T0625

Targets
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519 520 521 522
523 524 525 526
527 528 529 530
531 532 533 534
535 536 537 538
539 540 541 542
543 544 545 546
547 548 549 550
551 552 553 554
555 556 557 558
559 560 561 562
563 564 565 566
567 568 569 570
571 572 573 574
575 576 577 578
579 580 581 582
583 584 585 586
587 588 589 590
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599 600 601 602
603 604 605 606
607 608 609 610
611 612 613 614
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623 624 625 626
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631 632 633 634
635 636 637 638
639 640 641 642
643      

T0625

YP_612324.1 from SILICIBACTER SP. TM1040

Target type: Human/Server

Target sequence:

>T0625 YP_612324.1, SILICIBACTER SP. TM1040, 233 residues
MTSFDRPFEAARPDGENPSAHETLAEGGRLRPEATYTIPARQGRAIRMAQGEALMVINRDGSQIGDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNRRRPILTLLEDSSPGVHDTLVASCDVHRYAQLGHEGYHDNCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVVISCCPMDLLPINGEEAQPRALDVRLRPRPA

HHsearch_pdb70_15May10,  HHsearch_scop70_1.75,  HHsearch_pfamA.24.0,  HorAServer

Structure:
Method: X-ray, res= Å, R/Rfree=
Determined by: JCSG
PDB ID: 3oru

Jmol of T0625 structure : 3oru

PyMOL of T0625

Domains:  

Single domain protein.   

DomainIDChainRange in raw pdbRange in targetpdb
T0625A2-2322-232

Structure classification:

The description below was written months before target structure release, thus it only presents shuoyong's personal thoughts simply based on sequence. Please be aware that it may contain laughable errors. It is certainly not our final assessment on this target. We will revise this section (and the sequence classification too) in a short time

Not decided yet, needs to look at HorA server result.

CASP category:

We evaluate this target on whole chain based on domainplot

Whole chain: TBM  alignment.

Closest templates:

Template manually selected by shuoyong:

3di4_A | PyMOL of 3di4 A

  

Template selected by HHpred server group:

Target sequence - PDB file inconsistencies:

Sequence classification:

Uncharacterized protein DUF1989 (PF09347)

All predictions:

TS (GDT_TS score), TR (GDT_TS with penalty [reference]

# GROUP ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ TS ↓ TR ↓ ↓ GROUP #
T0625 T0625 T0625 T0625
First score First Z-score Best score Best Z-score
1 TS324 69.4810 65.2960 0.8673 0.9710 69.4810 65.2960 0.8673 0.9710 TS324 1
2 TS061 68.8310 63.2760 0.8393 0.8765 68.8310 64.0690 0.8393 0.9136 TS061 2
3 TS449 68.5060 62.6620 0.8253 0.8477 68.5060 62.6620 0.8253 0.8477 TS449 3
4 TS453 68.5060 62.6620 0.8253 0.8477 68.5060 62.6620 0.8253 0.8477 TS453 4
5 TS346 68.5060 62.6620 0.8253 0.8477 68.5060 62.6620 0.8253 0.8477 TS346 5
6 TS028 68.0740 62.2290 0.8067 0.8275 68.0740 62.2290 0.8067 0.8275 TS028 6
7 TS295 67.4240 59.7040 0.7787 0.7093 70.2380 65.6930 0.8999 0.9896 TS295 7
8 TS345 67.3160 61.1830 0.7741 0.7785 67.3160 61.7240 0.7741 0.8038 TS345 8
9 TS192 66.8830 55.5560 0.7554 0.5152 66.8830 55.5560 0.7554 0.5152 TS192 9
10 TS016 66.4500 61.7600 0.7368 0.8055 66.4500 61.9410 0.7368 0.8140 TS016 10
11 TS035 66.1260 59.5600 0.7228 0.7026 66.1260 59.5600 0.7228 0.7026 TS035 11
12 TS096 65.9090 60.9310 0.7135 0.7667 66.4500 62.6260 0.7368 0.8460 TS096 12
13 TS299 65.9090 60.2810 0.7135 0.7363 65.9090 60.2810 0.7135 0.7363 TS299 13
14 TS481 65.9090 59.6320 0.7135 0.7059 66.1260 59.6320 0.7228 0.7059 TS481 14
15 TS104 65.5840 62.2660 0.6995 0.8292 65.5840 62.2660 0.6995 0.8292 TS104 15
16 TS400 65.4760 60.3540 0.6948 0.7397 65.4760 60.3540 0.6948 0.7397 TS400 16
17 TS399 65.3680 59.3800 0.6902 0.6941 65.3680 59.3800 0.6902 0.6941 TS399 17
18 TS236 65.3680 59.3800 0.6902 0.6941 65.3680 60.1010 0.6902 0.7279 TS236 18
19 TS114 65.3680 59.3800 0.6902 0.6941 65.3680 60.1010 0.6902 0.7279 TS114 19
20 TS113 65.3680 58.9470 0.6902 0.6739 65.3680 59.7400 0.6902 0.7110 TS113 20
21 TS037 65.2600 60.0650 0.6855 0.7262 65.2600 60.0650 0.6855 0.7262 TS037 21
22 TS470 65.1520 60.1010 0.6809 0.7279 65.3680 60.1010 0.6902 0.7279 TS470 22
23 TS407 65.1520 59.8850 0.6809 0.7178 65.3680 59.8850 0.6902 0.7178 TS407 23
24 TS429 65.0430 60.9310 0.6762 0.7667 65.1520 60.9310 0.6809 0.7667 TS429 24
25 TS088 65.0430 60.2810 0.6762 0.7363 66.5580 60.2810 0.7414 0.7363 TS088 25
26 TS055 64.9350 60.8950 0.6715 0.7650 67.5320 60.8950 0.7834 0.7650 TS055 26
27 TS319 64.9350 59.8850 0.6715 0.7178 64.9350 59.8850 0.6715 0.7178 TS319 27
28 TS094 64.9350 59.3800 0.6715 0.6941 65.3680 60.1010 0.6902 0.7279 TS094 28
29 TS386 64.9350 59.3800 0.6715 0.6941 65.2600 60.2090 0.6855 0.7329 TS386 29
30 TS242 64.9350 59.0910 0.6715 0.6806 65.0430 59.4160 0.6762 0.6958 TS242 30
31 TS110 64.8270 59.6320 0.6669 0.7059 64.8270 59.6320 0.6669 0.7059 TS110 31
32 TS321 64.8270 58.0450 0.6669 0.6316 69.0480 63.7810 0.8487 0.9001 TS321 32
33 TS418 64.7190 61.1110 0.6622 0.7751 67.4240 62.7340 0.7787 0.8511 TS418 33
34 TS056 64.7190 59.1630 0.6622 0.6840 64.7190 59.1630 0.6622 0.6840 TS056 34
35 TS365 64.6100 60.1370 0.6575 0.7296 64.6100 60.1370 0.6575 0.7296 TS365 35
36 TS276 64.6100 59.4160 0.6575 0.6958 64.6100 59.4160 0.6575 0.6958 TS276 36
37 TS477 64.6100 59.4160 0.6575 0.6958 64.6100 59.4160 0.6575 0.6958 TS477 37
38 TS286 64.6100 59.4160 0.6575 0.6958 64.6100 59.4160 0.6575 0.6958 TS286 38
39 TS490 64.6100 58.2610 0.6575 0.6418 65.1520 59.4520 0.6809 0.6975 TS490 39
40 TS300 64.5020 61.4720 0.6529 0.7920 64.5020 61.9770 0.6529 0.8157 TS300 40
41 TS435 64.5020 59.0910 0.6529 0.6806 64.5020 59.0910 0.6529 0.6806 TS435 41
42 TS077 64.5020 58.8740 0.6529 0.6704 64.5020 58.8740 0.6529 0.6704 TS077 42
43 TS199 64.5020 57.7200 0.6529 0.6164 64.5020 57.7200 0.6529 0.6164 TS199 43
44 TS361 64.3940 57.8280 0.6482 0.6215 65.0430 58.7660 0.6762 0.6654 TS361 44
45 TS033 64.2860 60.9670 0.6436 0.7684 64.2860 60.9670 0.6436 0.7684 TS033 45
46 TS360 64.2860 60.4620 0.6436 0.7448 64.2860 60.4620 0.6436 0.7448 TS360 46
47 TS423 64.2860 58.1530 0.6436 0.6367 64.2860 59.0190 0.6436 0.6772 TS423 47
48 TS278 64.2860 51.9480 0.6436 0.3463 64.2860 51.9480 0.6436 0.3463 TS278 48
49 TS452 64.1770 58.7660 0.6389 0.6654 64.2860 58.7660 0.6436 0.6654 TS452 49
50 TS275 64.1770 57.9000 0.6389 0.6249 64.7190 60.1010 0.6622 0.7279 TS275 50
51 TS419 64.1770 57.3230 0.6389 0.5979 64.8270 59.6680 0.6669 0.7076 TS419 51
52 TS166 64.1770 57.3230 0.6389 0.5979 64.1770 57.3230 0.6389 0.5979 TS166 52
53 TS047 64.0690 59.7400 0.6342 0.7110 64.0690 59.7400 0.6342 0.7110 TS047 53
54 TS240 64.0690 59.6680 0.6342 0.7076 64.0690 59.6680 0.6342 0.7076 TS240 54
55 TS428 64.0690 59.6680 0.6342 0.7076 64.5020 61.9770 0.6529 0.8157 TS428 55
56 TS002 64.0690 57.7920 0.6342 0.6198 64.0690 57.7920 0.6342 0.6198 TS002 56
57 TS380 63.8530 59.9570 0.6249 0.7211 64.3940 61.9410 0.6482 0.8140 TS380 57
58 TS147 63.8530 58.0810 0.6249 0.6333 63.8530 58.4780 0.6249 0.6519 TS147 58
59 TS119 63.8530 57.8640 0.6249 0.6232 64.9350 59.3800 0.6715 0.6941 TS119 59
60 TS314 63.7450 57.9730 0.6203 0.6283 63.7450 57.9730 0.6203 0.6283 TS314 60
61 TS366 63.5280 58.6220 0.6109 0.6587 63.5280 58.6220 0.6109 0.6587 TS366 61
62 TS328 63.5280 58.3330 0.6109 0.6451 63.5280 58.3330 0.6109 0.6451 TS328 62
63 TS080 63.5280 57.7560 0.6109 0.6181 64.0690 58.1170 0.6342 0.6350 TS080 63
64 TS018 63.5280 57.4680 0.6109 0.6046 63.5280 57.4680 0.6109 0.6046 TS018 64
65 TS102 63.5280 57.3950 0.6109 0.6012 64.5020 58.5140 0.6529 0.6536 TS102 65
66 TS291 63.5280 57.2510 0.6109 0.5945 64.0690 58.5860 0.6342 0.6570 TS291 66
67 TS213 63.5280 56.6740 0.6109 0.5675 64.3940 59.2350 0.6482 0.6873 TS213 67
68 TS353 63.4200 60.8230 0.6063 0.7617 63.4200 60.8230 0.6063 0.7617 TS353 68
69 TS171 63.4200 59.0190 0.6063 0.6772 63.4200 59.0190 0.6063 0.6772 TS171 69
70 TS208 63.4200 58.3690 0.6063 0.6468 64.8270 59.6680 0.6669 0.7076 TS208 70
71 TS476 63.4200 58.0810 0.6063 0.6333 63.4200 58.0810 0.6063 0.6333 TS476 71
72 TS215 63.4200 57.6480 0.6063 0.6131 63.8530 58.4420 0.6249 0.6502 TS215 72
73 TS214 63.4200 56.4940 0.6063 0.5591 64.0690 58.2250 0.6342 0.6401 TS214 73
74 TS302 63.3120 58.4780 0.6016 0.6519 63.3120 58.4780 0.6016 0.6519 TS302 74
75 TS142 63.3120 58.4780 0.6016 0.6519 63.3120 58.4780 0.6016 0.6519 TS142 75
76 TS220 63.3120 58.4780 0.6016 0.6519 63.3120 58.4780 0.6016 0.6519 TS220 76
77 TS447 63.3120 58.4780 0.6016 0.6519 63.3120 58.4780 0.6016 0.6519 TS447 77
78 TS149 63.3120 58.4780 0.6016 0.6519 63.3120 58.4780 0.6016 0.6519 TS149 78
79 TS127 63.3120 58.1170 0.6016 0.6350 63.5280 59.0910 0.6109 0.6806 TS127 79
80 TS103 63.3120 54.4370 0.6016 0.4628 63.4200 57.1070 0.6063 0.5878 TS103 80
81 TS402 63.2030 57.7200 0.5969 0.6164 65.2600 59.4880 0.6855 0.6992 TS402 81
82 TS063 63.2030 57.1430 0.5969 0.5894 64.9350 60.3170 0.6715 0.7380 TS063 82
83 TS186 62.9870 55.3390 0.5876 0.5050 64.2860 59.1630 0.6436 0.6840 TS186 83
84 TS409 62.8790 57.3950 0.5830 0.6012 62.8790 57.3950 0.5830 0.6012 TS409 84
85 TS420 62.8790 55.8080 0.5830 0.5270 62.8790 55.8080 0.5830 0.5270 TS420 85
86 TS471 62.8790 55.8080 0.5830 0.5270 62.8790 55.8080 0.5830 0.5270 TS471 86
87 TS395 62.7710 59.2350 0.5783 0.6873 62.7710 59.2350 0.5783 0.6873 TS395 87
88 TS105 62.7710 58.3690 0.5783 0.6468 62.7710 58.3690 0.5783 0.6468 TS105 88
89 TS436 62.7710 57.5760 0.5783 0.6097 62.7710 57.5760 0.5783 0.6097 TS436 89
90 TS165 62.6620 49.8560 0.5736 0.2484 63.8530 58.2250 0.6249 0.6401 TS165 90
91 TS458 62.5540 57.7200 0.5690 0.6164 64.9350 58.6580 0.6715 0.6603 TS458 91
92 TS307 62.3380 58.1530 0.5597 0.6367 62.3380 58.1530 0.5597 0.6367 TS307 92
93 TS403 62.2290 51.1900 0.5550 0.3108 63.3120 56.3850 0.6016 0.5540 TS403 93
94 TS382 62.1210 56.5660 0.5503 0.5624 64.8270 58.6940 0.6669 0.6620 TS382 94
95 TS311 62.1210 56.4940 0.5503 0.5591 63.0950 57.5400 0.5923 0.6080 TS311 95
96 TS273 62.1210 54.4010 0.5503 0.4611 64.9350 59.8850 0.6715 0.7178 TS273 96
97 TS001 62.1210 54.4010 0.5503 0.4611 64.7190 60.1010 0.6622 0.7279 TS001 97
98 TS296 62.1210 54.4010 0.5503 0.4611 64.9350 59.8850 0.6715 0.7178 TS296 98
99 TS245 62.0130 55.2310 0.5457 0.5000 62.0130 55.2310 0.5457 0.5000 TS245 99
100 TS457 61.9050 53.2470 0.5410 0.4071 61.9050 55.7000 0.5410 0.5219 TS457 100
101 TS172 61.7970 49.8200 0.5364 0.2467 65.4760 61.0030 0.6948 0.7701 TS172 101
102 TS129 61.6880 56.0610 0.5317 0.5388 62.8790 57.6840 0.5830 0.6148 TS129 102
103 AL285 61.6880 55.4110 0.5317 0.5084 61.6880 55.4110 0.5317 0.5084 AL285 103
104 TS045 61.4720 57.2150 0.5224 0.5928 61.4720 57.2150 0.5224 0.5928 TS045 104
105 TS408 61.4720 53.7520 0.5224 0.4307 64.8270 59.9210 0.6669 0.7194 TS408 105
106 TS026 61.3640 54.1490 0.5177 0.4493 61.3640 54.1490 0.5177 0.4493 TS026 106
107 TS174 61.2550 55.9880 0.5131 0.5354 61.2550 55.9880 0.5131 0.5354 TS174 107
108 TS424 60.8230 52.9580 0.4944 0.3936 64.1770 59.4880 0.6389 0.6992 TS424 108
109 TS253 60.7140 52.6330 0.4898 0.3784 60.7140 54.1130 0.4898 0.4476 TS253 109
110 AL396 60.4980 53.7880 0.4805 0.4324 60.4980 53.7880 0.4805 0.4324 AL396 110
111 TS391 60.2810 55.8080 0.4711 0.5270 60.2810 55.8080 0.4711 0.5270 TS391 111
112 TS244 60.2810 52.7780 0.4711 0.3852 63.9610 59.7040 0.6296 0.7093 TS244 112
113 TS117 59.8480 53.0660 0.4525 0.3986 59.9570 55.1590 0.4572 0.4966 TS117 113
114 TS189 56.8180 50.8300 0.3220 0.2940 56.8180 50.8300 0.3220 0.2940 TS189 114
115 TS297 56.7100 51.5510 0.3173 0.3277 58.3330 52.2010 0.3872 0.3582 TS297 115
116 TS173 55.8440 48.2680 0.2800 0.1741 66.8830 60.8950 0.7554 0.7650 TS173 116
117 TS461 55.5190 47.2580 0.2660 0.1268 56.8180 49.9640 0.3220 0.2535 TS461 117
118 TS228 55.1950 49.1340 0.2521 0.2146 58.9830 54.3650 0.4152 0.4594 TS228 118
119 TS450 51.9480 47.6910 0.1123 0.1471 51.9480 47.6910 0.1123 0.1471 TS450 119
120 TS250 39.1770 29.0760 -0.4377 -0.7241 58.6580 53.3910 0.4012 0.4138 TS250 120
121 TS248 28.8960 25.4330 -0.8805 -0.8946 28.8960 25.4330 -0.8805 -0.8946 TS248 121
122 TS083 28.3550 22.9080 -0.9038 -1.0127 28.3550 23.5210 -0.9038 -0.9841 TS083 122
123 TS042 12.8790 11.8690 -1.5702 -1.5294 13.3120 11.9770 -1.5516 -1.5243 TS042 123
124 TS200 12.7710 11.0390 -1.5749 -1.5682 16.6670 14.9350 -1.4071 -1.3859 TS200 124
125 TS207 12.4460 9.0550 -1.5889 -1.6611 16.2340 11.8330 -1.4257 -1.5310 TS207 125
126 TS373 10.8230 9.0910 -1.6588 -1.6594 11.6880 10.4620 -1.6215 -1.5952 TS373 126
127 TS484 10.7140 9.7040 -1.6635 -1.6307 66.5580 61.2550 0.7414 0.7819 TS484 127
128 TS316 10.6060 9.6680 -1.6681 -1.6324 13.3120 11.5800 -1.5516 -1.5429 TS316 128
129 TS182 10.4980 8.2610 -1.6728 -1.6982 12.1210 9.8120 -1.6029 -1.6256 TS182 129
130 TS355 10.2810 9.4160 -1.6821 -1.6442 11.6880 10.1010 -1.6215 -1.6121 TS355 130
131 TS333 10.2810 8.9830 -1.6821 -1.6644 34.0910 32.7920 -0.6567 -0.5502 TS333 131
132 TS084 10.1730 9.0190 -1.6868 -1.6627 11.7970 10.2810 -1.6168 -1.6037 TS084 132
133 TS257 10.0650 8.3330 -1.6914 -1.6948 12.1210 10.2810 -1.6029 -1.6037 TS257 133
134 RANDOM 9.77 8.26 -1.7041 -1.6983 9.77 8.26 -1.7041 -1.6983 RANDOM 134
135 TS206 9.3070 8.5140 -1.7241 -1.6864 9.3070 8.5140 -1.7241 -1.6864 TS206 135
136 TS304 9.3070 8.0090 -1.7241 -1.7100 12.1210 10.3900 -1.6029 -1.5986 TS304 136
137 TS350 9.0910 8.2250 -1.7334 -1.6999 12.0130 10.3900 -1.6075 -1.5986 TS350 137
138 TS229 8.8740 7.3590 -1.7427 -1.7404 10.8230 10.1010 -1.6588 -1.6121 TS229 138
139 TS289 8.7660 7.1070 -1.7473 -1.7522 8.7660 7.1070 -1.7473 -1.7522 TS289 139
140 TS264 8.6580 7.7560 -1.7520 -1.7218 10.4980 9.9210 -1.6728 -1.6205 TS264 140
141 TS029 8.5500 7.8280 -1.7567 -1.7185 9.5240 7.8280 -1.7147 -1.7185 TS029 141
142 TS336 8.0090 7.4310 -1.7799 -1.7371 8.4420 7.4310 -1.7613 -1.7371 TS336 142
143 TS218 7.7920 7.0710 -1.7893 -1.7539 7.7920 7.0710 -1.7893 -1.7539 TS218 143
144 TS009             -1.7041 -1.6983             -1.7041 -1.6983 TS009 144
145 TS014             -1.7041 -1.6983             -1.7041 -1.6983 TS014 145
146 TS020             -1.7041 -1.6983             -1.7041 -1.6983 TS020 146
147 TS039             -1.7041 -1.6983             -1.7041 -1.6983 TS039 147
148 TS044             -1.7041 -1.6983             -1.7041 -1.6983 TS044 148
149 TS060             -1.7041 -1.6983             -1.7041 -1.6983 TS060 149
150 TS074             -1.7041 -1.6983             -1.7041 -1.6983 TS074 150
151 TS075             -1.7041 -1.6983             -1.7041 -1.6983 TS075 151
152 TS086             -1.7041 -1.6983             -1.7041 -1.6983 TS086 152
153 TS140             -1.7041 -1.6983             -1.7041 -1.6983 TS140 153
154 TS150             -1.7041 -1.6983             -1.7041 -1.6983 TS150 154
155 TS152             -1.7041 -1.6983             -1.7041 -1.6983 TS152 155
156 TS153             -1.7041 -1.6983             -1.7041 -1.6983 TS153 156
157 TS154             -1.7041 -1.6983             -1.7041 -1.6983 TS154 157
158 TS160             -1.7041 -1.6983             -1.7041 -1.6983 TS160 158
159 TS170             -1.7041 -1.6983             -1.7041 -1.6983 TS170 159
160 TS178             -1.7041 -1.6983             -1.7041 -1.6983 TS178 160
161 TS180             -1.7041 -1.6983             -1.7041 -1.6983 TS180 161
162 TS184             -1.7041 -1.6983             -1.7041 -1.6983 TS184 162
163 TS254             -1.7041 -1.6983             -1.7041 -1.6983 TS254 163
164 TS261             -1.7041 -1.6983             -1.7041 -1.6983 TS261 164
165 TS263             -1.7041 -1.6983             -1.7041 -1.6983 TS263 165
166 TS269             -1.7041 -1.6983             -1.7041 -1.6983 TS269 166
167 TS279             -1.7041 -1.6983             -1.7041 -1.6983 TS279 167
168 TS282             -1.7041 -1.6983             -1.7041 -1.6983 TS282 168
169 TS301             -1.7041 -1.6983             -1.7041 -1.6983 TS301 169
170 TS322             -1.7041 -1.6983             -1.7041 -1.6983 TS322 170
171 TS330             -1.7041 -1.6983             -1.7041 -1.6983 TS330 171
172 TS331             -1.7041 -1.6983             -1.7041 -1.6983 TS331 172
173 TS347             -1.7041 -1.6983             -1.7041 -1.6983 TS347 173
174 TS358             -1.7041 -1.6983             -1.7041 -1.6983 TS358 174
175 TS362             -1.7041 -1.6983             -1.7041 -1.6983 TS362 175
176 TS433             -1.7041 -1.6983             -1.7041 -1.6983 TS433 176
177 TS439             -1.7041 -1.6983             -1.7041 -1.6983 TS439 177
178 TS444             -1.7041 -1.6983             -1.7041 -1.6983 TS444 178