| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG3854 |
All predicted COG clusters |
|---|---|---|---|
| 1g003687m | 803 | hhsearch probability: 96.94 Identity: 25% subject length: 308 Length of aligned reigon: 110 Coverage over query: 503-630 Coverage over subject: 136-258 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g003088m | 849 | hhsearch probability: 97.85 Identity: 22% subject length: 308 Length of aligned reigon: 90 Coverage over query: 302-394 Coverage over subject: 128-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g047214m | 658 | hhsearch probability: 94.58 Identity: 18% subject length: 308 Length of aligned reigon: 106 Coverage over query: 52-162 Coverage over subject: 137-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g007957m | 583 | hhsearch probability: 98.07 Identity: 27% subject length: 308 Length of aligned reigon: 113 Coverage over query: 205-344 Coverage over subject: 134-257 |
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1750, Archaeal serine proteases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3480, SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g035646m | 584 | hhsearch probability: 94.05 Identity: 16% subject length: 308 Length of aligned reigon: 109 Coverage over query: 199-318 Coverage over subject: 138-253 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4240, Predicted kinase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g042307m | 1314 | hhsearch probability: 91.80 Identity: 19% subject length: 308 Length of aligned reigon: 110 Coverage over query: 2-116 Coverage over subject: 140-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4240, Predicted kinase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g003681m | 803 | hhsearch probability: 96.95 Identity: 26% subject length: 308 Length of aligned reigon: 106 Coverage over query: 506-630 Coverage over subject: 140-258 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g047309m | 218 | hhsearch probability: 97.11 Identity: 16% subject length: 308 Length of aligned reigon: 117 Coverage over query: 51-177 Coverage over subject: 139-260 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3903, Predicted ATPase [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g000780m | 1288 | hhsearch probability: 91.61 Identity: 16% subject length: 308 Length of aligned reigon: 111 Coverage over query: 211-330 Coverage over subject: 136-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG3910, Predicted ATPase [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g042327m | 911 | hhsearch probability: 92.87 Identity: 20% subject length: 308 Length of aligned reigon: 123 Coverage over query: 166-298 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g002090m | 968 | hhsearch probability: 97.04 Identity: 26% subject length: 308 Length of aligned reigon: 106 Coverage over query: 671-795 Coverage over subject: 140-258 |
COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g012000m | 473 | hhsearch probability: 95.69 Identity: 36% subject length: 308 Length of aligned reigon: 25 Coverage over query: 249-273 Coverage over subject: 137-161 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1855, ATPase (PilT family) [General function prediction only] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g001405m | 1083 | hhsearch probability: 96.97 Identity: 24% subject length: 308 Length of aligned reigon: 112 Coverage over query: 792-922 Coverage over subject: 136-260 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3910, Predicted ATPase [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g044535m | 1085 | hhsearch probability: 92.21 Identity: 17% subject length: 308 Length of aligned reigon: 109 Coverage over query: 195-314 Coverage over subject: 138-253 |
COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g048789m | 724 | hhsearch probability: 93.03 Identity: 23% subject length: 308 Length of aligned reigon: 119 Coverage over query: 166-300 Coverage over subject: 128-257 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3903, Predicted ATPase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g018957m | 348 | hhsearch probability: 92.30 Identity: 25% subject length: 308 Length of aligned reigon: 24 Coverage over query: 229-252 Coverage over subject: 140-163 |
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG1158, Rho Transcription termination factor [Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g003192m | 840 | hhsearch probability: 93.82 Identity: 20% subject length: 308 Length of aligned reigon: 120 Coverage over query: 96-222 Coverage over subject: 128-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g038494m | 1209 | hhsearch probability: 90.76 Identity: 20% subject length: 308 Length of aligned reigon: 117 Coverage over query: 171-307 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g019334m | 342 | hhsearch probability: 96.56 Identity: 18% subject length: 308 Length of aligned reigon: 72 Coverage over query: 72-147 Coverage over subject: 135-227 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] |
| 1g048597m | 294 | hhsearch probability: 95.91 Identity: 27% subject length: 308 Length of aligned reigon: 30 Coverage over query: 90-121 Coverage over subject: 128-157 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g038882m | 347 | hhsearch probability: 95.66 Identity: 17% subject length: 308 Length of aligned reigon: 116 Coverage over query: 169-299 Coverage over subject: 128-254 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG3910, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g041971m | 1044 | hhsearch probability: 91.64 Identity: 24% subject length: 308 Length of aligned reigon: 37 Coverage over query: 51-87 Coverage over subject: 139-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3911, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1855, ATPase (PilT family) [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g002012m | 982 | hhsearch probability: 98.15 Identity: 24% subject length: 308 Length of aligned reigon: 115 Coverage over query: 281-410 Coverage over subject: 128-255 |
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g002655m | 896 | hhsearch probability: 93.21 Identity: 19% subject length: 308 Length of aligned reigon: 120 Coverage over query: 169-301 Coverage over subject: 128-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g000635m | 1380 | hhsearch probability: 91.98 Identity: 18% subject length: 308 Length of aligned reigon: 120 Coverage over query: 167-296 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g046470m | 888 | hhsearch probability: 93.75 Identity: 21% subject length: 308 Length of aligned reigon: 116 Coverage over query: 167-294 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] |
| 1g043119m | 792 | hhsearch probability: 96.71 Identity: 21% subject length: 308 Length of aligned reigon: 106 Coverage over query: 552-672 Coverage over subject: 136-257 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG3910, Predicted ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4637, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g000943m | 1214 | hhsearch probability: 91.07 Identity: 18% subject length: 308 Length of aligned reigon: 111 Coverage over query: 213-333 Coverage over subject: 136-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g003203m | 839 | hhsearch probability: 94.55 Identity: 17% subject length: 308 Length of aligned reigon: 124 Coverage over query: 47-175 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG4240, Predicted kinase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3910, Predicted ATPase [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g046258m | 900 | hhsearch probability: 98.09 Identity: 21% subject length: 308 Length of aligned reigon: 111 Coverage over query: 191-316 Coverage over subject: 128-251 |
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g047103m | 1095 | hhsearch probability: 91.40 Identity: 17% subject length: 308 Length of aligned reigon: 112 Coverage over query: 195-314 Coverage over subject: 135-251 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g001897m | 998 | hhsearch probability: 92.10 Identity: 21% subject length: 308 Length of aligned reigon: 117 Coverage over query: 167-297 Coverage over subject: 128-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g003802m | 794 | hhsearch probability: 94.63 Identity: 20% subject length: 308 Length of aligned reigon: 110 Coverage over query: 16-134 Coverage over subject: 138-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g007339m | 607 | hhsearch probability: 95.11 Identity: 22% subject length: 308 Length of aligned reigon: 103 Coverage over query: 8-122 Coverage over subject: 140-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g046888m | 1170 | hhsearch probability: 91.77 Identity: 18% subject length: 308 Length of aligned reigon: 108 Coverage over query: 209-325 Coverage over subject: 138-251 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] |
| 1g048831m | 1051 | hhsearch probability: 93.17 Identity: 16% subject length: 308 Length of aligned reigon: 113 Coverage over query: 49-171 Coverage over subject: 138-255 |
COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] |
| 1g038105m | 791 | hhsearch probability: 95.11 Identity: 19% subject length: 308 Length of aligned reigon: 123 Coverage over query: 61-196 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] |
| 1g000679m | 1355 | hhsearch probability: 91.39 Identity: 18% subject length: 308 Length of aligned reigon: 119 Coverage over query: 168-305 Coverage over subject: 128-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g002754m | 884 | hhsearch probability: 97.00 Identity: 24% subject length: 308 Length of aligned reigon: 68 Coverage over query: 454-521 Coverage over subject: 140-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g020787m | 321 | hhsearch probability: 96.26 Identity: 18% subject length: 308 Length of aligned reigon: 68 Coverage over query: 56-127 Coverage over subject: 140-228 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g043737m | 371 | hhsearch probability: 96.03 Identity: 19% subject length: 308 Length of aligned reigon: 118 Coverage over query: 74-204 Coverage over subject: 128-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g003677m | 804 | hhsearch probability: 97.02 Identity: 25% subject length: 308 Length of aligned reigon: 68 Coverage over query: 454-521 Coverage over subject: 140-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] |
| 1g003669m | 804 | hhsearch probability: 97.02 Identity: 25% subject length: 308 Length of aligned reigon: 68 Coverage over query: 454-521 Coverage over subject: 140-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] |
| 1g038454m | 359 | hhsearch probability: 95.39 Identity: 24% subject length: 308 Length of aligned reigon: 42 Coverage over query: 121-162 Coverage over subject: 128-169 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g046314m | 1137 | hhsearch probability: 92.67 Identity: 17% subject length: 308 Length of aligned reigon: 110 Coverage over query: 209-326 Coverage over subject: 138-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] |
| 1g002722m | 888 | hhsearch probability: 97.39 Identity: 22% subject length: 308 Length of aligned reigon: 114 Coverage over query: 655-787 Coverage over subject: 135-261 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g002306m | 938 | hhsearch probability: 97.26 Identity: 23% subject length: 308 Length of aligned reigon: 114 Coverage over query: 655-787 Coverage over subject: 135-261 |
COG0249, MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g003038m | 854 | hhsearch probability: 95.98 Identity: 14% subject length: 308 Length of aligned reigon: 99 Coverage over query: 659-760 Coverage over subject: 139-244 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g021239m | 315 | hhsearch probability: 97.58 Identity: 20% subject length: 308 Length of aligned reigon: 108 Coverage over query: 118-257 Coverage over subject: 134-253 |
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4544, Uncharacterized conserved protein [Function unknown] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g037222m | 904 | hhsearch probability: 93.37 Identity: 16% subject length: 308 Length of aligned reigon: 121 Coverage over query: 170-301 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0714, MoxR-like ATPases [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g000701m | 1344 | hhsearch probability: 92.29 Identity: 18% subject length: 308 Length of aligned reigon: 119 Coverage over query: 165-295 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4240, Predicted kinase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g036738m | 364 | hhsearch probability: 96.92 Identity: 18% subject length: 308 Length of aligned reigon: 112 Coverage over query: 211-333 Coverage over subject: 136-253 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g048652m | 1382 | hhsearch probability: 90.39 Identity: 22% subject length: 308 Length of aligned reigon: 37 Coverage over query: 273-309 Coverage over subject: 139-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3911, Predicted ATPase [General function prediction only] |
| 1g000790m | 1283 | hhsearch probability: 90.65 Identity: 32% subject length: 308 Length of aligned reigon: 25 Coverage over query: 594-618 Coverage over subject: 128-154 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g040638m | 419 | hhsearch probability: 96.98 Identity: 32% subject length: 308 Length of aligned reigon: 25 Coverage over query: 228-252 Coverage over subject: 139-163 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g001889m | 1000 | hhsearch probability: 92.53 Identity: 15% subject length: 308 Length of aligned reigon: 101 Coverage over query: 213-316 Coverage over subject: 137-251 |
COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g000704m | 1342 | hhsearch probability: 91.90 Identity: 20% subject length: 308 Length of aligned reigon: 121 Coverage over query: 151-281 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG4240, Predicted kinase [General function prediction only] |
| 1g041423m | 500 | hhsearch probability: 96.84 Identity: 42% subject length: 308 Length of aligned reigon: 24 Coverage over query: 246-269 Coverage over subject: 139-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g046483m | 228 | hhsearch probability: 91.49 Identity: 19% subject length: 308 Length of aligned reigon: 120 Coverage over query: 59-215 Coverage over subject: 136-260 |
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG2403, Predicted GTPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] COG1159, Era GTPase [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0218, Predicted GTPase [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3911, Predicted ATPase [General function prediction only] COG1160, Predicted GTPases [General function prediction only] COG0523, Putative GTPases (G3E family) [General function prediction only] |
| 1g041795m | 471 | hhsearch probability: 91.80 Identity: 33% subject length: 308 Length of aligned reigon: 27 Coverage over query: 208-234 Coverage over subject: 138-164 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g001979m | 987 | hhsearch probability: 94.09 Identity: 18% subject length: 308 Length of aligned reigon: 110 Coverage over query: 34-153 Coverage over subject: 138-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] |
| 1g046086m | 966 | hhsearch probability: 93.84 Identity: 14% subject length: 308 Length of aligned reigon: 111 Coverage over query: 155-274 Coverage over subject: 137-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g015919m | 398 | hhsearch probability: 90.32 Identity: 22% subject length: 308 Length of aligned reigon: 73 Coverage over query: 9-83 Coverage over subject: 103-180 |
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG3536, Uncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG3367, Uncharacterized conserved protein [Function unknown] COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] COG2403, Predicted GTPase [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4240, Predicted kinase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1159, Era GTPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2895, CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1160, Predicted GTPases [General function prediction only] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] |
| 1g015892m | 398 | hhsearch probability: 90.32 Identity: 22% subject length: 308 Length of aligned reigon: 73 Coverage over query: 9-83 Coverage over subject: 103-180 |
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG3536, Uncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG3367, Uncharacterized conserved protein [Function unknown] COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] COG2403, Predicted GTPase [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4240, Predicted kinase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1159, Era GTPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2895, CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1160, Predicted GTPases [General function prediction only] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] |
| 1g000874m | 1243 | hhsearch probability: 91.49 Identity: 16% subject length: 308 Length of aligned reigon: 111 Coverage over query: 209-327 Coverage over subject: 136-251 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g041248m | 813 | hhsearch probability: 93.42 Identity: 18% subject length: 308 Length of aligned reigon: 118 Coverage over query: 170-298 Coverage over subject: 128-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0714, MoxR-like ATPases [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g040354m | 172 | hhsearch probability: 97.16 Identity: 15% subject length: 308 Length of aligned reigon: 80 Coverage over query: 52-134 Coverage over subject: 138-252 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3903, Predicted ATPase [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] |
| 1g003231m | 837 | hhsearch probability: 96.85 Identity: 28% subject length: 308 Length of aligned reigon: 72 Coverage over query: 559-630 Coverage over subject: 137-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g019381m | 342 | hhsearch probability: 98.26 Identity: 17% subject length: 308 Length of aligned reigon: 159 Coverage over query: 121-321 Coverage over subject: 134-295 |
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g004875m | 726 | hhsearch probability: 90.07 Identity: 25% subject length: 308 Length of aligned reigon: 28 Coverage over query: 35-62 Coverage over subject: 128-157 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g045456m | 288 | hhsearch probability: 95.21 Identity: 36% subject length: 308 Length of aligned reigon: 25 Coverage over query: 246-270 Coverage over subject: 139-163 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0802, Predicted ATPase or kinase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4240, Predicted kinase [General function prediction only] |
| 1g013083m | 450 | hhsearch probability: 96.49 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 243-266 Coverage over subject: 138-161 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g012016m | 473 | hhsearch probability: 96.63 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 254-277 Coverage over subject: 138-161 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3378, Phage associated DNA primase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] |
| 1g011254m | 490 | hhsearch probability: 96.52 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 255-278 Coverage over subject: 139-162 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3378, Phage associated DNA primase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g003513m | 814 | hhsearch probability: 94.83 Identity: 19% subject length: 308 Length of aligned reigon: 118 Coverage over query: 82-207 Coverage over subject: 128-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g000802m | 1278 | hhsearch probability: 92.35 Identity: 19% subject length: 308 Length of aligned reigon: 110 Coverage over query: 210-329 Coverage over subject: 139-253 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] |
| 1g003859m | 791 | hhsearch probability: 97.21 Identity: 21% subject length: 308 Length of aligned reigon: 77 Coverage over query: 412-488 Coverage over subject: 136-229 |
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] |
| 1g044858m | 426 | hhsearch probability: 95.41 Identity: 24% subject length: 308 Length of aligned reigon: 119 Coverage over query: 163-291 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g001348m | 1094 | hhsearch probability: 92.81 Identity: 19% subject length: 308 Length of aligned reigon: 113 Coverage over query: 115-235 Coverage over subject: 137-254 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g000354m | 1622 | hhsearch probability: 90.00 Identity: 22% subject length: 308 Length of aligned reigon: 116 Coverage over query: 151-278 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g045458m | 1170 | hhsearch probability: 93.04 Identity: 18% subject length: 308 Length of aligned reigon: 112 Coverage over query: 52-173 Coverage over subject: 138-254 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4240, Predicted kinase [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] |
| 1g047388m | 352 | hhsearch probability: 98.00 Identity: 20% subject length: 308 Length of aligned reigon: 161 Coverage over query: 123-324 Coverage over subject: 133-296 |
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] |
| 1g000280m | 1728 | hhsearch probability: 91.85 Identity: 17% subject length: 308 Length of aligned reigon: 122 Coverage over query: 166-304 Coverage over subject: 126-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g038919m | 483 | hhsearch probability: 95.83 Identity: 16% subject length: 308 Length of aligned reigon: 107 Coverage over query: 168-286 Coverage over subject: 139-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] |
| 1g038724m | 483 | hhsearch probability: 95.41 Identity: 20% subject length: 308 Length of aligned reigon: 105 Coverage over query: 10-117 Coverage over subject: 128-256 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g022525m | 295 | hhsearch probability: 93.59 Identity: 33% subject length: 308 Length of aligned reigon: 33 Coverage over query: 38-70 Coverage over subject: 143-179 |
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG1159, Era GTPase [General function prediction only] COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1160, Predicted GTPases [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2403, Predicted GTPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG3367, Uncharacterized conserved protein [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG4240, Predicted kinase [General function prediction only] COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] COG1217, TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2895, CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0523, Putative GTPases (G3E family) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2229, Predicted GTPase [General function prediction only] COG5256, TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0532, InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g001457m | 1074 | hhsearch probability: 92.82 Identity: 21% subject length: 308 Length of aligned reigon: 114 Coverage over query: 172-299 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] |
| 1g003950m | 784 | hhsearch probability: 94.12 Identity: 13% subject length: 308 Length of aligned reigon: 119 Coverage over query: 149-275 Coverage over subject: 128-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g004686m | 737 | hhsearch probability: 95.58 Identity: 20% subject length: 308 Length of aligned reigon: 111 Coverage over query: 16-136 Coverage over subject: 138-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4240, Predicted kinase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3910, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g000518m | 1448 | hhsearch probability: 91.89 Identity: 20% subject length: 308 Length of aligned reigon: 121 Coverage over query: 151-281 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] |
| 1g011935m | 474 | hhsearch probability: 96.51 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 247-270 Coverage over subject: 138-161 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] |
| 1g039535m | 769 | hhsearch probability: 95.62 Identity: 21% subject length: 308 Length of aligned reigon: 117 Coverage over query: 33-162 Coverage over subject: 128-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3910, Predicted ATPase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g001603m | 1046 | hhsearch probability: 93.48 Identity: 18% subject length: 308 Length of aligned reigon: 107 Coverage over query: 2-119 Coverage over subject: 140-252 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4240, Predicted kinase [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG3910, Predicted ATPase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g036977m | 693 | hhsearch probability: 94.45 Identity: 17% subject length: 308 Length of aligned reigon: 120 Coverage over query: 170-307 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3910, Predicted ATPase [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g046970m | 420 | hhsearch probability: 96.01 Identity: 18% subject length: 308 Length of aligned reigon: 107 Coverage over query: 194-310 Coverage over subject: 139-253 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g000447m | 1497 | hhsearch probability: 91.20 Identity: 22% subject length: 308 Length of aligned reigon: 118 Coverage over query: 151-280 Coverage over subject: 128-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g002220m | 951 | hhsearch probability: 94.12 Identity: 17% subject length: 308 Length of aligned reigon: 111 Coverage over query: 210-328 Coverage over subject: 138-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g042728m | 486 | hhsearch probability: 95.14 Identity: 18% subject length: 308 Length of aligned reigon: 119 Coverage over query: 170-308 Coverage over subject: 128-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g007268m | 610 | hhsearch probability: 93.86 Identity: 26% subject length: 308 Length of aligned reigon: 115 Coverage over query: 166-292 Coverage over subject: 128-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4240, Predicted kinase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g044755m | 1079 | hhsearch probability: 93.06 Identity: 24% subject length: 308 Length of aligned reigon: 118 Coverage over query: 167-296 Coverage over subject: 128-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] |
| 1g011578m | 482 | hhsearch probability: 97.45 Identity: 20% subject length: 308 Length of aligned reigon: 112 Coverage over query: 242-368 Coverage over subject: 136-265 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0666, Arp FOG: Ankyrin repeat [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g002037m | 977 | hhsearch probability: 94.12 Identity: 20% subject length: 308 Length of aligned reigon: 119 Coverage over query: 83-210 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g009791m | 525 | hhsearch probability: 96.31 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 246-269 Coverage over subject: 139-162 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3378, Phage associated DNA primase [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0802, Predicted ATPase or kinase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g002299m | 940 | hhsearch probability: 94.40 Identity: 18% subject length: 308 Length of aligned reigon: 108 Coverage over query: 218-334 Coverage over subject: 140-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3910, Predicted ATPase [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] |
| 1g003070m | 850 | hhsearch probability: 92.93 Identity: 20% subject length: 308 Length of aligned reigon: 85 Coverage over query: 509-595 Coverage over subject: 135-244 |
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g007661m | 594 | hhsearch probability: 97.32 Identity: 38% subject length: 308 Length of aligned reigon: 26 Coverage over query: 254-279 Coverage over subject: 137-162 |
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g013316m | 445 | hhsearch probability: 97.52 Identity: 21% subject length: 308 Length of aligned reigon: 75 Coverage over query: 204-278 Coverage over subject: 135-227 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0666, Arp FOG: Ankyrin repeat [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g001746m | 1018 | hhsearch probability: 96.05 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 765-835 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g020071m | 331 | hhsearch probability: 97.01 Identity: 36% subject length: 308 Length of aligned reigon: 28 Coverage over query: 44-71 Coverage over subject: 135-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1485, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] |
| 1g035585m | 183 | hhsearch probability: 97.94 Identity: 19% subject length: 308 Length of aligned reigon: 122 Coverage over query: 38-168 Coverage over subject: 128-257 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g037859m | 504 | hhsearch probability: 96.32 Identity: 36% subject length: 308 Length of aligned reigon: 25 Coverage over query: 227-251 Coverage over subject: 138-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0802, Predicted ATPase or kinase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g047607m | 352 | hhsearch probability: 95.81 Identity: 15% subject length: 308 Length of aligned reigon: 123 Coverage over query: 166-302 Coverage over subject: 128-259 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g011573m | 482 | hhsearch probability: 96.37 Identity: 40% subject length: 308 Length of aligned reigon: 25 Coverage over query: 235-259 Coverage over subject: 138-162 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3378, Phage associated DNA primase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g041843m | 800 | hhsearch probability: 95.31 Identity: 19% subject length: 308 Length of aligned reigon: 119 Coverage over query: 74-200 Coverage over subject: 128-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0714, MoxR-like ATPases [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4240, Predicted kinase [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g002458m | 919 | hhsearch probability: 94.30 Identity: 18% subject length: 308 Length of aligned reigon: 109 Coverage over query: 16-134 Coverage over subject: 138-252 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g011374m | 487 | hhsearch probability: 96.74 Identity: 36% subject length: 308 Length of aligned reigon: 25 Coverage over query: 249-273 Coverage over subject: 138-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] |
| 1g014665m | 420 | hhsearch probability: 97.71 Identity: 24% subject length: 308 Length of aligned reigon: 70 Coverage over query: 203-272 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g014712m | 420 | hhsearch probability: 97.71 Identity: 24% subject length: 308 Length of aligned reigon: 70 Coverage over query: 203-272 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g002939m | 864 | hhsearch probability: 94.93 Identity: 19% subject length: 308 Length of aligned reigon: 124 Coverage over query: 7-148 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3910, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g037814m | 229 | hhsearch probability: 92.69 Identity: 26% subject length: 308 Length of aligned reigon: 38 Coverage over query: 178-224 Coverage over subject: 120-157 |
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1162, Predicted GTPases [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4240, Predicted kinase [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0802, Predicted ATPase or kinase [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG1084, Predicted GTPase [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1855, ATPase (PilT family) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] |
| 1g010133m | 517 | hhsearch probability: 96.60 Identity: 33% subject length: 308 Length of aligned reigon: 24 Coverage over query: 239-262 Coverage over subject: 139-162 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g011286m | 489 | hhsearch probability: 96.73 Identity: 36% subject length: 308 Length of aligned reigon: 25 Coverage over query: 249-273 Coverage over subject: 138-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] |
| 1g016800m | 382 | hhsearch probability: 96.99 Identity: 36% subject length: 308 Length of aligned reigon: 33 Coverage over query: 75-107 Coverage over subject: 130-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1485, Predicted ATPase [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g003253m | 836 | hhsearch probability: 96.85 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 570-640 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g007481m | 602 | hhsearch probability: 91.21 Identity: 19% subject length: 308 Length of aligned reigon: 114 Coverage over query: 29-179 Coverage over subject: 129-247 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g001707m | 1023 | hhsearch probability: 96.23 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 766-836 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g001735m | 1019 | hhsearch probability: 96.17 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 766-836 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g001161m | 1134 | hhsearch probability: 94.02 Identity: 17% subject length: 308 Length of aligned reigon: 111 Coverage over query: 216-334 Coverage over subject: 138-253 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g007575m | 597 | hhsearch probability: 96.79 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g003265m | 835 | hhsearch probability: 94.67 Identity: 18% subject length: 308 Length of aligned reigon: 125 Coverage over query: 106-241 Coverage over subject: 127-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g009072m | 544 | hhsearch probability: 97.08 Identity: 43% subject length: 308 Length of aligned reigon: 23 Coverage over query: 180-202 Coverage over subject: 139-161 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3899, Predicted ATPase [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g000630m | 1382 | hhsearch probability: 93.05 Identity: 18% subject length: 308 Length of aligned reigon: 107 Coverage over query: 207-330 Coverage over subject: 139-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g038510m | 871 | hhsearch probability: 92.65 Identity: 24% subject length: 308 Length of aligned reigon: 97 Coverage over query: 163-262 Coverage over subject: 128-255 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] |
| 1g037851m | 1053 | hhsearch probability: 94.00 Identity: 23% subject length: 308 Length of aligned reigon: 117 Coverage over query: 165-294 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1084, Predicted GTPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g005643m | 686 | hhsearch probability: 96.56 Identity: 23% subject length: 308 Length of aligned reigon: 71 Coverage over query: 204-274 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1485, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] |
| 1g005520m | 692 | hhsearch probability: 94.56 Identity: 22% subject length: 308 Length of aligned reigon: 27 Coverage over query: 115-141 Coverage over subject: 136-162 |
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1240, ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4245, TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3552, CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4548, NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2718, Uncharacterized conserved protein [Function unknown] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG3864, Uncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5148, RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4547, CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g008489m | 564 | hhsearch probability: 90.48 Identity: 33% subject length: 308 Length of aligned reigon: 18 Coverage over query: 77-94 Coverage over subject: 137-154 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g042739m | 505 | hhsearch probability: 95.45 Identity: 25% subject length: 308 Length of aligned reigon: 28 Coverage over query: 211-238 Coverage over subject: 137-164 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3910, Predicted ATPase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0802, Predicted ATPase or kinase [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g044627m | 524 | hhsearch probability: 95.03 Identity: 13% subject length: 308 Length of aligned reigon: 108 Coverage over query: 212-326 Coverage over subject: 139-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] |
| 1g009856m | 523 | hhsearch probability: 97.21 Identity: 46% subject length: 308 Length of aligned reigon: 26 Coverage over query: 274-299 Coverage over subject: 136-161 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g001326m | 1099 | hhsearch probability: 93.57 Identity: 18% subject length: 308 Length of aligned reigon: 112 Coverage over query: 54-173 Coverage over subject: 136-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g009640m | 530 | hhsearch probability: 96.52 Identity: 33% subject length: 308 Length of aligned reigon: 27 Coverage over query: 229-255 Coverage over subject: 138-164 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3378, Phage associated DNA primase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g001805m | 1011 | hhsearch probability: 93.89 Identity: 17% subject length: 308 Length of aligned reigon: 108 Coverage over query: 216-334 Coverage over subject: 138-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4240, Predicted kinase [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] |
| 1g041382m | 600 | hhsearch probability: 96.57 Identity: 35% subject length: 308 Length of aligned reigon: 23 Coverage over query: 221-243 Coverage over subject: 139-161 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g003619m | 807 | hhsearch probability: 96.62 Identity: 30% subject length: 308 Length of aligned reigon: 70 Coverage over query: 459-528 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] |
| 1g028600m | 207 | hhsearch probability: 95.06 Identity: 28% subject length: 308 Length of aligned reigon: 40 Coverage over query: 31-70 Coverage over subject: 136-179 |
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism] COG2403, Predicted GTPase [General function prediction only] COG1160, Predicted GTPases [General function prediction only] COG1159, Era GTPase [General function prediction only] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0523, Putative GTPases (G3E family) [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3367, Uncharacterized conserved protein [Function unknown] COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1217, TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0532, InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g007214m | 612 | hhsearch probability: 96.79 Identity: 24% subject length: 308 Length of aligned reigon: 71 Coverage over query: 203-273 Coverage over subject: 136-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g027390m | 224 | hhsearch probability: 99.68 Identity: 46% subject length: 308 Length of aligned reigon: 135 Coverage over query: 1-136 Coverage over subject: 128-267 |
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g027392m | 224 | hhsearch probability: 99.68 Identity: 46% subject length: 308 Length of aligned reigon: 135 Coverage over query: 1-136 Coverage over subject: 128-267 |
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g002241m | 948 | hhsearch probability: 96.33 Identity: 42% subject length: 308 Length of aligned reigon: 24 Coverage over query: 313-336 Coverage over subject: 139-162 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] |
| 1g000950m | 1211 | hhsearch probability: 95.95 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 945-1015 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g017884m | 364 | hhsearch probability: 97.13 Identity: 31% subject length: 308 Length of aligned reigon: 35 Coverage over query: 65-99 Coverage over subject: 128-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1485, Predicted ATPase [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3910, Predicted ATPase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g003388m | 824 | hhsearch probability: 91.35 Identity: 38% subject length: 308 Length of aligned reigon: 21 Coverage over query: 275-295 Coverage over subject: 140-160 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3911, Predicted ATPase [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g001066m | 1167 | hhsearch probability: 96.90 Identity: 21% subject length: 308 Length of aligned reigon: 78 Coverage over query: 720-797 Coverage over subject: 137-231 |
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5141, PHD zinc finger-containing protein [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g016151m | 394 | hhsearch probability: 97.41 Identity: 20% subject length: 308 Length of aligned reigon: 108 Coverage over query: 119-257 Coverage over subject: 135-253 |
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4544, Uncharacterized conserved protein [Function unknown] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] |
| 1g037337m | 247 | hhsearch probability: 96.90 Identity: 19% subject length: 308 Length of aligned reigon: 120 Coverage over query: 106-234 Coverage over subject: 128-255 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3899, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g001277m | 1109 | hhsearch probability: 93.86 Identity: 18% subject length: 308 Length of aligned reigon: 111 Coverage over query: 208-328 Coverage over subject: 137-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g005285m | 704 | hhsearch probability: 96.70 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 204-273 Coverage over subject: 137-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g005284m | 704 | hhsearch probability: 96.70 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 204-273 Coverage over subject: 137-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g004121m | 772 | hhsearch probability: 92.08 Identity: 27% subject length: 308 Length of aligned reigon: 37 Coverage over query: 408-444 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3911, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g013128m | 449 | hhsearch probability: 97.00 Identity: 21% subject length: 308 Length of aligned reigon: 63 Coverage over query: 244-306 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3378, Phage associated DNA primase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g001862m | 1002 | hhsearch probability: 96.27 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 736-806 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] |
| 1g037332m | 1007 | hhsearch probability: 94.78 Identity: 18% subject length: 308 Length of aligned reigon: 113 Coverage over query: 217-337 Coverage over subject: 138-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g007362m | 606 | hhsearch probability: 95.89 Identity: 21% subject length: 308 Length of aligned reigon: 77 Coverage over query: 326-402 Coverage over subject: 138-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] |
| 1g041476m | 397 | hhsearch probability: 95.99 Identity: 19% subject length: 308 Length of aligned reigon: 119 Coverage over query: 166-297 Coverage over subject: 128-258 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g002863m | 873 | hhsearch probability: 94.99 Identity: 18% subject length: 308 Length of aligned reigon: 124 Coverage over query: 156-290 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] |
| 1g013706m | 438 | hhsearch probability: 98.01 Identity: 21% subject length: 308 Length of aligned reigon: 111 Coverage over query: 197-323 Coverage over subject: 135-264 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0666, Arp FOG: Ankyrin repeat [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g001718m | 1021 | hhsearch probability: 90.35 Identity: 27% subject length: 308 Length of aligned reigon: 37 Coverage over query: 408-444 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g009411m | 535 | hhsearch probability: 95.08 Identity: 21% subject length: 308 Length of aligned reigon: 118 Coverage over query: 161-286 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4240, Predicted kinase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g039127m | 162 | hhsearch probability: 96.43 Identity: 18% subject length: 308 Length of aligned reigon: 40 Coverage over query: 26-72 Coverage over subject: 117-161 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3903, Predicted ATPase [General function prediction only] |
| 1g002307m | 938 | hhsearch probability: 96.78 Identity: 29% subject length: 308 Length of aligned reigon: 69 Coverage over query: 460-528 Coverage over subject: 139-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g002852m | 874 | hhsearch probability: 92.69 Identity: 23% subject length: 308 Length of aligned reigon: 39 Coverage over query: 411-450 Coverage over subject: 140-182 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g002849m | 874 | hhsearch probability: 92.69 Identity: 23% subject length: 308 Length of aligned reigon: 39 Coverage over query: 411-450 Coverage over subject: 140-182 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g002841m | 874 | hhsearch probability: 92.69 Identity: 23% subject length: 308 Length of aligned reigon: 39 Coverage over query: 411-450 Coverage over subject: 140-182 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3911, Predicted ATPase [General function prediction only] |
| 1g021959m | 305 | hhsearch probability: 97.68 Identity: 35% subject length: 308 Length of aligned reigon: 31 Coverage over query: 69-99 Coverage over subject: 132-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g038509m | 806 | hhsearch probability: 92.58 Identity: 23% subject length: 308 Length of aligned reigon: 39 Coverage over query: 421-460 Coverage over subject: 140-182 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3911, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] |
| 1g003175m | 842 | hhsearch probability: 96.99 Identity: 22% subject length: 308 Length of aligned reigon: 41 Coverage over query: 487-529 Coverage over subject: 137-177 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5141, PHD zinc finger-containing protein [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] |
| 1g009306m | 538 | hhsearch probability: 95.86 Identity: 15% subject length: 308 Length of aligned reigon: 108 Coverage over query: 214-330 Coverage over subject: 140-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g021937m | 305 | hhsearch probability: 97.68 Identity: 35% subject length: 308 Length of aligned reigon: 31 Coverage over query: 69-99 Coverage over subject: 132-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g004770m | 731 | hhsearch probability: 96.91 Identity: 21% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] |
| 1g000858m | 1251 | hhsearch probability: 96.12 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 985-1055 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g024550m | 266 | hhsearch probability: 97.58 Identity: 38% subject length: 308 Length of aligned reigon: 24 Coverage over query: 32-55 Coverage over subject: 138-161 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g001309m | 1103 | hhsearch probability: 96.12 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 837-907 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1485, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g044297m | 440 | hhsearch probability: 97.02 Identity: 24% subject length: 308 Length of aligned reigon: 87 Coverage over query: 179-279 Coverage over subject: 139-255 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0802, Predicted ATPase or kinase [General function prediction only] |
| 1g035561m | 979 | hhsearch probability: 96.54 Identity: 24% subject length: 308 Length of aligned reigon: 70 Coverage over query: 489-558 Coverage over subject: 138-228 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g038205m | 375 | hhsearch probability: 96.58 Identity: 18% subject length: 308 Length of aligned reigon: 126 Coverage over query: 134-268 Coverage over subject: 128-259 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g038826m | 572 | hhsearch probability: 94.48 Identity: 13% subject length: 308 Length of aligned reigon: 108 Coverage over query: 212-325 Coverage over subject: 139-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g037483m | 693 | hhsearch probability: 95.06 Identity: 23% subject length: 308 Length of aligned reigon: 79 Coverage over query: 42-123 Coverage over subject: 138-254 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g006254m | 653 | hhsearch probability: 95.69 Identity: 22% subject length: 308 Length of aligned reigon: 27 Coverage over query: 115-141 Coverage over subject: 136-162 |
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1240, ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4245, TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3552, CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2718, Uncharacterized conserved protein [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1084, Predicted GTPase [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5148, RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g037424m | 231 | hhsearch probability: 96.42 Identity: 11% subject length: 308 Length of aligned reigon: 28 Coverage over query: 196-223 Coverage over subject: 135-163 |
COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g001227m | 1119 | hhsearch probability: 96.17 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 853-923 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g001501m | 1066 | hhsearch probability: 90.09 Identity: 27% subject length: 308 Length of aligned reigon: 37 Coverage over query: 408-444 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g006018m | 664 | hhsearch probability: 94.95 Identity: 18% subject length: 308 Length of aligned reigon: 94 Coverage over query: 184-280 Coverage over subject: 139-251 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g005191m | 709 | hhsearch probability: 93.66 Identity: 18% subject length: 308 Length of aligned reigon: 108 Coverage over query: 206-323 Coverage over subject: 138-252 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g026258m | 241 | hhsearch probability: 98.37 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 67-137 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] |
| 1g045677m | 352 | hhsearch probability: 96.89 Identity: 19% subject length: 308 Length of aligned reigon: 101 Coverage over query: 35-151 Coverage over subject: 140-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g001150m | 1138 | hhsearch probability: 96.67 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 937-1007 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g012719m | 458 | hhsearch probability: 97.06 Identity: 19% subject length: 308 Length of aligned reigon: 72 Coverage over query: 68-139 Coverage over subject: 139-228 |
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3899, Predicted ATPase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g000818m | 1268 | hhsearch probability: 95.22 Identity: 21% subject length: 308 Length of aligned reigon: 94 Coverage over query: 494-614 Coverage over subject: 138-251 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3899, Predicted ATPase [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1485, Predicted ATPase [General function prediction only] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] |
| 1g003473m | 817 | hhsearch probability: 96.84 Identity: 23% subject length: 308 Length of aligned reigon: 71 Coverage over query: 366-436 Coverage over subject: 137-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] |
| 1g035774m | 357 | hhsearch probability: 97.56 Identity: 19% subject length: 308 Length of aligned reigon: 121 Coverage over query: 99-257 Coverage over subject: 133-254 |
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g042645m | 427 | hhsearch probability: 96.05 Identity: 17% subject length: 308 Length of aligned reigon: 125 Coverage over query: 160-295 Coverage over subject: 128-259 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4240, Predicted kinase [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1158, Rho Transcription termination factor [Transcription] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g000978m | 1203 | hhsearch probability: 96.58 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 937-1007 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] |
| 1g000914m | 1226 | hhsearch probability: 96.25 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 960-1030 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g010366m | 512 | hhsearch probability: 97.34 Identity: 48% subject length: 308 Length of aligned reigon: 23 Coverage over query: 270-292 Coverage over subject: 139-161 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g037717m | 582 | hhsearch probability: 93.69 Identity: 38% subject length: 308 Length of aligned reigon: 16 Coverage over query: 82-97 Coverage over subject: 139-154 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g021660m | 309 | hhsearch probability: 97.77 Identity: 31% subject length: 308 Length of aligned reigon: 36 Coverage over query: 65-100 Coverage over subject: 128-163 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1485, Predicted ATPase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3378, Phage associated DNA primase [General function prediction only] |
| 1g000925m | 1222 | hhsearch probability: 96.14 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 956-1026 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g014798m | 418 | hhsearch probability: 97.36 Identity: 25% subject length: 308 Length of aligned reigon: 91 Coverage over query: 266-377 Coverage over subject: 139-251 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g011664m | 480 | hhsearch probability: 97.02 Identity: 23% subject length: 308 Length of aligned reigon: 62 Coverage over query: 226-287 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g012326m | 466 | hhsearch probability: 96.91 Identity: 33% subject length: 308 Length of aligned reigon: 27 Coverage over query: 67-93 Coverage over subject: 138-164 |
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] |
| 1g001031m | 1183 | hhsearch probability: 96.24 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 985-1055 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g008610m | 559 | hhsearch probability: 91.20 Identity: 21% subject length: 308 Length of aligned reigon: 39 Coverage over query: 229-267 Coverage over subject: 140-180 |
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] COG1158, Rho Transcription termination factor [Transcription] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] |
| 1g014332m | 426 | hhsearch probability: 97.52 Identity: 24% subject length: 308 Length of aligned reigon: 72 Coverage over query: 202-273 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g001347m | 1095 | hhsearch probability: 90.38 Identity: 27% subject length: 308 Length of aligned reigon: 37 Coverage over query: 408-444 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g002024m | 979 | hhsearch probability: 95.58 Identity: 18% subject length: 308 Length of aligned reigon: 123 Coverage over query: 22-151 Coverage over subject: 128-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4240, Predicted kinase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g020206m | 329 | hhsearch probability: 96.83 Identity: 28% subject length: 308 Length of aligned reigon: 25 Coverage over query: 6-30 Coverage over subject: 140-164 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3910, Predicted ATPase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g003806m | 794 | hhsearch probability: 96.86 Identity: 21% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g004921m | 723 | hhsearch probability: 96.71 Identity: 26% subject length: 308 Length of aligned reigon: 70 Coverage over query: 304-373 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] |
| 1g010809m | 500 | hhsearch probability: 97.20 Identity: 27% subject length: 308 Length of aligned reigon: 70 Coverage over query: 265-334 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g007190m | 613 | hhsearch probability: 97.05 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 203-273 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g012383m | 465 | hhsearch probability: 96.90 Identity: 15% subject length: 308 Length of aligned reigon: 72 Coverage over query: 150-221 Coverage over subject: 138-227 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] |
| 1g015875m | 399 | hhsearch probability: 97.54 Identity: 24% subject length: 308 Length of aligned reigon: 72 Coverage over query: 175-246 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] |
| 1g000888m | 1237 | hhsearch probability: 96.51 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 971-1041 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g045887m | 382 | hhsearch probability: 95.76 Identity: 24% subject length: 308 Length of aligned reigon: 42 Coverage over query: 144-185 Coverage over subject: 128-169 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g004009m | 779 | hhsearch probability: 92.68 Identity: 27% subject length: 308 Length of aligned reigon: 37 Coverage over query: 408-444 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3911, Predicted ATPase [General function prediction only] |
| 1g006458m | 644 | hhsearch probability: 97.36 Identity: 23% subject length: 308 Length of aligned reigon: 73 Coverage over query: 399-471 Coverage over subject: 136-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g012418m | 464 | hhsearch probability: 96.74 Identity: 21% subject length: 308 Length of aligned reigon: 24 Coverage over query: 160-183 Coverage over subject: 138-161 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] |
| 1g002972m | 862 | hhsearch probability: 93.21 Identity: 15% subject length: 308 Length of aligned reigon: 117 Coverage over query: 180-314 Coverage over subject: 137-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g011983m | 473 | hhsearch probability: 96.99 Identity: 13% subject length: 308 Length of aligned reigon: 75 Coverage over query: 156-230 Coverage over subject: 136-228 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0645, Predicted kinase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] |
| 1g001861m | 1002 | hhsearch probability: 96.44 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 736-806 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g001076m | 1163 | hhsearch probability: 96.33 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 985-1055 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g009845m | 524 | hhsearch probability: 96.20 Identity: 21% subject length: 308 Length of aligned reigon: 109 Coverage over query: 213-329 Coverage over subject: 140-253 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g037625m | 467 | hhsearch probability: 96.29 Identity: 21% subject length: 308 Length of aligned reigon: 120 Coverage over query: 147-279 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g030973m | 168 | hhsearch probability: 94.58 Identity: 30% subject length: 308 Length of aligned reigon: 37 Coverage over query: 35-71 Coverage over subject: 140-180 |
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2403, Predicted GTPase [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4240, Predicted kinase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism] COG5623, CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG3911, Predicted ATPase [General function prediction only] COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0523, Putative GTPases (G3E family) [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0645, Predicted kinase [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1159, Era GTPase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0771, MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1160, Predicted GTPases [General function prediction only] |
| 1g000823m | 1267 | hhsearch probability: 96.59 Identity: 28% subject length: 308 Length of aligned reigon: 71 Coverage over query: 971-1041 Coverage over subject: 138-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g002125m | 963 | hhsearch probability: 94.74 Identity: 17% subject length: 308 Length of aligned reigon: 108 Coverage over query: 220-332 Coverage over subject: 137-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3910, Predicted ATPase [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g021192m | 316 | hhsearch probability: 96.93 Identity: 25% subject length: 308 Length of aligned reigon: 72 Coverage over query: 242-314 Coverage over subject: 136-223 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0666, Arp FOG: Ankyrin repeat [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0802, Predicted ATPase or kinase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0645, Predicted kinase [General function prediction only] |
| 1g037291m | 349 | hhsearch probability: 96.46 Identity: 14% subject length: 308 Length of aligned reigon: 115 Coverage over query: 168-290 Coverage over subject: 136-255 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g035937m | 82 | hhsearch probability: 97.83 Identity: 14% subject length: 308 Length of aligned reigon: 78 Coverage over query: 1-80 Coverage over subject: 141-237 |
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0645, Predicted kinase [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3911, Predicted ATPase [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG4639, Predicted kinase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g017204m | 375 | hhsearch probability: 97.24 Identity: 14% subject length: 308 Length of aligned reigon: 71 Coverage over query: 61-131 Coverage over subject: 139-227 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0645, Predicted kinase [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g047029m | 455 | hhsearch probability: 97.26 Identity: 35% subject length: 308 Length of aligned reigon: 26 Coverage over query: 241-266 Coverage over subject: 137-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1855, ATPase (PilT family) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g005304m | 703 | hhsearch probability: 97.00 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 266-335 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g047690m | 811 | hhsearch probability: 96.90 Identity: 28% subject length: 308 Length of aligned reigon: 69 Coverage over query: 361-429 Coverage over subject: 139-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g002569m | 906 | hhsearch probability: 94.80 Identity: 19% subject length: 308 Length of aligned reigon: 119 Coverage over query: 171-296 Coverage over subject: 128-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4240, Predicted kinase [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g006700m | 635 | hhsearch probability: 97.31 Identity: 48% subject length: 308 Length of aligned reigon: 25 Coverage over query: 388-412 Coverage over subject: 138-162 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g006534m | 641 | hhsearch probability: 97.07 Identity: 23% subject length: 308 Length of aligned reigon: 69 Coverage over query: 367-435 Coverage over subject: 139-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g043051m | 845 | hhsearch probability: 96.93 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 340-410 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] |
| 1g005815m | 676 | hhsearch probability: 97.24 Identity: 27% subject length: 308 Length of aligned reigon: 70 Coverage over query: 249-318 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] |
| 1g011914m | 475 | hhsearch probability: 96.99 Identity: 15% subject length: 308 Length of aligned reigon: 74 Coverage over query: 159-232 Coverage over subject: 137-228 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g007989m | 582 | hhsearch probability: 97.16 Identity: 28% subject length: 308 Length of aligned reigon: 69 Coverage over query: 266-334 Coverage over subject: 139-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g039134m | 339 | hhsearch probability: 96.18 Identity: 18% subject length: 308 Length of aligned reigon: 102 Coverage over query: 48-150 Coverage over subject: 128-251 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g017161m | 376 | hhsearch probability: 97.80 Identity: 24% subject length: 308 Length of aligned reigon: 71 Coverage over query: 203-273 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] |
| 1g007367m | 606 | hhsearch probability: 97.07 Identity: 26% subject length: 308 Length of aligned reigon: 70 Coverage over query: 304-373 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g011568m | 483 | hhsearch probability: 95.81 Identity: 17% subject length: 308 Length of aligned reigon: 127 Coverage over query: 154-286 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g006535m | 641 | hhsearch probability: 97.08 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] |
| 1g007053m | 620 | hhsearch probability: 96.93 Identity: 24% subject length: 308 Length of aligned reigon: 72 Coverage over query: 328-399 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g019145m | 345 | hhsearch probability: 97.75 Identity: 37% subject length: 308 Length of aligned reigon: 35 Coverage over query: 73-107 Coverage over subject: 128-162 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] |
| 1g043805m | 555 | hhsearch probability: 95.76 Identity: 31% subject length: 308 Length of aligned reigon: 26 Coverage over query: 216-241 Coverage over subject: 139-164 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g007591m | 597 | hhsearch probability: 97.23 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g005003m | 720 | hhsearch probability: 97.05 Identity: 27% subject length: 308 Length of aligned reigon: 70 Coverage over query: 292-361 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g003476m | 816 | hhsearch probability: 96.93 Identity: 21% subject length: 308 Length of aligned reigon: 70 Coverage over query: 366-435 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g013704m | 438 | hhsearch probability: 97.12 Identity: 13% subject length: 308 Length of aligned reigon: 76 Coverage over query: 159-234 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g022641m | 294 | hhsearch probability: 98.04 Identity: 38% subject length: 308 Length of aligned reigon: 34 Coverage over query: 73-106 Coverage over subject: 128-161 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g003696m | 802 | hhsearch probability: 97.01 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 393-462 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] |
| 1g005479m | 694 | hhsearch probability: 97.05 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 266-335 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g005738m | 680 | hhsearch probability: 97.28 Identity: 26% subject length: 308 Length of aligned reigon: 70 Coverage over query: 226-295 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g005495m | 694 | hhsearch probability: 97.05 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 266-335 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g005480m | 694 | hhsearch probability: 97.05 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 266-335 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g041769m | 204 | hhsearch probability: 97.69 Identity: 24% subject length: 308 Length of aligned reigon: 34 Coverage over query: 39-72 Coverage over subject: 139-180 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g003807m | 794 | hhsearch probability: 96.98 Identity: 29% subject length: 308 Length of aligned reigon: 70 Coverage over query: 393-462 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] |
| 1g004916m | 724 | hhsearch probability: 96.97 Identity: 27% subject length: 308 Length of aligned reigon: 71 Coverage over query: 458-528 Coverage over subject: 138-230 |
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g011393m | 487 | hhsearch probability: 97.52 Identity: 25% subject length: 308 Length of aligned reigon: 73 Coverage over query: 248-320 Coverage over subject: 136-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g037173m | 617 | hhsearch probability: 95.41 Identity: 16% subject length: 308 Length of aligned reigon: 109 Coverage over query: 211-322 Coverage over subject: 139-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g001244m | 1116 | hhsearch probability: 96.89 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 985-1055 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1716, FOG: FHA domain [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g010136m | 517 | hhsearch probability: 97.19 Identity: 20% subject length: 308 Length of aligned reigon: 46 Coverage over query: 147-194 Coverage over subject: 135-180 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0802, Predicted ATPase or kinase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g005179m | 710 | hhsearch probability: 97.96 Identity: 21% subject length: 308 Length of aligned reigon: 91 Coverage over query: 301-394 Coverage over subject: 127-230 |
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3899, Predicted ATPase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] |
| 1g010355m | 512 | hhsearch probability: 96.06 Identity: 21% subject length: 308 Length of aligned reigon: 116 Coverage over query: 161-286 Coverage over subject: 128-254 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4240, Predicted kinase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g009974m | 521 | hhsearch probability: 97.43 Identity: 26% subject length: 308 Length of aligned reigon: 70 Coverage over query: 112-181 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1855, ATPase (PilT family) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g022768m | 292 | hhsearch probability: 98.11 Identity: 26% subject length: 308 Length of aligned reigon: 94 Coverage over query: 66-180 Coverage over subject: 137-252 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3899, Predicted ATPase [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g048213m | 532 | hhsearch probability: 95.41 Identity: 23% subject length: 308 Length of aligned reigon: 102 Coverage over query: 118-222 Coverage over subject: 128-255 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g008723m | 556 | hhsearch probability: 96.58 Identity: 22% subject length: 308 Length of aligned reigon: 78 Coverage over query: 325-402 Coverage over subject: 137-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g014243m | 428 | hhsearch probability: 97.15 Identity: 15% subject length: 308 Length of aligned reigon: 73 Coverage over query: 150-222 Coverage over subject: 138-228 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0645, Predicted kinase [General function prediction only] |
| 1g014244m | 428 | hhsearch probability: 97.15 Identity: 15% subject length: 308 Length of aligned reigon: 73 Coverage over query: 150-222 Coverage over subject: 138-228 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0645, Predicted kinase [General function prediction only] |
| 1g014246m | 428 | hhsearch probability: 97.15 Identity: 15% subject length: 308 Length of aligned reigon: 73 Coverage over query: 150-222 Coverage over subject: 138-228 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0645, Predicted kinase [General function prediction only] |
| 1g012671m | 458 | hhsearch probability: 96.06 Identity: 40% subject length: 308 Length of aligned reigon: 30 Coverage over query: 385-414 Coverage over subject: 135-164 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g048627m | 689 | hhsearch probability: 96.22 Identity: 18% subject length: 308 Length of aligned reigon: 110 Coverage over query: 87-202 Coverage over subject: 138-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g047219m | 567 | hhsearch probability: 97.07 Identity: 19% subject length: 308 Length of aligned reigon: 80 Coverage over query: 320-400 Coverage over subject: 135-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g043214m | 793 | hhsearch probability: 93.68 Identity: 21% subject length: 308 Length of aligned reigon: 96 Coverage over query: 135-233 Coverage over subject: 128-251 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1084, Predicted GTPase [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] |
| 1g017873m | 365 | hhsearch probability: 94.48 Identity: 23% subject length: 308 Length of aligned reigon: 52 Coverage over query: 13-65 Coverage over subject: 123-179 |
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1159, Era GTPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG4240, Predicted kinase [General function prediction only] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG2403, Predicted GTPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] |
| 1g005661m | 685 | hhsearch probability: 97.19 Identity: 31% subject length: 308 Length of aligned reigon: 70 Coverage over query: 229-298 Coverage over subject: 139-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] |
| 1g025762m | 248 | hhsearch probability: 98.15 Identity: 29% subject length: 308 Length of aligned reigon: 49 Coverage over query: 73-121 Coverage over subject: 128-178 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1485, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g005667m | 684 | hhsearch probability: 96.44 Identity: 21% subject length: 308 Length of aligned reigon: 76 Coverage over query: 331-407 Coverage over subject: 138-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] |
| 1g040463m | 192 | hhsearch probability: 97.78 Identity: 33% subject length: 308 Length of aligned reigon: 24 Coverage over query: 32-55 Coverage over subject: 138-161 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g013285m | 446 | hhsearch probability: 97.57 Identity: 22% subject length: 308 Length of aligned reigon: 72 Coverage over query: 225-296 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g013281m | 446 | hhsearch probability: 97.57 Identity: 22% subject length: 308 Length of aligned reigon: 72 Coverage over query: 225-296 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g005367m | 700 | hhsearch probability: 90.33 Identity: 19% subject length: 308 Length of aligned reigon: 100 Coverage over query: 1-108 Coverage over subject: 145-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g004878m | 725 | hhsearch probability: 98.07 Identity: 22% subject length: 308 Length of aligned reigon: 90 Coverage over query: 302-394 Coverage over subject: 128-230 |
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] |
| 1g013269m | 446 | hhsearch probability: 97.57 Identity: 22% subject length: 308 Length of aligned reigon: 72 Coverage over query: 225-296 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g019694m | 337 | hhsearch probability: 97.51 Identity: 15% subject length: 308 Length of aligned reigon: 72 Coverage over query: 22-93 Coverage over subject: 138-227 |
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG0645, Predicted kinase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] |
| 1g042574m | 929 | hhsearch probability: 95.36 Identity: 20% subject length: 308 Length of aligned reigon: 119 Coverage over query: 153-281 Coverage over subject: 128-253 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4240, Predicted kinase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g005066m | 715 | hhsearch probability: 97.20 Identity: 29% subject length: 308 Length of aligned reigon: 69 Coverage over query: 259-327 Coverage over subject: 139-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1855, ATPase (PilT family) [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g008638m | 558 | hhsearch probability: 91.69 Identity: 20% subject length: 308 Length of aligned reigon: 40 Coverage over query: 229-268 Coverage over subject: 140-181 |
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] COG1158, Rho Transcription termination factor [Transcription] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g042771m | 436 | hhsearch probability: 97.81 Identity: 24% subject length: 308 Length of aligned reigon: 74 Coverage over query: 164-237 Coverage over subject: 135-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g008685m | 557 | hhsearch probability: 95.86 Identity: 17% subject length: 308 Length of aligned reigon: 110 Coverage over query: 200-314 Coverage over subject: 139-253 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g002559m | 908 | hhsearch probability: 93.69 Identity: 16% subject length: 308 Length of aligned reigon: 116 Coverage over query: 181-314 Coverage over subject: 138-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3910, Predicted ATPase [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1084, Predicted GTPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g014789m | 418 | hhsearch probability: 97.71 Identity: 27% subject length: 308 Length of aligned reigon: 30 Coverage over query: 51-80 Coverage over subject: 135-164 |
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1674, FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g001788m | 1013 | hhsearch probability: 96.21 Identity: 20% subject length: 308 Length of aligned reigon: 85 Coverage over query: 668-757 Coverage over subject: 140-244 |
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] |
| 1g035959m | 338 | hhsearch probability: 96.95 Identity: 32% subject length: 308 Length of aligned reigon: 34 Coverage over query: 219-252 Coverage over subject: 128-161 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0802, Predicted ATPase or kinase [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g008014m | 581 | hhsearch probability: 97.10 Identity: 22% subject length: 308 Length of aligned reigon: 77 Coverage over query: 331-408 Coverage over subject: 138-231 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] |
| 1g036857m | 170 | hhsearch probability: 96.00 Identity: 43% subject length: 308 Length of aligned reigon: 14 Coverage over query: 44-57 Coverage over subject: 144-158 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] |
| 1g002130m | 961 | hhsearch probability: 92.87 Identity: 8% subject length: 308 Length of aligned reigon: 62 Coverage over query: 876-941 Coverage over subject: 218-279 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g007444m | 603 | hhsearch probability: 95.75 Identity: 23% subject length: 308 Length of aligned reigon: 26 Coverage over query: 116-141 Coverage over subject: 137-162 |
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1240, ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1084, Predicted GTPase [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g015188m | 411 | hhsearch probability: 97.46 Identity: 40% subject length: 308 Length of aligned reigon: 25 Coverage over query: 67-91 Coverage over subject: 138-162 |
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g015187m | 411 | hhsearch probability: 97.46 Identity: 40% subject length: 308 Length of aligned reigon: 25 Coverage over query: 67-91 Coverage over subject: 138-162 |
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g008176m | 575 | hhsearch probability: 96.90 Identity: 21% subject length: 308 Length of aligned reigon: 77 Coverage over query: 331-408 Coverage over subject: 138-231 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] |
| 1g043863m | 653 | hhsearch probability: 97.29 Identity: 24% subject length: 308 Length of aligned reigon: 71 Coverage over query: 399-469 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g011553m | 483 | hhsearch probability: 97.54 Identity: 23% subject length: 308 Length of aligned reigon: 71 Coverage over query: 226-296 Coverage over subject: 138-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g004834m | 728 | hhsearch probability: 97.31 Identity: 46% subject length: 308 Length of aligned reigon: 24 Coverage over query: 241-264 Coverage over subject: 138-161 |
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1750, Archaeal serine proteases [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3480, SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1485, Predicted ATPase [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] |
| 1g018745m | 351 | hhsearch probability: 97.33 Identity: 15% subject length: 308 Length of aligned reigon: 73 Coverage over query: 150-222 Coverage over subject: 138-228 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g005637m | 686 | hhsearch probability: 96.67 Identity: 21% subject length: 308 Length of aligned reigon: 76 Coverage over query: 331-407 Coverage over subject: 138-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g003349m | 828 | hhsearch probability: 97.10 Identity: 46% subject length: 308 Length of aligned reigon: 24 Coverage over query: 341-364 Coverage over subject: 138-161 |
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1750, Archaeal serine proteases [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3480, SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] |
| 1g015918m | 398 | hhsearch probability: 96.95 Identity: 26% subject length: 308 Length of aligned reigon: 27 Coverage over query: 73-99 Coverage over subject: 138-164 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4240, Predicted kinase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g011305m | 489 | hhsearch probability: 97.43 Identity: 26% subject length: 308 Length of aligned reigon: 72 Coverage over query: 241-312 Coverage over subject: 136-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g038663m | 385 | hhsearch probability: 96.59 Identity: 17% subject length: 308 Length of aligned reigon: 122 Coverage over query: 169-300 Coverage over subject: 128-258 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] |
| 1g047225m | 287 | hhsearch probability: 97.84 Identity: 26% subject length: 308 Length of aligned reigon: 92 Coverage over query: 18-116 Coverage over subject: 138-243 |
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4240, Predicted kinase [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] |
| 1g014249m | 428 | hhsearch probability: 94.97 Identity: 28% subject length: 308 Length of aligned reigon: 29 Coverage over query: 224-252 Coverage over subject: 134-163 |
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] COG1158, Rho Transcription termination factor [Transcription] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g014228m | 428 | hhsearch probability: 94.97 Identity: 28% subject length: 308 Length of aligned reigon: 29 Coverage over query: 224-252 Coverage over subject: 134-163 |
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] COG1158, Rho Transcription termination factor [Transcription] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g016044m | 396 | hhsearch probability: 97.66 Identity: 24% subject length: 308 Length of aligned reigon: 72 Coverage over query: 123-194 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] |
| 1g010888m | 498 | hhsearch probability: 97.39 Identity: 26% subject length: 308 Length of aligned reigon: 74 Coverage over query: 249-322 Coverage over subject: 135-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g008664m | 558 | hhsearch probability: 97.61 Identity: 22% subject length: 308 Length of aligned reigon: 101 Coverage over query: 144-252 Coverage over subject: 123-250 |
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5207, UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3910, Predicted ATPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g011400m | 487 | hhsearch probability: 97.40 Identity: 26% subject length: 308 Length of aligned reigon: 72 Coverage over query: 239-310 Coverage over subject: 136-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1485, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g014525m | 423 | hhsearch probability: 97.86 Identity: 23% subject length: 308 Length of aligned reigon: 70 Coverage over query: 205-274 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] |
| 1g012525m | 461 | hhsearch probability: 97.05 Identity: 21% subject length: 308 Length of aligned reigon: 80 Coverage over query: 325-404 Coverage over subject: 137-232 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] |
| 1g042806m | 390 | hhsearch probability: 96.39 Identity: 21% subject length: 308 Length of aligned reigon: 119 Coverage over query: 166-294 Coverage over subject: 128-255 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4240, Predicted kinase [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g037416m | 362 | hhsearch probability: 96.90 Identity: 31% subject length: 308 Length of aligned reigon: 26 Coverage over query: 53-78 Coverage over subject: 139-164 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] |
| 1g044214m | 385 | hhsearch probability: 96.46 Identity: 17% subject length: 308 Length of aligned reigon: 109 Coverage over query: 54-167 Coverage over subject: 139-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g041079m | 945 | hhsearch probability: 95.38 Identity: 17% subject length: 308 Length of aligned reigon: 108 Coverage over query: 160-273 Coverage over subject: 139-252 |
COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG3899, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG0714, MoxR-like ATPases [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG3910, Predicted ATPase [General function prediction only] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g039866m | 418 | hhsearch probability: 97.81 Identity: 22% subject length: 308 Length of aligned reigon: 72 Coverage over query: 199-270 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g043332m | 897 | hhsearch probability: 95.17 Identity: 22% subject length: 308 Length of aligned reigon: 123 Coverage over query: 153-285 Coverage over subject: 128-257 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g036714m | 932 | hhsearch probability: 95.24 Identity: 21% subject length: 308 Length of aligned reigon: 117 Coverage over query: 148-277 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g009263m | 539 | hhsearch probability: 97.70 Identity: 26% subject length: 308 Length of aligned reigon: 70 Coverage over query: 60-129 Coverage over subject: 138-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] |
| 1g005670m | 684 | hhsearch probability: 96.85 Identity: 21% subject length: 308 Length of aligned reigon: 76 Coverage over query: 331-407 Coverage over subject: 138-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] |
| 1g038763m | 690 | hhsearch probability: 94.96 Identity: 31% subject length: 308 Length of aligned reigon: 36 Coverage over query: 254-289 Coverage over subject: 140-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1204, Superfamily II helicase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3911, Predicted ATPase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] |
| 1g036464m | 226 | hhsearch probability: 98.38 Identity: 20% subject length: 308 Length of aligned reigon: 104 Coverage over query: 71-193 Coverage over subject: 133-254 |
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g037205m | 439 | hhsearch probability: 95.52 Identity: 17% subject length: 308 Length of aligned reigon: 92 Coverage over query: 137-231 Coverage over subject: 137-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1100, GTPase SAR1 and related small G proteins [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] |
| 1g041067m | 770 | hhsearch probability: 95.55 Identity: 17% subject length: 308 Length of aligned reigon: 109 Coverage over query: 186-299 Coverage over subject: 138-251 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] |
| 1g005762m | 678 | hhsearch probability: 96.99 Identity: 21% subject length: 308 Length of aligned reigon: 89 Coverage over query: 325-429 Coverage over subject: 137-241 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] |
| 1g036633m | 550 | hhsearch probability: 97.60 Identity: 21% subject length: 308 Length of aligned reigon: 85 Coverage over query: 239-328 Coverage over subject: 138-243 |
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g005663m | 684 | hhsearch probability: 96.83 Identity: 21% subject length: 308 Length of aligned reigon: 76 Coverage over query: 331-407 Coverage over subject: 138-230 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1485, Predicted ATPase [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] |
| 1g005186m | 710 | hhsearch probability: 96.22 Identity: 15% subject length: 308 Length of aligned reigon: 93 Coverage over query: 339-443 Coverage over subject: 138-243 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] |
| 1g006652m | 637 | hhsearch probability: 96.24 Identity: 24% subject length: 308 Length of aligned reigon: 37 Coverage over query: 214-250 Coverage over subject: 139-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3911, Predicted ATPase [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] |
| 1g001355m | 1093 | hhsearch probability: 94.82 Identity: 20% subject length: 308 Length of aligned reigon: 92 Coverage over query: 728-832 Coverage over subject: 139-243 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g008329m | 570 | hhsearch probability: 97.17 Identity: 19% subject length: 308 Length of aligned reigon: 77 Coverage over query: 331-408 Coverage over subject: 138-231 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] |
| 1g009911m | 522 | hhsearch probability: 97.62 Identity: 25% subject length: 308 Length of aligned reigon: 71 Coverage over query: 271-341 Coverage over subject: 137-229 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism] |
| 1g010975m | 496 | hhsearch probability: 97.40 Identity: 26% subject length: 308 Length of aligned reigon: 72 Coverage over query: 249-320 Coverage over subject: 137-230 |
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1485, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1855, ATPase (PilT family) [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] |
| 1g002758m | 884 | hhsearch probability: 95.56 Identity: 16% subject length: 308 Length of aligned reigon: 91 Coverage over query: 514-617 Coverage over subject: 139-243 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] |
| 1g012305m | 466 | hhsearch probability: 97.28 Identity: 25% subject length: 308 Length of aligned reigon: 72 Coverage over query: 387-459 Coverage over subject: 137-231 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] |
| 1g016911m | 380 | hhsearch probability: 97.58 Identity: 24% subject length: 308 Length of aligned reigon: 74 Coverage over query: 240-313 Coverage over subject: 135-230 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1485, Predicted ATPase [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] |
| 1g038067m | 510 | hhsearch probability: 97.37 Identity: 21% subject length: 308 Length of aligned reigon: 80 Coverage over query: 162-241 Coverage over subject: 136-231 |
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] |
| 1g004862m | 726 | hhsearch probability: 96.66 Identity: 24% subject length: 308 Length of aligned reigon: 29 Coverage over query: 366-394 Coverage over subject: 136-164 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3378, Phage associated DNA primase [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g005024m | 718 | hhsearch probability: 96.90 Identity: 30% subject length: 308 Length of aligned reigon: 27 Coverage over query: 369-395 Coverage over subject: 137-163 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2766, PrkA Putative Ser protein kinase [Signal transduction mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0802, Predicted ATPase or kinase [General function prediction only] |
| 1g002353m | 932 | hhsearch probability: 95.96 Identity: 25% subject length: 308 Length of aligned reigon: 28 Coverage over query: 534-561 Coverage over subject: 136-163 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g035724m | 1939 | hhsearch probability: 95.60 Identity: 15% subject length: 308 Length of aligned reigon: 84 Coverage over query: 233-317 Coverage over subject: 140-256 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG5290, IkappaB kinase complex, IKAP component [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4889, Predicted helicase [General function prediction only] COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g043250m | 507 | hhsearch probability: 96.54 Identity: 18% subject length: 308 Length of aligned reigon: 107 Coverage over query: 200-311 Coverage over subject: 140-253 |
COG3899, Predicted ATPase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] |
| 1g004502m | 748 | hhsearch probability: 96.50 Identity: 34% subject length: 308 Length of aligned reigon: 29 Coverage over query: 328-356 Coverage over subject: 136-164 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g040894m | 169 | hhsearch probability: 96.80 Identity: 39% subject length: 308 Length of aligned reigon: 18 Coverage over query: 1-18 Coverage over subject: 145-162 |
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0645, Predicted kinase [General function prediction only] COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4639, Predicted kinase [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1660, Predicted P-loop-containing kinase [General function prediction only] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1072, CoaA Panthothenate kinase [Coenzyme metabolism] COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3911, Predicted ATPase [General function prediction only] COG0802, Predicted ATPase or kinase [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG5324, Uncharacterized conserved protein [Function unknown] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2326, Uncharacterized conserved protein [Function unknown] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g048064m | 429 | hhsearch probability: 96.89 Identity: 17% subject length: 308 Length of aligned reigon: 111 Coverage over query: 108-224 Coverage over subject: 136-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] |
| 1g000509m | 1456 | hhsearch probability: 93.35 Identity: 28% subject length: 308 Length of aligned reigon: 39 Coverage over query: 837-875 Coverage over subject: 140-181 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g003637m | 806 | hhsearch probability: 96.68 Identity: 36% subject length: 308 Length of aligned reigon: 28 Coverage over query: 478-505 Coverage over subject: 136-163 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g000698m | 1345 | hhsearch probability: 95.02 Identity: 18% subject length: 308 Length of aligned reigon: 119 Coverage over query: 962-1114 Coverage over subject: 139-263 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4343, CRISPR-associated protein, RecB family exonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG2887, RecB family exonuclease [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g007723m | 591 | hhsearch probability: 98.31 Identity: 19% subject length: 308 Length of aligned reigon: 116 Coverage over query: 300-434 Coverage over subject: 126-254 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] |
| 1g006051m | 663 | hhsearch probability: 97.27 Identity: 18% subject length: 308 Length of aligned reigon: 89 Coverage over query: 347-437 Coverage over subject: 137-244 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g009230m | 539 | hhsearch probability: 97.53 Identity: 18% subject length: 308 Length of aligned reigon: 131 Coverage over query: 294-478 Coverage over subject: 133-269 |
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0358, DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4643, Uncharacterized protein conserved in bacteria [Function unknown] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] |
| 1g003809m | 794 | hhsearch probability: 96.43 Identity: 29% subject length: 308 Length of aligned reigon: 28 Coverage over query: 388-415 Coverage over subject: 136-163 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] |
| 1g040742m | 581 | hhsearch probability: 97.37 Identity: 29% subject length: 308 Length of aligned reigon: 28 Coverage over query: 288-315 Coverage over subject: 136-163 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3378, Phage associated DNA primase [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g047481m | 279 | hhsearch probability: 97.06 Identity: 17% subject length: 308 Length of aligned reigon: 109 Coverage over query: 163-276 Coverage over subject: 137-250 |
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3899, Predicted ATPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG0714, MoxR-like ATPases [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] |
| 1g041923m | 529 | hhsearch probability: 96.44 Identity: 17% subject length: 308 Length of aligned reigon: 110 Coverage over query: 228-343 Coverage over subject: 137-252 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] |
| 1g006311m | 651 | hhsearch probability: 95.05 Identity: 8% subject length: 308 Length of aligned reigon: 62 Coverage over query: 566-631 Coverage over subject: 218-279 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] |
| 1g006386m | 647 | hhsearch probability: 96.62 Identity: 24% subject length: 308 Length of aligned reigon: 37 Coverage over query: 214-250 Coverage over subject: 139-180 |
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3911, Predicted ATPase [General function prediction only] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g038611m | 837 | hhsearch probability: 96.24 Identity: 18% subject length: 308 Length of aligned reigon: 120 Coverage over query: 122-251 Coverage over subject: 128-254 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4886, Leucine-rich repeat (LRR) protein [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3903, Predicted ATPase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g041690m | 233 | hhsearch probability: 98.78 Identity: 24% subject length: 308 Length of aligned reigon: 93 Coverage over query: 18-119 Coverage over subject: 135-232 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] |
| 1g014938m | 415 | hhsearch probability: 95.61 Identity: 46% subject length: 308 Length of aligned reigon: 26 Coverage over query: 387-412 Coverage over subject: 137-162 |
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0802, Predicted ATPase or kinase [General function prediction only] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] COG1485, Predicted ATPase [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g011953m | 474 | hhsearch probability: 97.40 Identity: 20% subject length: 308 Length of aligned reigon: 90 Coverage over query: 346-437 Coverage over subject: 136-244 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5245, DYN1 Dynein, heavy chain [Cytoskeleton] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1485, Predicted ATPase [General function prediction only] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1855, ATPase (PilT family) [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] |
| 1g040862m | 381 | hhsearch probability: 97.36 Identity: 16% subject length: 308 Length of aligned reigon: 113 Coverage over query: 83-200 Coverage over subject: 139-256 |
COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3899, Predicted ATPase [General function prediction only] COG3903, Predicted ATPase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3910, Predicted ATPase [General function prediction only] COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0714, MoxR-like ATPases [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] |
| 1g005200m | 709 | hhsearch probability: 97.08 Identity: 18% subject length: 308 Length of aligned reigon: 131 Coverage over query: 464-648 Coverage over subject: 133-269 |
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0358, DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4643, Uncharacterized protein conserved in bacteria [Function unknown] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1158, Rho Transcription termination factor [Transcription] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g005204m | 709 | hhsearch probability: 97.08 Identity: 18% subject length: 308 Length of aligned reigon: 131 Coverage over query: 464-648 Coverage over subject: 133-269 |
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0358, DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4643, Uncharacterized protein conserved in bacteria [Function unknown] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1158, Rho Transcription termination factor [Transcription] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g003769m | 796 | hhsearch probability: 98.00 Identity: 13% subject length: 308 Length of aligned reigon: 132 Coverage over query: 199-364 Coverage over subject: 128-274 |
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0714, MoxR-like ATPases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g017904m | 364 | hhsearch probability: 92.77 Identity: 22% subject length: 308 Length of aligned reigon: 91 Coverage over query: 38-145 Coverage over subject: 122-225 |
COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] COG0523, Putative GTPases (G3E family) [General function prediction only] COG2403, Predicted GTPase [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] COG1341, Predicted GTPase or GTP-binding protein [General function prediction only] COG3367, Uncharacterized conserved protein [Function unknown] COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4917, EutP Ethanolamine utilization protein [Amino acid transport and metabolism] COG1159, Era GTPase [General function prediction only] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] COG1084, Predicted GTPase [General function prediction only] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] |
| 1g014661m | 420 | hhsearch probability: 94.85 Identity: 32% subject length: 308 Length of aligned reigon: 28 Coverage over query: 345-372 Coverage over subject: 135-162 |
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] COG0714, MoxR-like ATPases [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g019702m | 337 | hhsearch probability: 100.00 Identity: 37% subject length: 308 Length of aligned reigon: 278 Coverage over query: 2-284 Coverage over subject: 1-301 |
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g026207m | 241 | hhsearch probability: 99.89 Identity: 41% subject length: 308 Length of aligned reigon: 150 Coverage over query: 4-154 Coverage over subject: 107-268 |
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1855, ATPase (PilT family) [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG3910, Predicted ATPase [General function prediction only] |
| 1g017797m | 365 | hhsearch probability: 100.00 Identity: 39% subject length: 308 Length of aligned reigon: 241 Coverage over query: 2-250 Coverage over subject: 1-268 |
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g005344m | 701 | hhsearch probability: 100.00 Identity: 38% subject length: 308 Length of aligned reigon: 281 Coverage over query: 99-382 Coverage over subject: 1-304 |
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3910, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g025371m | 254 | hhsearch probability: 100.00 Identity: 38% subject length: 308 Length of aligned reigon: 247 Coverage over query: 2-251 Coverage over subject: 1-269 |
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1855, ATPase (PilT family) [General function prediction only] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g038101m | 660 | hhsearch probability: 100.00 Identity: 38% subject length: 308 Length of aligned reigon: 280 Coverage over query: 74-356 Coverage over subject: 1-303 |
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3910, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |