaction domain (PF00158).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0567 T0567 T0567 T0567
First score First Z-score Best score Best Z-score
1 TS321 85.2460 80.8740 1.3477 1.7955 85.2460 80.8740 1.3477 1.7955 TS321 1
2 TS452 81.5570 72.8140 0.8755 0.8425 81.5570 73.2240 0.8755 0.8910 TS452 2
3 TS104 81.3520 74.3850 0.8493 1.0283 81.3520 74.3850 0.8493 1.0283 TS104 3
4 TS407 80.3280 71.7210 0.7182 0.7133 80.5330 73.7020 0.7445 0.9475 TS407 4
5 TS236 80.1230 73.5660 0.6920 0.9315 80.1230 73.9070 0.6920 0.9718 TS236 5
6 TS063 79.9180 74.0440 0.6658 0.9880 79.9180 74.4540 0.6658 1.0364 TS063 6
7 TS428 79.9180 73.7700 0.6658 0.9556 79.9180 73.7700 0.6658 0.9556 TS428 7
8 TS490 79.9180 73.3610 0.6658 0.9072 79.9180 73.3610 0.6658 0.9072 TS490 8
9 TS037 79.9180 73.0870 0.6658 0.8748 79.9180 74.5900 0.6658 1.0525 TS037 9
10 TS119 79.9180 71.7210 0.6658 0.7133 80.5330 73.7020 0.7445 0.9475 TS119 10
11 TS114 79.7130 73.4290 0.6395 0.9153 79.9180 73.7700 0.6658 0.9556 TS114 11
12 TS361 79.5080 73.2240 0.6133 0.8910 79.9180 73.2240 0.6658 0.8910 TS361 12
13 TS380 79.5080 72.5410 0.6133 0.8103 79.5080 72.5410 0.6133 0.8103 TS380 13
14 TS094 79.5080 72.4040 0.6133 0.7941 80.5330 73.7020 0.7445 0.9475 TS094 14
15 TS470 79.5080 71.0380 0.6133 0.6326 81.5570 72.8140 0.8755 0.8425 TS470 15
16 TS296 79.3030 70.6970 0.5870 0.5922 79.3030 70.6970 0.5870 0.5922 TS296 16
17 TS291 78.8930 71.3800 0.5346 0.6730 78.8930 71.3800 0.5346 0.6730 TS291 17
18 TS276 78.8930 71.1070 0.5346 0.6407 78.8930 71.1070 0.5346 0.6407 TS276 18
19 TS077 78.8930 71.1070 0.5346 0.6407 78.8930 71.1070 0.5346 0.6407 TS077 19
20 TS286 78.8930 71.1070 0.5346 0.6407 78.8930 71.1070 0.5346 0.6407 TS286 20
21 TS429 78.8930 70.0140 0.5346 0.5115 78.8930 70.4920 0.5346 0.5680 TS429 21
22 TS207 78.8930 69.4670 0.5346 0.4468 78.8930 69.4670 0.5346 0.4468 TS207 22
23 TS088 78.8930 68.6480 0.5346 0.3500 78.8930 69.1940 0.5346 0.4145 TS088 23
24 TS102 78.8790 69.3970 0.5328 0.4385 79.7130 71.5160 0.6395 0.6891 TS102 24
25 TS419 78.8790 66.9540 0.5328 0.1497 78.8930 66.9540 0.5346 0.1497 TS419 25
26 TS166 78.8790 66.9540 0.5328 0.1497 78.8930 66.9540 0.5346 0.1497 TS166 26
27 TS103 78.6890 71.4480 0.5085 0.6810 78.6890 71.4480 0.5085 0.6810 TS103 27
28 TS314 78.6640 73.6350 0.5053 0.9396 78.6640 73.6350 0.5053 0.9396 TS314 28
29 TS215 78.4840 71.2430 0.4822 0.6568 79.0980 71.3110 0.5608 0.6648 TS215 29
30 TS080 78.4840 71.2430 0.4822 0.6568 78.8930 71.6530 0.5346 0.7053 TS080 30
31 TS002 78.4840 71.2430 0.4822 0.6568 81.1480 75.2730 0.8232 1.1333 TS002 31
32 TS028 78.4840 70.2870 0.4822 0.5438 78.8930 70.2870 0.5346 0.5438 TS028 32
33 TS214 78.4840 69.6040 0.4822 0.4630 78.4840 69.6120 0.4822 0.4640 TS214 33
34 TS026 78.4480 71.9830 0.4776 0.7443 79.0980 71.9830 0.5608 0.7443 TS026 34
35 TS481 78.2790 69.3990 0.4560 0.4388 79.3030 71.9950 0.5870 0.7457 TS481 35
36 TS345 78.2790 64.8910 0.4560 -0.0942 79.0980 70.4920 0.5608 0.5680 TS345 36
37 AL285 78.2330 70.9050 0.4501 0.6168 78.2330 70.9050 0.4501 0.6168 AL285 37
38 TS165 78.0740 69.3310 0.4298 0.4307 78.4840 69.8770 0.4822 0.4953 TS165 38
39 TS457 77.8690 72.6780 0.4035 0.8265 77.8690 72.6780 0.4035 0.8265 TS457 39
40 TS304 77.8690 70.0820 0.4035 0.5195 77.8690 70.0820 0.4035 0.5195 TS304 40
41 TS018 77.8690 68.9890 0.4035 0.3903 80.5330 72.8830 0.7445 0.8507 TS018 41
42 TS113 77.8020 67.0260 0.3949 0.1582 79.3030 74.2490 0.5870 1.0122 TS113 42
43 TS208 77.4590 70.3550 0.3510 0.5518 77.8690 70.3550 0.4035 0.5518 TS208 43
44 TS275 77.4590 69.2620 0.3510 0.4226 78.0740 71.3110 0.4298 0.6648 TS275 44
45 TS001 77.4590 69.2620 0.3510 0.4226 78.0170 69.6840 0.4225 0.4725 TS001 45
46 TS173 77.3710 71.3360 0.3398 0.6678 78.2330 71.3360 0.4501 0.6678 TS173 46
47 TS366 77.1550 70.1150 0.3121 0.5234 79.9180 74.4540 0.6658 1.0364 TS366 47
48 TS449 77.0490 68.7160 0.2986 0.3580 77.0490 68.7160 0.2986 0.3580 TS449 48
49 TS453 77.0490 68.7160 0.2986 0.3580 77.0490 68.7160 0.2986 0.3580 TS453 49
50 TS346 77.0490 68.7160 0.2986 0.3580 77.0490 68.7160 0.2986 0.3580 TS346 50
51 AL396 76.9400 70.4740 0.2846 0.5659 76.9400 70.4740 0.2846 0.5659 AL396 51
52 TS250 76.9400 70.4740 0.2846 0.5659 78.4480 71.1210 0.4776 0.6424 TS250 52
53 TS213 76.9400 69.3250 0.2846 0.4300 77.5860 70.1150 0.3673 0.5234 TS213 53
54 TS244 76.8440 66.7350 0.2723 0.1238 78.2330 70.9050 0.4501 0.6168 TS244 54
55 TS127 76.2300 65.1640 0.1937 -0.0619 78.4840 70.1150 0.4822 0.5234 TS127 55
56 TS035 76.0250 68.1010 0.1675 0.2853 76.0250 68.1010 0.1675 0.2853 TS035 56
57 TS218 76.0250 65.7790 0.1675 0.0108 76.0250 65.7790 0.1675 0.0108 TS218 57
58 TS302 76.0250 65.6420 0.1675 -0.0054 76.0250 65.6420 0.1675 -0.0054 TS302 58
59 TS142 76.0250 65.6420 0.1675 -0.0054 76.0250 65.6420 0.1675 -0.0054 TS142 59
60 TS220 76.0250 65.6420 0.1675 -0.0054 76.0250 65.6420 0.1675 -0.0054 TS220 60
61 TS447 76.0250 65.6420 0.1675 -0.0054 76.0250 65.6420 0.1675 -0.0054 TS447 61
62 TS395 75.8200 67.4860 0.1413 0.2126 82.1120 75.9340 0.9466 1.2114 TS395 62
63 TS476 75.8200 65.9840 0.1413 0.0350 79.0980 70.6280 0.5608 0.5841 TS476 63
64 TS420 75.8200 65.9840 0.1413 0.0350 79.0980 70.6280 0.5608 0.5841 TS420 64
65 TS471 75.8200 65.9840 0.1413 0.0350 79.0980 70.6280 0.5608 0.5841 TS471 65
66 TS391 75.6470 70.0430 0.1191 0.5149 75.6470 70.0430 0.1191 0.5149 TS391 66
67 TS228 75.5860 65.0390 0.1113 -0.0767 77.6640 69.8770 0.3773 0.4953 TS228 67
68 TS307 75.4100 68.0330 0.0888 0.2773 76.9400 69.1090 0.2846 0.4045 TS307 68
69 TS129 75.2050 68.3740 0.0626 0.3176 77.2540 69.1260 0.3248 0.4065 TS129 69
70 TS117 75.2050 64.4130 0.0626 -0.1507 75.2050 65.4370 0.0626 -0.0297 TS117 70
71 TS319 74.7950 67.9640 0.0101 0.2691 79.3030 70.6970 0.5870 0.5922 TS319 71
72 TS273 74.7950 67.9640 0.0101 0.2691 77.5860 70.6900 0.3673 0.5914 TS273 72
73 TS435 74.7950 63.5930 0.0101 -0.2477 79.0980 67.6230 0.5608 0.2288 TS435 73
74 TS409 74.7950 61.9540 0.0101 -0.4415 78.2790 69.9450 0.4560 0.5033 TS409 74
75 TS253 74.5900 66.3930 -0.0162 0.0834 76.5090 66.9540 0.2294 0.1497 TS253 75
76 TS055 74.5900 62.1580 -0.0162 -0.4174 78.1250 67.9690 0.4363 0.2697 TS055 76
77 TS328 74.3850 63.4560 -0.0424 -0.2639 74.3850 63.4560 -0.0424 -0.2639 TS328 77
78 TS174 74.3530 62.7160 -0.0465 -0.3514 74.3530 62.7160 -0.0465 -0.3514 TS174 78
79 TS056 74.1800 65.3010 -0.0686 -0.0458 75.6150 68.6480 0.1150 0.3500 TS056 79
80 TS047 73.7700 65.1640 -0.1211 -0.0619 73.7700 65.1640 -0.1211 -0.0619 TS047 80
81 TS436 55.1230 45.6280 -2.5077 -2.3718 76.9400 67.9640 0.2846 0.2691 TS436 81
82 TS248 51.0250 42.8280 -3.0322 -2.7028 51.0250 42.8280 -3.0322 -2.7028 TS248 82
83 TS171 49.3850 41.7350 -3.2421 -2.8321 49.3850 41.7350 -3.2421 -2.8321 TS171 83
84 TS355 31.7130 26.0030 -5.5039 -4.6921 31.7130 26.0030 -5.5039 -4.6921 TS355 84
85 TS350 26.7240 23.2760 -6.1425 -5.0146 31.8970 24.6410 -5.4804 -4.8532 TS350 85
86 TS014 26.6670 22.3810 -6.1497 -5.1204 26.6670 22.3810 -6.1497 -5.1204 TS014 86
87 TS257 22.4140 20.9770 -6.6941 -5.2864 27.6190 24.2820 -6.0279 -4.8956 TS257 87
88 TS264 18.9810 17.4380 -7.1335 -5.7048 19.7620 18.1750 -7.0335 -5.6177 TS264 88
89 RANDOM 18.64 15.28 -7.1771 -5.9600 18.64 15.28 -7.1771 -5.9600 RANDOM 89
90 TS444 18.0950 16.6670 -7.2469 -5.7960 18.6130 16.6670 -7.1806 -5.7960 TS444 90
91 TS229 17.6190 15.3170 -7.3078 -5.9556 21.5520 20.1150 -6.8044 -5.3883 TS229 91
92 TS289 16.6670 13.8100 -7.4296 -6.1338 16.6670 13.8100 -7.4296 -6.1338 TS289 92
93 TS009             -7.1771 -5.9600             -7.1771 -5.9600 TS009 93
94 TS016             -7.1771 -5.9600             -7.1771 -5.9600 TS016 94
95 TS020             -7.1771 -5.9600             -7.1771 -5.9600 TS020 95
96 TS029             -7.1771 -5.9600             -7.1771 -5.9600 TS029 96
97 TS033             -7.1771 -5.9600             -7.1771 -5.9600 TS033 97
98 TS039             -7.1771 -5.9600             -7.1771 -5.9600 TS039 98
99 TS042             -7.1771 -5.9600             -7.1771 -5.9600 TS042 99
100 TS044             -7.1771 -5.9600             -7.1771 -5.9600 TS044 100
101 TS045             -7.1771 -5.9600             -7.1771 -5.9600 TS045 101
102 TS060             -7.1771 -5.9600             -7.1771 -5.9600 TS060 102
103 TS061             -7.1771 -5.9600             -7.1771 -5.9600 TS061 103
104 TS074             -7.1771 -5.9600             -7.1771 -5.9600 TS074 104
105 TS075             -7.1771 -5.9600             -7.1771 -5.9600 TS075 105
106 TS083             -7.1771 -5.9600             -7.1771 -5.9600 TS083 106
107 TS084             -7.1771 -5.9600             -7.1771 -5.9600 TS084 107
108 TS086             -7.1771 -5.9600             -7.1771 -5.9600 TS086 108
109 TS096             -7.1771 -5.9600             -7.1771 -5.9600 TS096 109
110 TS105             -7.1771 -5.9600             -7.1771 -5.9600 TS105 110
111 TS110             -7.1771 -5.9600             -7.1771 -5.9600 TS110 111
112 TS140             -7.1771 -5.9600             -7.1771 -5.9600 TS140 112
113 TS147             -7.1771 -5.9600             -7.1771 -5.9600 TS147 113
114 TS149             -7.1771 -5.9600             -7.1771 -5.9600 TS149 114
115 TS150             -7.1771 -5.9600             -7.1771 -5.9600 TS150 115
116 TS152             -7.1771 -5.9600             -7.1771 -5.9600 TS152 116
117 TS153             -7.1771 -5.9600             -7.1771 -5.9600 TS153 117
118 TS154             -7.1771 -5.9600             -7.1771 -5.9600 TS154 118
119 TS160             -7.1771 -5.9600             -7.1771 -5.9600 TS160 119
120 TS170             -7.1771 -5.9600             -7.1771 -5.9600 TS170 120
121 TS172             -7.1771 -5.9600             -7.1771 -5.9600 TS172 121
122 TS178             -7.1771 -5.9600             -7.1771 -5.9600 TS178 122
123 TS180             -7.1771 -5.9600             -7.1771 -5.9600 TS180 123
124 TS182             -7.1771 -5.9600             -7.1771 -5.9600 TS182 124
125 TS184             -7.1771 -5.9600             -7.1771 -5.9600 TS184 125
126 TS186             -7.1771 -5.9600             -7.1771 -5.9600 TS186 126
127 TS189             -7.1771 -5.9600             -7.1771 -5.9600 TS189 127
128 TS192             -7.1771 -5.9600             -7.1771 -5.9600 TS192 128
129 TS199             -7.1771 -5.9600             -7.1771 -5.9600 TS199 129
130 TS200             -7.1771 -5.9600             -7.1771 -5.9600 TS200 130
131 TS206             -7.1771 -5.9600             -7.1771 -5.9600 TS206 131
132 TS240             -7.1771 -5.9600             -7.1771 -5.9600 TS240 132
133 TS242             -7.1771 -5.9600             -7.1771 -5.9600 TS242 133
134 TS245             -7.1771 -5.9600             -7.1771 -5.9600 TS245 134
135 TS254             -7.1771 -5.9600             -7.1771 -5.9600 TS254 135
136 TS261             -7.1771 -5.9600             -7.1771 -5.9600 TS261 136
137 TS263             -7.1771 -5.9600             -7.1771 -5.9600 TS263 137
138 TS269             -7.1771 -5.9600             -7.1771 -5.9600 TS269 138
139 TS278             -7.1771 -5.9600             -7.1771 -5.9600 TS278 139
140 TS279             -7.1771 -5.9600             -7.1771 -5.9600 TS279 140
141 TS282             -7.1771 -5.9600             -7.1771 -5.9600 TS282 141
142 TS295             -7.1771 -5.9600             -7.1771 -5.9600 TS295 142
143 TS297             -7.1771 -5.9600             -7.1771 -5.9600 TS297 143
144 TS299             -7.1771 -5.9600             -7.1771 -5.9600 TS299 144
145 TS300             -7.1771 -5.9600             -7.1771 -5.9600 TS300 145
146 TS301             -7.1771 -5.9600             -7.1771 -5.9600 TS301 146
147 TS311             -7.1771 -5.9600             -7.1771 -5.9600 TS311 147
148 TS316             -7.1771 -5.9600             -7.1771 -5.9600 TS316 148
149 TS322             -7.1771 -5.9600             -7.1771 -5.9600 TS322 149
150 TS324             -7.1771 -5.9600             -7.1771 -5.9600 TS324 150
151 TS330             -7.1771 -5.9600             -7.1771 -5.9600 TS330 151
152 TS331             -7.1771 -5.9600             -7.1771 -5.9600 TS331 152
153 TS333             -7.1771 -5.9600             -7.1771 -5.9600 TS333 153
154 TS336             -7.1771 -5.9600             -7.1771 -5.9600 TS336 154
155 TS347             -7.1771 -5.9600             -7.1771 -5.9600 TS347 155
156 TS353             -7.1771 -5.9600             -7.1771 -5.9600 TS353 156
157 TS358             -7.1771 -5.9600             -7.1771 -5.9600 TS358 157
158 TS360             -7.1771 -5.9600             -7.1771 -5.9600 TS360 158
159 TS362             -7.1771 -5.9600             -7.1771 -5.9600 TS362 159
160 TS365             -7.1771 -5.9600             -7.1771 -5.9600 TS365 160
161 TS373             -7.1771 -5.9600             -7.1771 -5.9600 TS373 161
162 TS382             -7.1771 -5.9600             -7.1771 -5.9600 TS382 162
163 TS386             -7.1771 -5.9600             -7.1771 -5.9600 TS386 163
164 TS399             -7.1771 -5.9600             -7.1771 -5.9600 TS399 164
165 TS400             -7.1771 -5.9600             -7.1771 -5.9600 TS400 165
166 TS402             -7.1771 -5.9600             -7.1771 -5.9600 TS402 166
167 TS403             -7.1771 -5.9600             -7.1771 -5.9600 TS403 167
168 TS408             -7.1771 -5.9600             -7.1771 -5.9600 TS408 168
169 TS418             -7.1771 -5.9600             -7.1771 -5.9600 TS418 169
170 TS423             -7.1771 -5.9600             -7.1771 -5.9600 TS423 170
171 TS424             -7.1771 -5.9600             -7.1771 -5.9600 TS424 171
172 TS433             -7.1771 -5.9600             -7.1771 -5.9600 TS433 172
173 TS439             -7.1771 -5.9600             -7.1771 -5.9600 TS439 173
174 TS450             -7.1771 -5.9600             -7.1771 -5.9600 TS450 174
175 TS458             -7.1771 -5.9600             -7.1771 -5.9600 TS458 175
176 TS461             -7.1771 -5.9600             -7.1771 -5.9600 TS461 176
177 TS477             -7.1771 -5.9600             -7.1771 -5.9600 TS477 177
178 TS484             -7.1771 -5.9600             -7.1771 -5.9600 TS484 178