T0564

SlR115 from unknown species

Target sequence:

>T0564 SlR115, unknown species, 89 residues
MAPLQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQGTLSYKGTRFVGFVSRTPDNE

HHsearch_pdb70_15May10, HHsearch_scop70_1.75, HHsearch_pfamA.24.0, HorAServer, Dali Result

Structure:

Method: NMR

Determined by: NESG

PDB ID: 2l0c

Jmol of T0564 structure : 2l0c

PyMOL of T0564

Domains:

Single domain protein.

DomainID	Chain	Range in raw pdb	Range in targetpdb
T0564	A	1-97	3-85

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

two layers, a/b, beta sheet order varies in different predictions

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM alignment.

Closest templates:

Template manually selected by shuoyong:

1wjj_A | PyMOL of 1wjj A, weak similarity, but the real structure may not like a OB-fold.

Template selected by HHpred server group:

1wjj_A | PyMOL | this pdbchain contains scop domain: d1wjja_ A:

2jys_A | PyMOL

Target sequence - PDB file inconsistencies:

Sequence classification:

Protein of unknown function (DUF2500) (PF10694).

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

#	GROUP ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	TS ↓	TR ↓	↓ GROUP	#
		T0564		T0564		T0564		T0564
		First score		First Z-score		Best score		Best Z-score
1	TS242	69.6430	61.7860	2.4466	2.5733	70.0000	62.5000	2.4733	2.6346	TS242	1
2	TS077	67.5000	59.6430	2.2864	2.3894	67.5000	59.6430	2.2864	2.3894	TS077	2
3	TS286	67.5000	59.6430	2.2864	2.3894	67.5000	59.6430	2.2864	2.3894	TS286	3
4	TS060	67.5000	59.6430	2.2864	2.3894	67.5000	59.6430	2.2864	2.3894	TS060	4
5	TS110	67.1430	60.4760	2.2597	2.4609	67.1430	60.4760	2.2597	2.4609	TS110	5
6	TS407	67.1430	53.3330	2.2597	1.8480	67.1430	55.8330	2.2597	2.0625	TS407	6
7	TS094	66.4290	61.9050	2.2063	2.5835	67.5000	61.9050	2.2864	2.5835	TS094	7
8	TS470	66.4290	61.9050	2.2063	2.5835	66.4290	61.9050	2.2063	2.5835	TS470	8
9	TS361	66.4290	59.2860	2.2063	2.3588	66.4290	59.2860	2.2063	2.3588	TS361	9
10	TS429	66.4290	57.8570	2.2063	2.2362	66.4290	57.8570	2.2063	2.2362	TS429	10
11	TS147	66.0710	60.1190	2.1796	2.4303	66.0710	60.1190	2.1796	2.4303	TS147	11
12	TS033	66.0710	54.8810	2.1796	1.9808	66.0710	54.8810	2.1796	1.9808	TS033	12
13	TS490	65.0000	60.0000	2.0995	2.4200	67.8570	60.0000	2.3131	2.4200	TS490	13
14	TS096	65.0000	59.0480	2.0995	2.3384	65.0000	59.0480	2.0995	2.3384	TS096	14
15	TS035	64.6430	54.8810	2.0728	1.9808	64.6430	54.8810	2.0728	1.9808	TS035	15
16	TS452	64.6430	54.8810	2.0728	1.9808	65.7140	57.2620	2.1529	2.1851	TS452	16
17	TS276	64.6430	52.7380	2.0728	1.7969	64.6430	52.7380	2.0728	1.7969	TS276	17
18	TS399	63.9290	54.6430	2.0195	1.9604	68.2140	59.0480	2.3398	2.3384	TS399	18
19	TS172	61.4290	52.1430	1.8326	1.7459	66.0710	57.5000	2.1796	2.2055	TS172	19
20	TS449	59.6430	51.9050	1.6991	1.7255	59.6430	51.9050	1.6991	1.7255	TS449	20
21	TS453	59.6430	51.9050	1.6991	1.7255	59.6430	51.9050	1.6991	1.7255	TS453	21
22	TS346	59.6430	51.9050	1.6991	1.7255	59.6430	51.9050	1.6991	1.7255	TS346	22
23	TS186	58.9290	51.3100	1.6458	1.6744	60.3570	53.9290	1.7525	1.8991	TS186	23
24	TS214	58.9290	49.4050	1.6458	1.5109	60.3570	51.5480	1.7525	1.6948	TS214	24
25	TS307	58.9290	47.7380	1.6458	1.3679	60.0000	55.0000	1.7258	1.9910	TS307	25
26	TS366	56.4290	42.6190	1.4589	0.9287	56.4290	42.6190	1.4589	0.9287	TS366	26
27	TS063	56.4290	42.6190	1.4589	0.9287	56.4290	42.6190	1.4589	0.9287	TS063	27
28	TS192	55.7140	48.5710	1.4055	1.4394	55.7140	48.5710	1.4055	1.4394	TS192	28
29	TS165	55.0000	50.2380	1.3521	1.5824	55.0000	50.2380	1.3521	1.5824	TS165	29
30	TS299	55.0000	44.2860	1.3521	1.0717	55.3570	47.9760	1.3788	1.3883	TS299	30
31	TS300	52.1430	48.0950	1.1385	1.3985	66.4290	61.9050	2.2063	2.5835	TS300	31
32	TS102	49.6430	44.1670	0.9517	1.0615	49.6430	44.1670	0.9517	1.0615	TS102	32
33	TS423	48.9290	39.8810	0.8983	0.6937	48.9290	41.9050	0.8983	0.8674	TS423	33
34	TS345	48.2140	38.9290	0.8449	0.6121	50.3570	38.9290	1.0051	0.6121	TS345	34
35	TS297	47.8570	41.1900	0.8182	0.8061	51.7860	44.8810	1.1119	1.1228	TS297	35
36	TS302	47.8570	40.0000	0.8182	0.7040	60.3570	52.7380	1.7525	1.7969	TS302	36
37	TS142	47.8570	40.0000	0.8182	0.7040	60.3570	52.7380	1.7525	1.7969	TS142	37
38	TS104	46.7860	40.1190	0.7381	0.7142	46.7860	40.1190	0.7381	0.7142	TS104	38
39	TS418	46.7860	38.2140	0.7381	0.5507	46.7860	41.3100	0.7381	0.8164	TS418	39
40	TS484	46.4290	43.0950	0.7115	0.9695	47.1430	43.0950	0.7648	0.9695	TS484	40
41	TS391	46.4290	37.3810	0.7115	0.4792	46.4290	37.3810	0.7115	0.4792	TS391	41
42	TS127	45.0000	38.0950	0.6047	0.5405	45.0000	39.5240	0.6047	0.6631	TS127	42
43	TS244	44.2860	40.7140	0.5513	0.7652	58.2140	48.6900	1.5923	1.4496	TS244	43
44	TS365	44.2860	37.3810	0.5513	0.4792	44.2860	37.3810	0.5513	0.4792	TS365	44
45	TS037	43.5710	38.0950	0.4978	0.5405	66.4290	60.9520	2.2063	2.5017	TS037	45
46	TS199	43.5710	36.9050	0.4978	0.4384	43.5710	36.9050	0.4978	0.4384	TS199	46
47	TS386	43.5710	32.8570	0.4978	0.0911	43.9290	38.6900	0.5246	0.5916	TS386	47
48	TS055	43.2140	37.7380	0.4712	0.5099	43.2140	37.7380	0.4712	0.5099	TS055	48
49	TS380	43.2140	37.5000	0.4712	0.4894	46.4290	41.5480	0.7115	0.8368	TS380	49
50	TS113	43.2140	35.5950	0.4712	0.3260	66.4290	55.8330	2.2063	2.0625	TS113	50
51	TS481	42.8570	37.6190	0.4445	0.4997	42.8570	37.6190	0.4445	0.4997	TS481	51
52	TS324	42.5000	37.7380	0.4178	0.5099	42.5000	37.7380	0.4178	0.5099	TS324	52
53	TS088	42.5000	35.3570	0.4178	0.3056	42.5000	35.3570	0.4178	0.3056	TS088	53
54	TS420	42.1430	39.2860	0.3911	0.6427	42.1430	39.2860	0.3911	0.6427	TS420	54
55	TS395	42.1430	34.2860	0.3911	0.2137	43.5710	39.2860	0.4978	0.6427	TS395	55
56	TS273	41.7860	35.1190	0.3644	0.2851	48.9290	39.4050	0.8983	0.6529	TS273	56
57	TS001	41.7860	35.1190	0.3644	0.2851	48.9290	39.4050	0.8983	0.6529	TS001	57
58	TS240	41.0710	36.3100	0.3110	0.3873	41.0710	36.3100	0.3110	0.3873	TS240	58
59	TS321	41.0710	36.3100	0.3110	0.3873	44.2860	37.1430	0.5513	0.4588	TS321	59
60	TS083	40.3570	39.1670	0.2576	0.6325	40.3570	39.1670	0.2576	0.6325	TS083	60
61	TS428	40.3570	36.5480	0.2576	0.4078	66.4290	61.9050	2.2063	2.5835	TS428	61
62	TS153	40.3570	34.8810	0.2576	0.2647	40.3570	34.8810	0.2576	0.2647	TS153	62
63	TS016	40.3570	34.6430	0.2576	0.2443	40.7140	36.5480	0.2843	0.4078	TS016	63
64	TS042	40.0000	34.2860	0.2309	0.2137	48.9290	35.3570	0.8983	0.3056	TS042	64
65	TS424	39.2860	29.2860	0.1776	-0.2154	41.7860	38.4520	0.3644	0.5711	TS424	65
66	TS236	38.5710	36.1900	0.1241	0.3770	42.1430	37.8570	0.3911	0.5201	TS236	66
67	TS075	38.5710	34.0480	0.1241	0.1932	38.5710	34.6430	0.1241	0.2443	TS075	67
68	TS170	38.5710	32.6190	0.1241	0.0706	41.7860	38.6900	0.3644	0.5916	TS170	68
69	TS295	38.5710	31.3100	0.1241	-0.0417	48.5710	37.3810	0.8716	0.4792	TS295	69
70	TS353	38.2140	30.5950	0.0974	-0.1030	41.7860	38.4520	0.3644	0.5711	TS353	70
71	TS047	37.1430	33.8100	0.0174	0.1728	37.1430	33.8100	0.0174	0.1728	TS047	71
72	TS114	36.7860	32.5000	-0.0093	0.0604	64.6430	54.4050	2.0728	1.9400	TS114	72
73	TS400	36.7860	29.8810	-0.0093	-0.1643	37.8570	30.2380	0.0708	-0.1337	TS400	73
74	TS200	36.4290	30.2380	-0.0360	-0.1337	36.4290	30.2380	-0.0360	-0.1337	TS200	74
75	TS117	36.4290	27.8570	-0.0360	-0.3380	36.4290	28.2140	-0.0360	-0.3073	TS117	75
76	TS275	35.7140	33.5710	-0.0894	0.1523	35.7140	33.5710	-0.0894	0.1523	TS275	76
77	TS402	35.3570	32.2620	-0.1161	0.0400	36.0710	33.2140	-0.0627	0.1217	TS402	77
78	TS253	35.0000	30.9520	-0.1428	-0.0724	35.0000	31.7860	-0.1428	-0.0008	TS253	78
79	TS409	35.0000	27.3810	-0.1428	-0.3788	35.3570	32.0240	-0.1161	0.0196	TS409	79
80	TS457	34.6430	31.7860	-0.1695	-0.0008	35.0000	32.1430	-0.1428	0.0298	TS457	80
81	TS408	34.6430	30.5950	-0.1695	-0.1030	65.0000	58.0950	2.0995	2.2566	TS408	81
82	TS215	34.2860	32.3810	-0.1962	0.0502	34.2860	32.7380	-0.1962	0.0808	TS215	82
83	TS080	34.2860	32.3810	-0.1962	0.0502	34.2860	32.7380	-0.1962	0.0808	TS080	83
84	TS002	34.2860	32.3810	-0.1962	0.0502	34.2860	32.3810	-0.1962	0.0502	TS002	84
85	TS119	34.2860	31.5480	-0.1962	-0.0213	34.2860	31.5480	-0.1962	-0.0213	TS119	85
86	TS316	34.2860	31.1900	-0.1962	-0.0520	40.3570	34.8810	0.2576	0.2647	TS316	86
87	TS264	33.9290	30.5950	-0.2228	-0.1030	39.2860	38.0950	0.1776	0.5405	TS264	87
88	TS218	33.5710	31.3100	-0.2496	-0.0417	34.2860	31.3100	-0.1962	-0.0417	TS218	88
89	TS419	32.5000	30.8330	-0.3296	-0.0826	63.5710	50.2380	1.9927	1.5824	TS419	89
90	TS166	32.5000	30.8330	-0.3296	-0.0826	33.9290	31.7860	-0.2228	-0.0008	TS166	90
91	TS291	32.1430	24.0480	-0.3563	-0.6648	44.2860	35.9520	0.5513	0.3566	TS291	91
92	TS026	31.7860	27.6190	-0.3830	-0.3584	50.3570	45.5950	1.0051	1.1840	TS026	92
93	TS355	31.7860	27.5000	-0.3830	-0.3686	40.0000	36.4290	0.2309	0.3975	TS355	93
94	TS248	31.0710	27.5000	-0.4365	-0.3686	31.0710	27.5000	-0.4365	-0.3686	TS248	94
95	TS084	30.7140	27.6190	-0.4631	-0.3584	48.2140	42.7380	0.8449	0.9389	TS084	95
96	TS028	29.2860	22.1430	-0.5699	-0.8283	31.0710	29.1670	-0.4365	-0.2256	TS028	96
97	TS350	28.5710	25.1190	-0.6233	-0.5729	30.0000	26.1900	-0.5165	-0.4810	TS350	97
98	TS103	28.5710	22.6190	-0.6233	-0.7874	33.5710	30.0000	-0.2496	-0.1541	TS103	98
99	TS056	27.8570	25.2380	-0.6767	-0.5627	27.8570	25.2380	-0.6767	-0.5627	TS056	99
100	TS282	27.8570	22.1430	-0.6767	-0.8283	28.2140	23.5710	-0.6500	-0.7057	TS282	100
101	TS435	27.5000	23.9290	-0.7034	-0.6750	44.2860	39.5240	0.5513	0.6631	TS435	101
102	TS319	27.1430	24.2860	-0.7301	-0.6444	33.9290	32.0240	-0.2228	0.0196	TS319	102
103	TS289	26.4290	21.4290	-0.7834	-0.8895	26.4290	21.4290	-0.7834	-0.8895	TS289	103
104	TS257	26.0710	25.5950	-0.8102	-0.5321	39.2860	35.9520	0.1776	0.3566	TS257	104
105	TS045	26.0710	23.9290	-0.8102	-0.6750	26.0710	23.9290	-0.8102	-0.6750	TS045	105
106	TS433	26.0710	23.9290	-0.8102	-0.6750	26.0710	23.9290	-0.8102	-0.6750	TS433	106
107	TS331	26.0710	23.9290	-0.8102	-0.6750	26.0710	23.9290	-0.8102	-0.6750	TS331	107
108	TS269	25.7140	21.7860	-0.8369	-0.8589	25.7140	21.7860	-0.8369	-0.8589	TS269	108
109	TS152	25.7140	21.7860	-0.8369	-0.8589	25.7140	21.7860	-0.8369	-0.8589	TS152	109
110	TS304	25.7140	21.1900	-0.8369	-0.9100	32.8570	29.7620	-0.3030	-0.1745	TS304	110
111	RANDOM	25.59	21.30	-0.8461	-0.9006	25.59	21.30	-0.8461	-0.9006	RANDOM	111
112	TS477	25.3570	22.9760	-0.8635	-0.7568	64.6430	52.7380	2.0728	1.7969	TS477	112
113	TS373	25.3570	22.0240	-0.8635	-0.8385	31.7860	27.3810	-0.3830	-0.3788	TS373	113
114	TS360	25.3570	22.0240	-0.8635	-0.8385	25.3570	23.2140	-0.8635	-0.7364	TS360	114
115	TS328	25.3570	20.3570	-0.8635	-0.9815	25.3570	20.3570	-0.8635	-0.9815	TS328	115
116	TS018	25.0000	22.3810	-0.8902	-0.8078	26.0710	22.5000	-0.8102	-0.7976	TS018	116
117	TS173	25.0000	20.9520	-0.8902	-0.9305	31.7860	30.7140	-0.3830	-0.0928	TS173	117
118	TS014	24.6430	22.2620	-0.9169	-0.8180	25.7140	22.2620	-0.8369	-0.8180	TS014	118
119	TS311	24.6430	20.5950	-0.9169	-0.9611	26.0710	22.2620	-0.8102	-0.8180	TS311	119
120	TS296	24.6430	19.7620	-0.9169	-1.0326	42.5000	37.7380	0.4178	0.5099	TS296	120
121	TS461	24.2860	23.0950	-0.9436	-0.7466	29.2860	27.2620	-0.5699	-0.3890	TS461	121
122	TS213	24.2860	21.9050	-0.9436	-0.8487	25.7140	24.5240	-0.8369	-0.6240	TS213	122
123	TS208	24.2860	21.6670	-0.9436	-0.8691	27.5000	24.6430	-0.7034	-0.6137	TS208	123
124	TS229	24.2860	21.4290	-0.9436	-0.8895	24.6430	22.5000	-0.9169	-0.7976	TS229	124
125	TS207	24.2860	21.4290	-0.9436	-0.8895	29.6430	21.6670	-0.5432	-0.8691	TS207	125
126	TS220	24.2860	20.2380	-0.9436	-0.9917	47.8570	40.0000	0.8182	0.7040	TS220	126
127	TS447	24.2860	20.2380	-0.9436	-0.9917	47.8570	40.0000	0.8182	0.7040	TS447	127
128	TS250	23.9290	20.5950	-0.9703	-0.9611	27.1430	23.3330	-0.7301	-0.7262	TS250	128
129	TS182	23.9290	19.4050	-0.9703	-1.0632	27.8570	23.0950	-0.6767	-0.7466	TS182	129
130	TS174	23.9290	18.5710	-0.9703	-1.1348	37.8570	35.7140	0.0708	0.3362	TS174	130
131	TS403	23.5710	19.7620	-0.9970	-1.0326	23.9290	21.4290	-0.9703	-0.8895	TS403	131
132	TS476	23.5710	19.2860	-0.9970	-1.0734	23.5710	19.2860	-0.9970	-1.0734	TS476	132
133	TS129	23.5710	18.5710	-0.9970	-1.1348	23.9290	19.4050	-0.9703	-1.0632	TS129	133
134	TS171	23.2140	21.0710	-1.0237	-0.9202	23.2140	21.0710	-1.0237	-0.9202	TS171	134
135	TS450	23.2140	21.0710	-1.0237	-0.9202	23.2140	21.0710	-1.0237	-0.9202	TS450	135
136	TS322	23.2140	21.0710	-1.0237	-0.9202	27.8570	24.5240	-0.6767	-0.6240	TS322	136
137	TS020	23.2140	18.4520	-1.0237	-1.1450	33.9290	26.5480	-0.2228	-0.4503	TS020	137
138	TS444	22.8570	19.5240	-1.0504	-1.0530	27.1430	23.3330	-0.7301	-0.7262	TS444	138
139	TS029	22.8570	19.4050	-1.0504	-1.0632	22.8570	19.4050	-1.0504	-1.0632	TS029	139
140	TS140	22.5000	20.4760	-1.0771	-0.9713	25.0000	22.6190	-0.8902	-0.7874	TS140	140
141	TS039	22.5000	19.8810	-1.0771	-1.0223	27.5000	23.4520	-0.7034	-0.7159	TS039	141
142	TS086	22.5000	19.8810	-1.0771	-1.0223	27.5000	21.9050	-0.7034	-0.8487	TS086	142
143	TS314	22.5000	16.4290	-1.0771	-1.3185	26.4290	22.8570	-0.7834	-0.7670	TS314	143
144	TS149	22.5000	16.4290	-1.0771	-1.3185	22.5000	16.4290	-1.0771	-1.3185	TS149	144
145	TS471	22.1430	18.8100	-1.1038	-1.1142	22.1430	18.8100	-1.1038	-1.1142	TS471	145
146	AL285	21.7860	19.6430	-1.1305	-1.0428	24.6430	23.2140	-0.9169	-0.7364	AL285	146
147	AL396	21.7860	19.2860	-1.1305	-1.0734	27.8570	26.1900	-0.6767	-0.4810	AL396	147
148	TS279	21.4290	19.7620	-1.1571	-1.0326	23.9290	20.5950	-0.9703	-0.9611	TS279	148
149	TS301	21.4290	18.0950	-1.1571	-1.1756	33.9290	32.0240	-0.2228	0.0196	TS301	149
150	TS206	21.4290	17.8570	-1.1571	-1.1960	21.4290	17.8570	-1.1571	-1.1960	TS206	150
151	TS278	21.0710	17.7380	-1.1839	-1.2062	21.0710	17.7380	-1.1839	-1.2062	TS278	151
152	TS436	18.5710	16.4290	-1.3708	-1.3185	18.5710	16.4290	-1.3708	-1.3185	TS436	152
153	TS333	16.4290	13.2140	-1.5309	-1.5944	26.7860	23.6900	-0.7567	-0.6955	TS333	153
154	TS009			-0.8461	-0.9006			-0.8461	-0.9006	TS009	154
155	TS044			-0.8461	-0.9006			-0.8461	-0.9006	TS044	155
156	TS061			-0.8461	-0.9006			-0.8461	-0.9006	TS061	156
157	TS074			-0.8461	-0.9006			-0.8461	-0.9006	TS074	157
158	TS105			-0.8461	-0.9006			-0.8461	-0.9006	TS105	158
159	TS150			-0.8461	-0.9006			-0.8461	-0.9006	TS150	159
160	TS154			-0.8461	-0.9006			-0.8461	-0.9006	TS154	160
161	TS160			-0.8461	-0.9006			-0.8461	-0.9006	TS160	161
162	TS178			-0.8461	-0.9006			-0.8461	-0.9006	TS178	162
163	TS180			-0.8461	-0.9006			-0.8461	-0.9006	TS180	163
164	TS184			-0.8461	-0.9006			-0.8461	-0.9006	TS184	164
165	TS189			-0.8461	-0.9006			-0.8461	-0.9006	TS189	165
166	TS228			-0.8461	-0.9006			-0.8461	-0.9006	TS228	166
167	TS245			-0.8461	-0.9006			-0.8461	-0.9006	TS245	167
168	TS254			-0.8461	-0.9006			-0.8461	-0.9006	TS254	168
169	TS261			-0.8461	-0.9006			-0.8461	-0.9006	TS261	169
170	TS263			-0.8461	-0.9006			-0.8461	-0.9006	TS263	170
171	TS330			-0.8461	-0.9006			-0.8461	-0.9006	TS330	171
172	TS336			-0.8461	-0.9006			-0.8461	-0.9006	TS336	172
173	TS347			-0.8461	-0.9006			-0.8461	-0.9006	TS347	173
174	TS358			-0.8461	-0.9006			-0.8461	-0.9006	TS358	174
175	TS362			-0.8461	-0.9006			-0.8461	-0.9006	TS362	175
176	TS382			-0.8461	-0.9006			-0.8461	-0.9006	TS382	176
177	TS439			-0.8461	-0.9006			-0.8461	-0.9006	TS439	177
178	TS458			-0.8461	-0.9006			-0.8461	-0.9006	TS458	178

Targets
515	516	517	518
519	520	521	522
523	524	525	526
527	528	529	530
531	532	533	534
535	536	537	538
539	540	541	542
543	544	545	546
547	548	549	550
551	552	553	554
555	556	557	558
559	560	561	562
563	564	565	566
567	568	569	570
571	572	573	574
575	576	577	578
579	580	581	582
583	584	585	586
587	588	589	590
591	592	593	594
595	596	597	598
599	600	601	602
603	604	605	606
607	608	609	610
611	612	613	614
615	616	617	618
619	620	621	622
623	624	625	626
627	628	629	630
631	632	633	634
635	636	637	638
639	640	641	642
643