T0561

Targets
515 516 517 518
519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
591 592 593 594
595 596 597 598
599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
615 616 617 618
619 620 621 622
623 624 625 626
627 628 629 630
631 632 633 634
635 636 637 638
639 640 641 642
643      

T0561

JBP1 from Leishmania Tarentolae

Target type: Human/Server

Target sequence:

>T0561 JBP1, Leishmania Tarentolae, 161 residues
VEKKKYLDSEFLLHCISAQLLDMWKQARARWLELVGKEWAHMLALNPERKDFLWKNQSEMNSAFFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSAACAEELHMEVAMSLRKLNVKLKDFNFGGTRYFKDMPPEEKKRRMERKQRIEEARRHGMP

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: Non-SGI research Centers and others
PDB ID:
(not yet released)

Jmol of T0561 structure

PyMOL of T0561

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0561A399-5611-161

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

4 helical bundle with a small beta-hairpin inserted between 3 and 4 helix.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: FM  alignment.

Closest templates:

Template manually selected by shuoyong:

No good template found for now, needs more study

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

no significant Pfam hit.

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0561 T0561 T0561 T0561
First score First Z-score Best score Best Z-score
1 TS055 39.3790 34.3680 2.4945 2.8394 39.3790 34.3680 2.4945 2.8394 TS055 1
2 TS324 39.3790 34.0410 2.4945 2.7783 39.3790 34.9130 2.4945 2.9413 TS324 2
3 TS316 35.1310 22.6580 1.8488 0.6503 35.1310 25.7080 1.8488 1.2205 TS316 3
4 TS042 33.9870 28.6490 1.6749 1.7703 33.9870 28.6490 1.6749 1.7703 TS042 4
5 TS035 33.4970 29.4660 1.6005 1.9230 33.4970 29.4660 1.6005 1.9230 TS035 5
6 TS407 33.4970 29.4660 1.6005 1.9230 33.4970 29.4660 1.6005 1.9230 TS407 6
7 TS428 33.4970 29.4660 1.6005 1.9230 33.4970 29.4660 1.6005 1.9230 TS428 7
8 TS192 33.4970 29.4660 1.6005 1.9230 33.4970 29.4660 1.6005 1.9230 TS192 8
9 TS297 33.3330 28.6490 1.5755 1.7703 33.3330 28.6490 1.5755 1.7703 TS297 9
10 TS402 33.3330 22.6580 1.5755 0.6503 34.9670 29.7390 1.8239 1.9741 TS402 10
11 TS016 33.1700 28.1590 1.5508 1.6787 33.6600 28.6490 1.6252 1.7703 TS016 11
12 TS490 33.0070 28.1050 1.5260 1.6686 33.0070 28.1050 1.5260 1.6686 TS490 12
13 TS395 32.6800 15.3590 1.4763 -0.7142 32.6800 27.5050 1.4763 1.5564 TS395 13
14 TS295 32.3530 29.7390 1.4266 1.9741 32.3530 29.7390 1.4266 1.9741 TS295 14
15 TS033 32.3530 26.5800 1.4266 1.3835 32.3530 26.5800 1.4266 1.3835 TS033 15
16 TS424 32.3530 19.0090 1.4266 -0.0318 32.3530 24.6730 1.4266 1.0270 TS424 16
17 TS037 32.1900 26.1980 1.4018 1.3121 33.3330 28.4310 1.5755 1.7295 TS037 17
18 TS380 32.1900 26.0890 1.4018 1.2917 32.1900 26.0890 1.4018 1.2917 TS380 18
19 TS113 32.0260 26.1440 1.3769 1.3020 32.0260 26.1440 1.3769 1.3020 TS113 19
20 TS400 31.8630 25.6540 1.3521 1.2104 33.0070 29.9560 1.5260 2.0146 TS400 20
21 TS075 31.3730 25.0000 1.2776 1.0881 34.6410 29.4120 1.7744 1.9129 TS075 21
22 TS083 31.3730 24.7280 1.2776 1.0373 31.3730 24.7280 1.2776 1.0373 TS083 22
23 TS399 31.2090 26.8520 1.2527 1.4343 34.4770 30.5010 1.7494 2.1165 TS399 23
24 TS365 31.2090 26.0890 1.2527 1.2917 33.3330 28.5950 1.5755 1.7602 TS365 24
25 TS457 31.2090 25.4360 1.2527 1.1696 36.7650 30.1200 2.0972 2.0453 TS457 25
26 TS321 31.2090 22.3860 1.2527 0.5995 31.2090 22.7120 1.2527 0.6604 TS321 26
27 TS419 31.2090 22.3860 1.2527 0.5995 33.4970 29.4660 1.6005 1.9230 TS419 27
28 TS110 31.2090 22.3860 1.2527 0.5995 33.4970 29.4660 1.6005 1.9230 TS110 28
29 TS199 31.2090 22.3860 1.2527 0.5995 31.2090 22.3860 1.2527 0.5995 TS199 29
30 TS094 31.0460 25.5990 1.2279 1.2001 33.4970 29.4660 1.6005 1.9230 TS094 30
31 TS470 31.0460 20.5340 1.2279 0.2532 32.1900 26.0890 1.4018 1.2917 TS470 31
32 TS061 30.8820 25.5450 1.2030 1.1900 31.2090 25.5450 1.2527 1.1900 TS061 32
33 TS361 30.5560 21.3510 1.1534 0.4060 33.1700 25.8710 1.5508 1.2510 TS361 33
34 TS423 30.3920 27.7780 1.1285 1.6075 31.3730 28.6490 1.2776 1.7703 TS423 34
35 TS047 30.2290 26.8520 1.1037 1.4343 30.2290 26.8520 1.1037 1.4343 TS047 35
36 TS060 29.7390 25.4900 1.0292 1.1797 33.4970 29.4660 1.6005 1.9230 TS060 36
37 TS096 29.7390 24.9460 1.0292 1.0780 32.8430 26.9610 1.5011 1.4547 TS096 37
38 TS172 29.7390 23.3120 1.0292 0.7726 32.8430 27.4510 1.5011 1.5463 TS172 38
39 TS088 29.5750 25.3810 1.0043 1.1594 38.5620 32.3530 2.3704 2.4627 TS088 39
40 TS236 29.0850 26.1440 0.9298 1.3020 29.2480 26.6340 0.9546 1.3936 TS236 40
41 TS481 28.9220 17.3750 0.9050 -0.3373 28.9220 24.4010 0.9050 0.9761 TS481 41
42 TS153 28.4310 26.0350 0.8304 1.2816 28.4310 26.0350 0.8304 1.2816 TS153 42
43 TS102 28.2680 25.5450 0.8056 1.1900 28.2680 25.5450 0.8056 1.1900 TS102 43
44 TS366 28.2680 22.3860 0.8056 0.5995 28.2680 22.3860 0.8056 0.5995 TS366 44
45 TS353 28.1050 24.2370 0.7809 0.9455 28.9220 24.2370 0.9050 0.9455 TS353 45
46 TS244 28.1050 20.8060 0.7809 0.3041 28.1050 20.8060 0.7809 0.3041 TS244 46
47 TS300 27.9410 24.2370 0.7559 0.9455 34.6410 29.4120 1.7744 1.9129 TS300 47
48 TS104 27.9410 23.0390 0.7559 0.7215 35.1310 30.3380 1.8488 2.0860 TS104 48
49 TS002 27.2880 15.7410 0.6567 -0.6428 28.9220 22.4400 0.9050 0.6096 TS002 49
50 TS386 27.1240 22.0040 0.6317 0.5280 32.0260 24.0740 1.3769 0.9150 TS386 50
51 TS418 26.6340 24.2370 0.5573 0.9455 35.1310 30.7730 1.8488 2.1673 TS418 51
52 TS103 26.4710 22.9850 0.5325 0.7114 26.4710 22.9850 0.5325 0.7114 TS103 52
53 TS182 26.4710 21.5690 0.5325 0.4467 27.4510 24.5100 0.6814 0.9965 TS182 53
54 TS452 25.9800 24.3460 0.4579 0.9659 26.3070 24.6730 0.5076 1.0270 TS452 54
55 TS127 25.8170 24.6190 0.4331 1.0169 25.8170 24.6190 0.4331 1.0169 TS127 55
56 TS382 25.8170 23.9650 0.4331 0.8946 30.8820 23.9650 1.2030 0.8946 TS382 56
57 TS408 25.8170 20.8060 0.4331 0.3041 30.8820 24.4550 1.2030 0.9862 TS408 57
58 TS026 25.8170 17.5380 0.4331 -0.3068 25.8170 19.0630 0.4331 -0.0218 TS026 58
59 TS450 25.6540 22.7120 0.4083 0.6604 25.6540 22.7120 0.4083 0.6604 TS450 59
60 TS299 25.6540 21.7320 0.4083 0.4772 33.0070 23.4200 1.5260 0.7928 TS299 60
61 TS240 25.4900 20.6430 0.3834 0.2736 25.4900 20.6430 0.3834 0.2736 TS240 61
62 TS276 25.1630 20.0440 0.3337 0.1616 25.1630 20.0440 0.3337 0.1616 TS276 62
63 TS286 25.1630 20.0440 0.3337 0.1616 25.1630 20.0440 0.3337 0.1616 TS286 63
64 TS253 24.8370 21.4050 0.2841 0.4161 25.9800 23.5840 0.4579 0.8234 TS253 64
65 TS458 24.6730 21.7320 0.2592 0.4772 28.2680 25.5450 0.8056 1.1900 TS458 65
66 TS063 24.6730 19.6620 0.2592 0.0902 26.9610 19.6620 0.6070 0.0902 TS063 66
67 TS291 24.5100 23.0390 0.2344 0.7215 35.7840 28.7040 1.9481 1.7806 TS291 67
68 TS186 24.5100 21.6780 0.2344 0.4671 24.5100 21.6780 0.2344 0.4671 TS186 68
69 TS077 24.3460 21.1870 0.2095 0.3753 24.3460 21.1870 0.2095 0.3753 TS077 69
70 TS114 24.1830 19.4990 0.1847 0.0598 33.1700 25.8710 1.5508 1.2510 TS114 70
71 TS170 23.6930 21.9500 0.1102 0.5180 29.9020 27.9410 1.0540 1.6379 TS170 71
72 TS429 23.6930 21.0240 0.1102 0.3448 25.9800 24.3460 0.4579 0.9659 TS429 72
73 TS477 23.5290 18.9540 0.0853 -0.0421 27.1240 20.0440 0.6317 0.1616 TS477 73
74 TS307 23.3660 21.5140 0.0605 0.4364 23.3660 21.5140 0.0605 0.4364 TS307 74
75 TS447 23.3660 18.7360 0.0605 -0.0829 23.3660 18.7360 0.0605 -0.0829 TS447 75
76 TS409 23.3660 17.8100 0.0605 -0.2560 23.3660 17.8100 0.0605 -0.2560 TS409 76
77 TS350 23.2030 21.2420 0.0357 0.3856 23.6930 22.0590 0.1102 0.5383 TS350 77
78 TS214 22.7120 18.7910 -0.0389 -0.0726 24.5100 21.5690 0.2344 0.4467 TS214 78
79 TS084 22.5490 19.9350 -0.0637 0.1413 25.4900 21.5140 0.3834 0.4364 TS084 79
80 TS360 22.2220 21.0780 -0.1134 0.3549 22.2220 21.0780 -0.1134 0.3549 TS360 80
81 TS242 22.0590 21.7320 -0.1382 0.4772 28.9220 27.7230 0.9050 1.5972 TS242 81
82 TS484 22.0590 19.6080 -0.1382 0.0801 31.2090 26.5250 1.2527 1.3732 TS484 82
83 TS449 21.7320 18.7910 -0.1879 -0.0726 21.7320 18.7910 -0.1879 -0.0726 TS449 83
84 TS453 21.7320 18.7910 -0.1879 -0.0726 21.7320 18.7910 -0.1879 -0.0726 TS453 84
85 TS346 21.7320 18.7910 -0.1879 -0.0726 21.7320 18.7910 -0.1879 -0.0726 TS346 85
86 TS436 21.7320 15.4680 -0.1879 -0.6938 22.0590 15.8500 -0.1382 -0.6224 TS436 86
87 TS215 20.9150 17.6470 -0.3120 -0.2865 22.3860 17.6470 -0.0885 -0.2865 TS215 87
88 TS080 20.9150 17.6470 -0.3120 -0.2865 24.0200 21.0780 0.1599 0.3549 TS080 88
89 TS119 20.9150 17.6470 -0.3120 -0.2865 20.9150 17.6470 -0.3120 -0.2865 TS119 89
90 TS166 20.5880 18.5190 -0.3618 -0.1235 25.8170 22.1680 0.4331 0.5587 TS166 90
91 TS174 20.4250 18.1920 -0.3865 -0.1846 22.8760 20.4250 -0.0140 0.2329 TS174 91
92 TS200 20.2610 19.3900 -0.4115 0.0394 28.2680 22.7670 0.8056 0.6707 TS200 92
93 TS435 20.0980 18.7910 -0.4362 -0.0726 20.0980 18.7910 -0.4362 -0.0726 TS435 93
94 TS245 20.0980 15.3050 -0.4362 -0.7243 20.0980 15.3050 -0.4362 -0.7243 TS245 94
95 TS461 19.9350 17.8650 -0.4610 -0.2457 20.2610 17.9740 -0.4115 -0.2253 TS461 95
96 RANDOM 19.91 17.62 -0.4648 -0.2915 19.91 17.62 -0.4648 -0.2915 RANDOM 96
97 TS147 19.4440 15.5230 -0.5356 -0.6835 30.7190 26.0350 1.1782 1.2816 TS147 97
98 TS373 19.2810 17.5380 -0.5604 -0.3068 21.7320 18.6820 -0.1879 -0.0930 TS373 98
99 TS355 19.2810 17.3200 -0.5604 -0.3476 26.1440 19.8800 0.4828 0.1310 TS355 99
100 TS229 19.1180 17.3200 -0.5852 -0.3476 19.1180 17.3200 -0.5852 -0.3476 TS229 100
101 TS302 18.7910 17.9740 -0.6349 -0.2253 24.0200 17.9740 0.1599 -0.2253 TS302 101
102 TS142 18.7910 17.9740 -0.6349 -0.2253 24.0200 17.9740 0.1599 -0.2253 TS142 102
103 TS220 18.7910 17.9740 -0.6349 -0.2253 26.7970 23.0390 0.5820 0.7215 TS220 103
104 TS314 18.3010 17.1020 -0.7094 -0.3884 23.5290 22.4400 0.0853 0.6096 TS314 104
105 TS333 18.3010 14.5420 -0.7094 -0.8669 18.3010 14.5420 -0.7094 -0.8669 TS333 105
106 TS319 18.1370 16.7210 -0.7343 -0.4596 18.1370 16.7210 -0.7343 -0.4596 TS319 106
107 TS056 18.1370 16.7210 -0.7343 -0.4596 18.3010 16.7210 -0.7094 -0.4596 TS056 107
108 TS273 18.1370 16.7210 -0.7343 -0.4596 18.1370 16.7210 -0.7343 -0.4596 TS273 108
109 TS001 18.1370 16.7210 -0.7343 -0.4596 18.1370 16.7210 -0.7343 -0.4596 TS001 109
110 TS328 18.1370 15.9590 -0.7343 -0.6020 18.1370 15.9590 -0.7343 -0.6020 TS328 110
111 TS279 17.9740 14.3790 -0.7591 -0.8974 17.9740 14.3790 -0.7591 -0.8974 TS279 111
112 TS218 17.8100 16.5030 -0.7840 -0.5003 17.9740 16.7210 -0.7591 -0.4596 TS218 112
113 TS304 17.6470 15.1420 -0.8088 -0.7548 19.1180 18.2460 -0.5852 -0.1745 TS304 113
114 TS173 17.6470 14.8150 -0.8088 -0.8159 17.6470 14.8150 -0.8088 -0.8159 TS173 114
115 TS264 17.1570 16.6670 -0.8833 -0.4697 18.6270 16.6670 -0.6598 -0.4697 TS264 115
116 TS213 17.1570 16.1760 -0.8833 -0.5615 23.3660 20.8610 0.0605 0.3144 TS213 116
117 TS391 16.9930 12.5270 -0.9082 -1.2436 16.9930 12.5270 -0.9082 -1.2436 TS391 117
118 TS028 16.6670 16.4490 -0.9578 -0.5104 18.4640 16.6120 -0.6846 -0.4800 TS028 118
119 TS045 16.6670 16.3400 -0.9578 -0.5308 19.7710 16.9390 -0.4859 -0.4188 TS045 119
120 TS029 16.6670 15.0330 -0.9578 -0.7751 16.6670 15.0330 -0.9578 -0.7751 TS029 120
121 TS129 16.5030 11.2750 -0.9827 -1.4777 16.8300 16.1760 -0.9330 -0.5615 TS129 121
122 TS208 16.3400 14.8690 -1.0075 -0.8058 16.3400 14.8690 -1.0075 -0.8058 TS208 122
123 TS248 16.1760 12.5270 -1.0324 -1.2436 16.3400 12.6910 -1.0075 -1.2130 TS248 123
124 TS476 16.0130 11.6560 -1.0572 -1.4064 17.1570 12.9630 -0.8833 -1.1621 TS476 124
125 TS275 15.8500 15.2510 -1.0819 -0.7344 17.3200 16.7210 -0.8585 -0.4596 TS275 125
126 TS165 15.6860 15.6860 -1.1069 -0.6531 20.7520 18.0830 -0.3368 -0.2050 TS165 126
127 TS289 15.6860 15.5770 -1.1069 -0.6734 15.6860 15.5770 -1.1069 -0.6734 TS289 127
128 TS117 15.5230 15.5230 -1.1317 -0.6835 16.1760 16.0680 -1.0324 -0.5816 TS117 128
129 TS444 15.5230 13.5080 -1.1317 -1.0602 18.7910 14.6510 -0.6349 -0.8465 TS444 129
130 TS301 15.1960 12.0370 -1.1814 -1.3352 15.1960 12.3640 -1.1814 -1.2741 TS301 130
131 TS206 14.3790 12.7450 -1.3055 -1.2029 14.3790 12.7450 -1.3055 -1.2029 TS206 131
132 TS009 14.2160 10.5120 -1.3303 -1.6203 14.2160 10.5120 -1.3303 -1.6203 TS009 132
133 TS311 13.7250 13.4530 -1.4050 -1.0705 14.2160 13.6170 -1.3303 -1.0398 TS311 133
134 TS278 13.3990 12.1460 -1.4545 -1.3148 13.3990 12.1460 -1.4545 -1.3148 TS278 134
135 AL396 13.2350 13.1260 -1.4794 -1.1316 16.8300 16.0680 -0.9330 -0.5816 AL396 135
136 TS347 13.2350 12.5270 -1.4794 -1.2436 29.9020 26.9610 1.0540 1.4547 TS347 136
137 TS358 13.2350 12.5270 -1.4794 -1.2436 14.0520 13.3990 -1.3552 -1.0806 TS358 137
138 TS420 13.2350 11.2200 -1.4794 -1.4879 13.2350 11.2200 -1.4794 -1.4879 TS420 138
139 TS471 13.2350 11.2200 -1.4794 -1.4879 13.2350 11.2200 -1.4794 -1.4879 TS471 139
140 TS345 13.0720 11.2750 -1.5042 -1.4777 15.8500 15.8500 -1.0819 -0.6224 TS345 140
141 TS296 12.9080 12.5820 -1.5291 -1.2333 18.1370 16.7210 -0.7343 -0.4596 TS296 141
142 TS403 12.4180 10.6210 -1.6036 -1.5999 12.4180 10.6210 -1.6036 -1.5999 TS403 142
143 TS171 11.2750 8.6600 -1.7774 -1.9665 11.2750 8.6600 -1.7774 -1.9665 TS171 143
144 TS018 10.6210 9.5320 -1.8768 -1.8035 10.6210 9.5320 -1.8768 -1.8035 TS018 144
145 AL285 8.4970 8.4970 -2.1996 -1.9970 16.6670 12.8540 -0.9578 -1.1825 AL285 145
146 TS207 8.1700 7.9520 -2.2493 -2.0989 17.3200 14.5970 -0.8585 -0.8566 TS207 146
147 TS014             -0.4648 -0.2915             -0.4648 -0.2915 TS014 147
148 TS020             -0.4648 -0.2915             -0.4648 -0.2915 TS020 148
149 TS039             -0.4648 -0.2915             -0.4648 -0.2915 TS039 149
150 TS044             -0.4648 -0.2915             -0.4648 -0.2915 TS044 150
151 TS074             -0.4648 -0.2915             -0.4648 -0.2915 TS074 151
152 TS086             -0.4648 -0.2915             -0.4648 -0.2915 TS086 152
153 TS105             -0.4648 -0.2915             -0.4648 -0.2915 TS105 153
154 TS140             -0.4648 -0.2915             -0.4648 -0.2915 TS140 154
155 TS149             -0.4648 -0.2915             -0.4648 -0.2915 TS149 155
156 TS150             -0.4648 -0.2915             -0.4648 -0.2915 TS150 156
157 TS152             -0.4648 -0.2915             -0.4648 -0.2915 TS152 157
158 TS154             -0.4648 -0.2915             -0.4648 -0.2915 TS154 158
159 TS160             -0.4648 -0.2915             -0.4648 -0.2915 TS160 159
160 TS178             -0.4648 -0.2915             -0.4648 -0.2915 TS178 160
161 TS180             -0.4648 -0.2915             -0.4648 -0.2915 TS180 161
162 TS184             -0.4648 -0.2915             -0.4648 -0.2915 TS184 162
163 TS189             -0.4648 -0.2915             -0.4648 -0.2915 TS189 163
164 TS228             -0.4648 -0.2915             -0.4648 -0.2915 TS228 164
165 TS250             -0.4648 -0.2915             -1.5787 -1.8850 TS250 165
166 TS254             -0.4648 -0.2915             -0.4648 -0.2915 TS254 166
167 TS257             -0.4648 -0.2915             -0.4648 -0.2915 TS257 167
168 TS261             -0.4648 -0.2915             -0.4648 -0.2915 TS261 168
169 TS263             -0.4648 -0.2915             -0.4648 -0.2915 TS263 169
170 TS269             -0.4648 -0.2915             -0.4648 -0.2915 TS269 170
171 TS282             -0.4648 -0.2915             -0.4648 -0.2915 TS282 171
172 TS322             -0.4648 -0.2915             -0.4648 -0.2915 TS322 172
173 TS330             -0.4648 -0.2915             -0.4648 -0.2915 TS330 173
174 TS331             -0.4648 -0.2915             -0.4648 -0.2915 TS331 174
175 TS336             -0.4648 -0.2915             -0.4648 -0.2915 TS336 175
176 TS362             -0.4648 -0.2915             -0.4648 -0.2915 TS362 176
177 TS433             -0.4648 -0.2915             -0.4648 -0.2915 TS433 177
178 TS439             -0.4648 -0.2915             -0.4648 -0.2915 TS439 178