| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG0514 |
All predicted COG clusters |
|---|---|---|---|
| 1g011052m | 494 | hhsearch probability: 94.82 Identity: 14% subject length: 590 Length of aligned reigon: 213 Coverage over query: 88-320 Coverage over subject: 57-324 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g000849m | 1254 | hhsearch probability: 99.09 Identity: 25% subject length: 590 Length of aligned reigon: 88 Coverage over query: 1-100 Coverage over subject: 264-351 |
COG1204, Superfamily II helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g036378m | 815 | hhsearch probability: 98.75 Identity: 15% subject length: 590 Length of aligned reigon: 349 Coverage over query: 421-807 Coverage over subject: 56-444 |
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g043190m | 1492 | hhsearch probability: 99.71 Identity: 22% subject length: 590 Length of aligned reigon: 183 Coverage over query: 7-248 Coverage over subject: 166-351 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g000324m | 1665 | hhsearch probability: 99.90 Identity: 22% subject length: 590 Length of aligned reigon: 268 Coverage over query: 1330-1665 Coverage over subject: 7-286 |
COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g000129m | 2114 | hhsearch probability: 99.98 Identity: 20% subject length: 590 Length of aligned reigon: 327 Coverage over query: 1331-1739 Coverage over subject: 8-348 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g000114m | 2158 | hhsearch probability: 99.98 Identity: 21% subject length: 590 Length of aligned reigon: 327 Coverage over query: 486-903 Coverage over subject: 9-351 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g042424m | 138 | hhsearch probability: 97.43 Identity: 13% subject length: 590 Length of aligned reigon: 76 Coverage over query: 56-135 Coverage over subject: 33-120 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG3451, VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g002378m | 929 | hhsearch probability: 90.61 Identity: 28% subject length: 590 Length of aligned reigon: 39 Coverage over query: 19-61 Coverage over subject: 18-56 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g002565m | 907 | hhsearch probability: 97.29 Identity: 16% subject length: 590 Length of aligned reigon: 49 Coverage over query: 854-902 Coverage over subject: 232-280 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG5243, HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] |
| 1g001656m | 1036 | hhsearch probability: 95.27 Identity: 24% subject length: 590 Length of aligned reigon: 70 Coverage over query: 11-118 Coverage over subject: 11-81 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5602, SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g004604m | 743 | hhsearch probability: 95.92 Identity: 17% subject length: 590 Length of aligned reigon: 161 Coverage over query: 274-566 Coverage over subject: 17-193 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] |
| 1g004379m | 758 | hhsearch probability: 96.39 Identity: 24% subject length: 590 Length of aligned reigon: 70 Coverage over query: 11-118 Coverage over subject: 11-81 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] |
| 1g001153m | 1137 | hhsearch probability: 90.19 Identity: 15% subject length: 590 Length of aligned reigon: 130 Coverage over query: 498-654 Coverage over subject: 57-194 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g001607m | 1045 | hhsearch probability: 91.58 Identity: 14% subject length: 590 Length of aligned reigon: 132 Coverage over query: 220-378 Coverage over subject: 56-195 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g000237m | 1806 | hhsearch probability: 96.56 Identity: 18% subject length: 590 Length of aligned reigon: 165 Coverage over query: 1444-1628 Coverage over subject: 16-194 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG5181, HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] |
| 1g001510m | 1064 | hhsearch probability: 91.06 Identity: 15% subject length: 590 Length of aligned reigon: 130 Coverage over query: 498-654 Coverage over subject: 57-194 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g001825m | 1009 | hhsearch probability: 94.89 Identity: 16% subject length: 590 Length of aligned reigon: 163 Coverage over query: 666-963 Coverage over subject: 17-195 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g000892m | 1236 | hhsearch probability: 90.68 Identity: 15% subject length: 590 Length of aligned reigon: 131 Coverage over query: 498-655 Coverage over subject: 57-195 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g029993m | 184 | hhsearch probability: 98.10 Identity: 16% subject length: 590 Length of aligned reigon: 128 Coverage over query: 2-136 Coverage over subject: 60-197 |
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g001037m | 1179 | hhsearch probability: 99.34 Identity: 19% subject length: 590 Length of aligned reigon: 234 Coverage over query: 23-391 Coverage over subject: 92-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] |
| 1g030094m | 183 | hhsearch probability: 98.34 Identity: 17% subject length: 590 Length of aligned reigon: 128 Coverage over query: 2-136 Coverage over subject: 60-197 |
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g004910m | 724 | hhsearch probability: 98.38 Identity: 20% subject length: 590 Length of aligned reigon: 71 Coverage over query: 8-89 Coverage over subject: 9-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0714, MoxR-like ATPases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g028848m | 202 | hhsearch probability: 98.40 Identity: 23% subject length: 590 Length of aligned reigon: 73 Coverage over query: 84-162 Coverage over subject: 8-81 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g002077m | 972 | hhsearch probability: 99.10 Identity: 23% subject length: 590 Length of aligned reigon: 101 Coverage over query: 819-921 Coverage over subject: 232-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG5220, TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g039292m | 520 | hhsearch probability: 98.53 Identity: 20% subject length: 590 Length of aligned reigon: 173 Coverage over query: 167-361 Coverage over subject: 17-196 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2842, Uncharacterized ATPase, putative transposase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g004385m | 757 | hhsearch probability: 98.22 Identity: 21% subject length: 590 Length of aligned reigon: 71 Coverage over query: 8-89 Coverage over subject: 9-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] |
| 1g006790m | 631 | hhsearch probability: 98.24 Identity: 20% subject length: 590 Length of aligned reigon: 69 Coverage over query: 10-89 Coverage over subject: 11-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g042526m | 284 | hhsearch probability: 98.51 Identity: 13% subject length: 590 Length of aligned reigon: 135 Coverage over query: 46-211 Coverage over subject: 6-157 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] |
| 1g035699m | 633 | hhsearch probability: 99.70 Identity: 15% subject length: 590 Length of aligned reigon: 264 Coverage over query: 335-615 Coverage over subject: 22-319 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g028887m | 202 | hhsearch probability: 98.59 Identity: 25% subject length: 590 Length of aligned reigon: 69 Coverage over query: 88-162 Coverage over subject: 13-81 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g005155m | 711 | hhsearch probability: 99.54 Identity: 20% subject length: 590 Length of aligned reigon: 262 Coverage over query: 5-420 Coverage over subject: 20-297 |
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g004358m | 759 | hhsearch probability: 98.30 Identity: 21% subject length: 590 Length of aligned reigon: 70 Coverage over query: 9-89 Coverage over subject: 10-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] |
| 1g000096m | 2260 | hhsearch probability: 98.62 Identity: 14% subject length: 590 Length of aligned reigon: 105 Coverage over query: 74-181 Coverage over subject: 228-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g001094m | 1159 | hhsearch probability: 99.11 Identity: 20% subject length: 590 Length of aligned reigon: 109 Coverage over query: 1003-1115 Coverage over subject: 229-337 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5220, TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] |
| 1g000095m | 2260 | hhsearch probability: 98.62 Identity: 14% subject length: 590 Length of aligned reigon: 105 Coverage over query: 74-181 Coverage over subject: 228-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] |
| 1g038192m | 764 | hhsearch probability: 99.52 Identity: 29% subject length: 590 Length of aligned reigon: 84 Coverage over query: 437-538 Coverage over subject: 255-339 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG3910, Predicted ATPase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g000537m | 1435 | hhsearch probability: 99.03 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1280-1384 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g007492m | 601 | hhsearch probability: 99.31 Identity: 21% subject length: 590 Length of aligned reigon: 140 Coverage over query: 430-592 Coverage over subject: 7-158 |
COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g000549m | 1431 | hhsearch probability: 99.07 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1276-1380 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g002515m | 913 | hhsearch probability: 99.50 Identity: 19% subject length: 590 Length of aligned reigon: 263 Coverage over query: 6-420 Coverage over subject: 21-297 |
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g000544m | 1433 | hhsearch probability: 99.09 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1278-1382 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g000539m | 1433 | hhsearch probability: 99.09 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1278-1382 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g013623m | 439 | hhsearch probability: 99.24 Identity: 16% subject length: 590 Length of aligned reigon: 134 Coverage over query: 281-434 Coverage over subject: 7-145 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g002898m | 869 | hhsearch probability: 99.56 Identity: 20% subject length: 590 Length of aligned reigon: 263 Coverage over query: 5-420 Coverage over subject: 20-297 |
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g000575m | 1413 | hhsearch probability: 99.09 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1258-1362 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g001098m | 1158 | hhsearch probability: 99.17 Identity: 16% subject length: 590 Length of aligned reigon: 112 Coverage over query: 990-1104 Coverage over subject: 229-340 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g000566m | 1416 | hhsearch probability: 99.13 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1261-1365 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g001095m | 1158 | hhsearch probability: 99.17 Identity: 16% subject length: 590 Length of aligned reigon: 112 Coverage over query: 990-1104 Coverage over subject: 229-340 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g000542m | 1433 | hhsearch probability: 99.11 Identity: 20% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1278-1382 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g044798m | 1231 | hhsearch probability: 99.71 Identity: 16% subject length: 590 Length of aligned reigon: 314 Coverage over query: 400-876 Coverage over subject: 16-340 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000099m | 2240 | hhsearch probability: 99.78 Identity: 19% subject length: 590 Length of aligned reigon: 307 Coverage over query: 1000-1452 Coverage over subject: 17-335 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g012319m | 466 | hhsearch probability: 99.68 Identity: 22% subject length: 590 Length of aligned reigon: 213 Coverage over query: 191-463 Coverage over subject: 13-253 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] |
| 1g014666m | 420 | hhsearch probability: 99.65 Identity: 16% subject length: 590 Length of aligned reigon: 176 Coverage over query: 154-370 Coverage over subject: 7-189 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g001841m | 1007 | hhsearch probability: 99.36 Identity: 23% subject length: 590 Length of aligned reigon: 101 Coverage over query: 854-956 Coverage over subject: 232-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] |
| 1g001840m | 1007 | hhsearch probability: 99.36 Identity: 23% subject length: 590 Length of aligned reigon: 101 Coverage over query: 854-956 Coverage over subject: 232-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] |
| 1g000101m | 2239 | hhsearch probability: 99.80 Identity: 19% subject length: 590 Length of aligned reigon: 307 Coverage over query: 1000-1451 Coverage over subject: 17-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g045263m | 742 | hhsearch probability: 99.43 Identity: 17% subject length: 590 Length of aligned reigon: 173 Coverage over query: 501-708 Coverage over subject: 6-187 |
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g001680m | 1032 | hhsearch probability: 99.36 Identity: 22% subject length: 590 Length of aligned reigon: 107 Coverage over query: 879-989 Coverage over subject: 232-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] |
| 1g000916m | 1225 | hhsearch probability: 99.71 Identity: 21% subject length: 590 Length of aligned reigon: 111 Coverage over query: 559-694 Coverage over subject: 228-339 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1847, Jag Predicted RNA-binding protein [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g012337m | 465 | hhsearch probability: 99.69 Identity: 25% subject length: 590 Length of aligned reigon: 172 Coverage over query: 186-416 Coverage over subject: 7-190 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g042305m | 1055 | hhsearch probability: 99.87 Identity: 22% subject length: 590 Length of aligned reigon: 311 Coverage over query: 189-609 Coverage over subject: 16-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g003111m | 846 | hhsearch probability: 98.32 Identity: 21% subject length: 590 Length of aligned reigon: 109 Coverage over query: 102-230 Coverage over subject: 230-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG5063, CTH1 CCCH-type Zn-finger protein [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG5084, YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g020452m | 326 | hhsearch probability: 99.73 Identity: 24% subject length: 590 Length of aligned reigon: 172 Coverage over query: 47-277 Coverage over subject: 7-190 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] |
| 1g000107m | 2191 | hhsearch probability: 99.97 Identity: 24% subject length: 590 Length of aligned reigon: 326 Coverage over query: 515-946 Coverage over subject: 7-351 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0749, PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] |
| 1g002901m | 869 | hhsearch probability: 99.55 Identity: 19% subject length: 590 Length of aligned reigon: 109 Coverage over query: 714-828 Coverage over subject: 230-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG5243, HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] |
| 1g000991m | 1197 | hhsearch probability: 99.93 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 303-711 Coverage over subject: 22-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] |
| 1g012244m | 467 | hhsearch probability: 97.63 Identity: 21% subject length: 590 Length of aligned reigon: 71 Coverage over query: 8-89 Coverage over subject: 9-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0714, MoxR-like ATPases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g000740m | 1321 | hhsearch probability: 99.44 Identity: 16% subject length: 590 Length of aligned reigon: 314 Coverage over query: 564-1104 Coverage over subject: 16-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000160m | 1992 | hhsearch probability: 99.22 Identity: 24% subject length: 590 Length of aligned reigon: 107 Coverage over query: 1012-1122 Coverage over subject: 230-336 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5147, REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] |
| 1g004428m | 754 | hhsearch probability: 99.75 Identity: 14% subject length: 590 Length of aligned reigon: 335 Coverage over query: 243-737 Coverage over subject: 7-348 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] |
| 1g001817m | 1009 | hhsearch probability: 99.94 Identity: 19% subject length: 590 Length of aligned reigon: 302 Coverage over query: 303-711 Coverage over subject: 22-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g001149m | 1138 | hhsearch probability: 99.51 Identity: 16% subject length: 590 Length of aligned reigon: 313 Coverage over query: 381-921 Coverage over subject: 16-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g001834m | 1008 | hhsearch probability: 99.44 Identity: 22% subject length: 590 Length of aligned reigon: 101 Coverage over query: 854-957 Coverage over subject: 232-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] |
| 1g042857m | 1404 | hhsearch probability: 99.68 Identity: 20% subject length: 590 Length of aligned reigon: 308 Coverage over query: 755-1200 Coverage over subject: 17-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5141, PHD zinc finger-containing protein [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000672m | 1360 | hhsearch probability: 99.54 Identity: 16% subject length: 590 Length of aligned reigon: 315 Coverage over query: 722-1262 Coverage over subject: 16-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] |
| 1g000464m | 1479 | hhsearch probability: 99.45 Identity: 16% subject length: 590 Length of aligned reigon: 318 Coverage over query: 722-1266 Coverage over subject: 16-344 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g007505m | 601 | hhsearch probability: 98.21 Identity: 20% subject length: 590 Length of aligned reigon: 70 Coverage over query: 9-89 Coverage over subject: 10-79 |
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0714, MoxR-like ATPases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g027749m | 219 | hhsearch probability: 99.80 Identity: 19% subject length: 590 Length of aligned reigon: 162 Coverage over query: 46-218 Coverage over subject: 7-178 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g000994m | 1196 | hhsearch probability: 99.15 Identity: 18% subject length: 590 Length of aligned reigon: 103 Coverage over query: 1072-1176 Coverage over subject: 230-332 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] |
| 1g044036m | 875 | hhsearch probability: 99.77 Identity: 16% subject length: 590 Length of aligned reigon: 308 Coverage over query: 136-646 Coverage over subject: 17-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g000642m | 1377 | hhsearch probability: 99.24 Identity: 19% subject length: 590 Length of aligned reigon: 108 Coverage over query: 1072-1183 Coverage over subject: 230-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g001615m | 1044 | hhsearch probability: 99.95 Identity: 18% subject length: 590 Length of aligned reigon: 301 Coverage over query: 286-688 Coverage over subject: 21-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g000241m | 1803 | hhsearch probability: 99.76 Identity: 18% subject length: 590 Length of aligned reigon: 311 Coverage over query: 626-1072 Coverage over subject: 16-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000138m | 2062 | hhsearch probability: 99.32 Identity: 24% subject length: 590 Length of aligned reigon: 108 Coverage over query: 1082-1193 Coverage over subject: 230-337 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5147, REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000139m | 2062 | hhsearch probability: 99.32 Identity: 24% subject length: 590 Length of aligned reigon: 108 Coverage over query: 1082-1193 Coverage over subject: 230-337 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5147, REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g002552m | 908 | hhsearch probability: 99.96 Identity: 18% subject length: 590 Length of aligned reigon: 301 Coverage over query: 285-687 Coverage over subject: 20-339 |
COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g043990m | 911 | hhsearch probability: 99.70 Identity: 16% subject length: 590 Length of aligned reigon: 316 Coverage over query: 183-649 Coverage over subject: 17-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000032m | 3212 | hhsearch probability: 99.74 Identity: 19% subject length: 590 Length of aligned reigon: 307 Coverage over query: 691-1134 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000169m | 1953 | hhsearch probability: 99.78 Identity: 19% subject length: 590 Length of aligned reigon: 307 Coverage over query: 1000-1452 Coverage over subject: 17-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g010991m | 496 | hhsearch probability: 99.91 Identity: 18% subject length: 590 Length of aligned reigon: 272 Coverage over query: 25-345 Coverage over subject: 17-326 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g000328m | 1656 | hhsearch probability: 99.79 Identity: 19% subject length: 590 Length of aligned reigon: 307 Coverage over query: 416-868 Coverage over subject: 17-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000174m | 1931 | hhsearch probability: 99.96 Identity: 18% subject length: 590 Length of aligned reigon: 321 Coverage over query: 299-836 Coverage over subject: 13-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1939, Ribonuclease III family protein [Replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g000607m | 1396 | hhsearch probability: 99.94 Identity: 17% subject length: 590 Length of aligned reigon: 316 Coverage over query: 22-508 Coverage over subject: 18-342 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1939, Ribonuclease III family protein [Replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g015712m | 402 | hhsearch probability: 99.79 Identity: 16% subject length: 590 Length of aligned reigon: 179 Coverage over query: 152-353 Coverage over subject: 5-190 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g000018m | 3648 | hhsearch probability: 99.50 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1126-1570 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g003450m | 819 | hhsearch probability: 99.85 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 284-729 Coverage over subject: 16-332 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG3587, Restriction endonuclease [Defense mechanisms] COG5141, PHD zinc finger-containing protein [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g028267m | 211 | hhsearch probability: 97.44 Identity: 36% subject length: 590 Length of aligned reigon: 44 Coverage over query: 154-197 Coverage over subject: 13-56 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g000017m | 3676 | hhsearch probability: 99.52 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1088-1532 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g000684m | 1352 | hhsearch probability: 99.73 Identity: 18% subject length: 590 Length of aligned reigon: 309 Coverage over query: 175-621 Coverage over subject: 16-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000020m | 3617 | hhsearch probability: 99.50 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1088-1532 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] |
| 1g001302m | 1104 | hhsearch probability: 99.70 Identity: 19% subject length: 590 Length of aligned reigon: 306 Coverage over query: 284-730 Coverage over subject: 16-333 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG3587, Restriction endonuclease [Defense mechanisms] COG5141, PHD zinc finger-containing protein [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g010184m | 516 | hhsearch probability: 99.95 Identity: 18% subject length: 590 Length of aligned reigon: 287 Coverage over query: 25-361 Coverage over subject: 17-326 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g000493m | 1462 | hhsearch probability: 99.67 Identity: 19% subject length: 590 Length of aligned reigon: 305 Coverage over query: 284-731 Coverage over subject: 16-334 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000027m | 3574 | hhsearch probability: 99.78 Identity: 19% subject length: 590 Length of aligned reigon: 310 Coverage over query: 1088-1533 Coverage over subject: 15-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g009212m | 540 | hhsearch probability: 99.77 Identity: 17% subject length: 590 Length of aligned reigon: 222 Coverage over query: 281-539 Coverage over subject: 7-240 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g003502m | 815 | hhsearch probability: 99.77 Identity: 18% subject length: 590 Length of aligned reigon: 108 Coverage over query: 662-773 Coverage over subject: 230-337 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g046397m | 901 | hhsearch probability: 99.93 Identity: 20% subject length: 590 Length of aligned reigon: 301 Coverage over query: 13-420 Coverage over subject: 21-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g000482m | 1464 | hhsearch probability: 99.67 Identity: 19% subject length: 590 Length of aligned reigon: 305 Coverage over query: 286-732 Coverage over subject: 16-333 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000494m | 1462 | hhsearch probability: 99.67 Identity: 19% subject length: 590 Length of aligned reigon: 305 Coverage over query: 284-731 Coverage over subject: 16-334 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g000496m | 1462 | hhsearch probability: 99.67 Identity: 19% subject length: 590 Length of aligned reigon: 305 Coverage over query: 284-731 Coverage over subject: 16-334 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g002744m | 885 | hhsearch probability: 99.68 Identity: 17% subject length: 590 Length of aligned reigon: 109 Coverage over query: 732-844 Coverage over subject: 230-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] |
| 1g004850m | 727 | hhsearch probability: 99.92 Identity: 16% subject length: 590 Length of aligned reigon: 309 Coverage over query: 63-422 Coverage over subject: 14-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g038855m | 260 | hhsearch probability: 99.54 Identity: 15% subject length: 590 Length of aligned reigon: 145 Coverage over query: 83-239 Coverage over subject: 166-315 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g000021m | 3616 | hhsearch probability: 99.77 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1089-1533 Coverage over subject: 16-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g015946m | 397 | hhsearch probability: 99.81 Identity: 17% subject length: 590 Length of aligned reigon: 179 Coverage over query: 153-354 Coverage over subject: 6-193 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g000903m | 1232 | hhsearch probability: 99.70 Identity: 20% subject length: 590 Length of aligned reigon: 305 Coverage over query: 284-729 Coverage over subject: 16-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g001750m | 1018 | hhsearch probability: 99.71 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 284-729 Coverage over subject: 16-332 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG5141, PHD zinc finger-containing protein [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g048746m | 755 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 306 Coverage over query: 131-473 Coverage over subject: 17-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g000022m | 3610 | hhsearch probability: 99.78 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1088-1532 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g017196m | 375 | hhsearch probability: 99.91 Identity: 19% subject length: 590 Length of aligned reigon: 257 Coverage over query: 41-375 Coverage over subject: 7-270 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g000026m | 3584 | hhsearch probability: 99.80 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1062-1506 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g047202m | 735 | hhsearch probability: 99.48 Identity: 22% subject length: 590 Length of aligned reigon: 112 Coverage over query: 189-325 Coverage over subject: 228-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g000023m | 3610 | hhsearch probability: 99.78 Identity: 19% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1088-1532 Coverage over subject: 15-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g008221m | 573 | hhsearch probability: 99.92 Identity: 15% subject length: 590 Length of aligned reigon: 310 Coverage over query: 62-421 Coverage over subject: 13-339 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] |
| 1g009477m | 534 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 325 Coverage over query: 37-381 Coverage over subject: 8-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g000883m | 1238 | hhsearch probability: 99.68 Identity: 20% subject length: 590 Length of aligned reigon: 305 Coverage over query: 284-729 Coverage over subject: 16-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g005605m | 688 | hhsearch probability: 99.94 Identity: 15% subject length: 590 Length of aligned reigon: 310 Coverage over query: 63-422 Coverage over subject: 14-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] |
| 1g008345m | 569 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 324 Coverage over query: 36-380 Coverage over subject: 7-344 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g008605m | 560 | hhsearch probability: 99.86 Identity: 16% subject length: 590 Length of aligned reigon: 235 Coverage over query: 281-552 Coverage over subject: 7-253 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g007018m | 621 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 324 Coverage over query: 38-381 Coverage over subject: 9-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g002707m | 890 | hhsearch probability: 97.54 Identity: 17% subject length: 590 Length of aligned reigon: 158 Coverage over query: 214-397 Coverage over subject: 134-297 |
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] |
| 1g022724m | 293 | hhsearch probability: 99.92 Identity: 18% subject length: 590 Length of aligned reigon: 232 Coverage over query: 46-292 Coverage over subject: 7-250 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] |
| 1g000500m | 1460 | hhsearch probability: 99.67 Identity: 20% subject length: 590 Length of aligned reigon: 306 Coverage over query: 284-730 Coverage over subject: 16-333 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g006284m | 652 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 321 Coverage over query: 41-381 Coverage over subject: 13-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] |
| 1g002521m | 913 | hhsearch probability: 99.96 Identity: 18% subject length: 590 Length of aligned reigon: 298 Coverage over query: 255-662 Coverage over subject: 22-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g003924m | 786 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 320 Coverage over query: 41-381 Coverage over subject: 13-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g028826m | 203 | hhsearch probability: 99.63 Identity: 18% subject length: 590 Length of aligned reigon: 175 Coverage over query: 2-202 Coverage over subject: 60-245 |
COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g006698m | 635 | hhsearch probability: 99.85 Identity: 17% subject length: 590 Length of aligned reigon: 314 Coverage over query: 69-554 Coverage over subject: 17-338 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g026925m | 230 | hhsearch probability: 99.79 Identity: 18% subject length: 590 Length of aligned reigon: 200 Coverage over query: 1-229 Coverage over subject: 59-268 |
COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g009003m | 547 | hhsearch probability: 99.94 Identity: 20% subject length: 590 Length of aligned reigon: 264 Coverage over query: 189-538 Coverage over subject: 8-282 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g005858m | 673 | hhsearch probability: 99.80 Identity: 21% subject length: 590 Length of aligned reigon: 307 Coverage over query: 35-462 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] |
| 1g011963m | 474 | hhsearch probability: 99.92 Identity: 15% subject length: 590 Length of aligned reigon: 247 Coverage over query: 193-473 Coverage over subject: 13-278 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g001337m | 1097 | hhsearch probability: 99.47 Identity: 17% subject length: 590 Length of aligned reigon: 310 Coverage over query: 564-1097 Coverage over subject: 16-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5432, RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] |
| 1g008209m | 574 | hhsearch probability: 99.83 Identity: 15% subject length: 590 Length of aligned reigon: 223 Coverage over query: 9-268 Coverage over subject: 108-339 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] |
| 1g000379m | 1604 | hhsearch probability: 99.95 Identity: 18% subject length: 590 Length of aligned reigon: 316 Coverage over query: 45-535 Coverage over subject: 17-343 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1939, Ribonuclease III family protein [Replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g005980m | 666 | hhsearch probability: 99.84 Identity: 14% subject length: 590 Length of aligned reigon: 307 Coverage over query: 173-590 Coverage over subject: 17-332 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g000811m | 1272 | hhsearch probability: 99.72 Identity: 20% subject length: 590 Length of aligned reigon: 306 Coverage over query: 284-730 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g000045m | 2785 | hhsearch probability: 99.80 Identity: 20% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1089-1533 Coverage over subject: 16-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g043110m | 316 | hhsearch probability: 99.84 Identity: 22% subject length: 590 Length of aligned reigon: 200 Coverage over query: 46-281 Coverage over subject: 5-212 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g006737m | 633 | hhsearch probability: 99.81 Identity: 26% subject length: 590 Length of aligned reigon: 165 Coverage over query: 392-579 Coverage over subject: 7-180 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g000810m | 1272 | hhsearch probability: 99.72 Identity: 20% subject length: 590 Length of aligned reigon: 306 Coverage over query: 284-730 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG5141, PHD zinc finger-containing protein [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g031654m | 155 | hhsearch probability: 99.44 Identity: 18% subject length: 590 Length of aligned reigon: 112 Coverage over query: 41-154 Coverage over subject: 6-153 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1674, FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g013858m | 435 | hhsearch probability: 99.97 Identity: 22% subject length: 590 Length of aligned reigon: 269 Coverage over query: 137-434 Coverage over subject: 11-290 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1485, Predicted ATPase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g000854m | 1252 | hhsearch probability: 99.97 Identity: 20% subject length: 590 Length of aligned reigon: 311 Coverage over query: 154-506 Coverage over subject: 8-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g000790m | 1283 | hhsearch probability: 99.95 Identity: 17% subject length: 590 Length of aligned reigon: 301 Coverage over query: 589-932 Coverage over subject: 20-339 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g000756m | 1300 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 327 Coverage over query: 486-903 Coverage over subject: 9-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g048509m | 168 | hhsearch probability: 99.41 Identity: 18% subject length: 590 Length of aligned reigon: 79 Coverage over query: 26-105 Coverage over subject: 228-341 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g000384m | 1590 | hhsearch probability: 99.95 Identity: 18% subject length: 590 Length of aligned reigon: 314 Coverage over query: 45-529 Coverage over subject: 17-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1939, Ribonuclease III family protein [Replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g002937m | 864 | hhsearch probability: 99.79 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 284-729 Coverage over subject: 16-332 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5034, TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5141, PHD zinc finger-containing protein [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g002165m | 957 | hhsearch probability: 99.95 Identity: 20% subject length: 590 Length of aligned reigon: 303 Coverage over query: 30-404 Coverage over subject: 20-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] COG5084, YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG5063, CTH1 CCCH-type Zn-finger protein [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] |
| 1g001046m | 1176 | hhsearch probability: 99.96 Identity: 18% subject length: 590 Length of aligned reigon: 307 Coverage over query: 526-867 Coverage over subject: 19-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG4889, Predicted helicase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] |
| 1g007774m | 590 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 337 Coverage over query: 28-454 Coverage over subject: 4-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g000621m | 1387 | hhsearch probability: 99.97 Identity: 20% subject length: 590 Length of aligned reigon: 312 Coverage over query: 140-493 Coverage over subject: 7-340 |
COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g001729m | 1020 | hhsearch probability: 99.94 Identity: 20% subject length: 590 Length of aligned reigon: 307 Coverage over query: 30-404 Coverage over subject: 20-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG5084, YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] COG5063, CTH1 CCCH-type Zn-finger protein [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g016712m | 384 | hhsearch probability: 99.95 Identity: 19% subject length: 590 Length of aligned reigon: 255 Coverage over query: 110-384 Coverage over subject: 5-284 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g001264m | 1112 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 328 Coverage over query: 480-832 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g004925m | 723 | hhsearch probability: 99.80 Identity: 17% subject length: 590 Length of aligned reigon: 111 Coverage over query: 568-682 Coverage over subject: 228-338 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG5574, PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g039491m | 1379 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 319 Coverage over query: 394-854 Coverage over subject: 10-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g009683m | 529 | hhsearch probability: 99.78 Identity: 18% subject length: 590 Length of aligned reigon: 198 Coverage over query: 1-244 Coverage over subject: 136-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g037717m | 582 | hhsearch probability: 99.96 Identity: 21% subject length: 590 Length of aligned reigon: 295 Coverage over query: 66-395 Coverage over subject: 18-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] |
| 1g000047m | 2693 | hhsearch probability: 99.81 Identity: 20% subject length: 590 Length of aligned reigon: 309 Coverage over query: 1089-1533 Coverage over subject: 16-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g001262m | 1112 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 328 Coverage over query: 480-832 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g004347m | 759 | hhsearch probability: 99.90 Identity: 18% subject length: 590 Length of aligned reigon: 315 Coverage over query: 184-642 Coverage over subject: 12-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g022383m | 298 | hhsearch probability: 99.95 Identity: 18% subject length: 590 Length of aligned reigon: 238 Coverage over query: 46-297 Coverage over subject: 7-255 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] |
| 1g000380m | 1601 | hhsearch probability: 99.96 Identity: 19% subject length: 590 Length of aligned reigon: 317 Coverage over query: 58-542 Coverage over subject: 17-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0571, Rnc dsRNA-specific ribonuclease [Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1939, Ribonuclease III family protein [Replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g004355m | 759 | hhsearch probability: 99.90 Identity: 18% subject length: 590 Length of aligned reigon: 315 Coverage over query: 184-642 Coverage over subject: 12-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g001047m | 1174 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 312 Coverage over query: 151-593 Coverage over subject: 8-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g001758m | 1017 | hhsearch probability: 99.95 Identity: 20% subject length: 590 Length of aligned reigon: 307 Coverage over query: 30-404 Coverage over subject: 20-340 |
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG5063, CTH1 CCCH-type Zn-finger protein [General function prediction only] COG5084, YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG5152, Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] |
| 1g004875m | 726 | hhsearch probability: 99.96 Identity: 20% subject length: 590 Length of aligned reigon: 307 Coverage over query: 30-404 Coverage over subject: 20-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g008207m | 574 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 320 Coverage over query: 122-467 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] |
| 1g001261m | 1112 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 328 Coverage over query: 480-832 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g001912m | 997 | hhsearch probability: 99.78 Identity: 20% subject length: 590 Length of aligned reigon: 306 Coverage over query: 199-635 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g008195m | 574 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 320 Coverage over query: 122-467 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] |
| 1g013173m | 448 | hhsearch probability: 99.96 Identity: 19% subject length: 590 Length of aligned reigon: 254 Coverage over query: 162-446 Coverage over subject: 12-272 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g001722m | 1020 | hhsearch probability: 99.96 Identity: 18% subject length: 590 Length of aligned reigon: 301 Coverage over query: 326-669 Coverage over subject: 20-339 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3587, Restriction endonuclease [Defense mechanisms] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g000377m | 1605 | hhsearch probability: 99.80 Identity: 19% subject length: 590 Length of aligned reigon: 310 Coverage over query: 1089-1534 Coverage over subject: 16-335 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g047506m | 947 | hhsearch probability: 97.55 Identity: 15% subject length: 590 Length of aligned reigon: 101 Coverage over query: 1-109 Coverage over subject: 234-334 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] |
| 1g013189m | 448 | hhsearch probability: 99.96 Identity: 19% subject length: 590 Length of aligned reigon: 252 Coverage over query: 162-446 Coverage over subject: 12-272 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g010367m | 512 | hhsearch probability: 99.97 Identity: 19% subject length: 590 Length of aligned reigon: 288 Coverage over query: 24-361 Coverage over subject: 16-326 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g008235m | 573 | hhsearch probability: 100.00 Identity: 14% subject length: 590 Length of aligned reigon: 318 Coverage over query: 193-550 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] |
| 1g000069m | 2442 | hhsearch probability: 99.40 Identity: 19% subject length: 590 Length of aligned reigon: 227 Coverage over query: 16-365 Coverage over subject: 101-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g007931m | 584 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 309 Coverage over query: 53-412 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g007044m | 620 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 328 Coverage over query: 122-475 Coverage over subject: 7-347 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] |
| 1g002359m | 931 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 320 Coverage over query: 67-493 Coverage over subject: 7-344 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g005470m | 695 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 316 Coverage over query: 127-468 Coverage over subject: 13-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] |
| 1g006122m | 660 | hhsearch probability: 99.98 Identity: 19% subject length: 590 Length of aligned reigon: 308 Coverage over query: 54-412 Coverage over subject: 21-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] |
| 1g003910m | 787 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 333 Coverage over query: 238-590 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g002357m | 931 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 320 Coverage over query: 67-493 Coverage over subject: 7-344 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g002040m | 976 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 329 Coverage over query: 480-832 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g003887m | 789 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 332 Coverage over query: 238-590 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g004880m | 725 | hhsearch probability: 99.89 Identity: 19% subject length: 590 Length of aligned reigon: 314 Coverage over query: 151-608 Coverage over subject: 13-337 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g003881m | 789 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 332 Coverage over query: 238-590 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] |
| 1g005291m | 704 | hhsearch probability: 99.97 Identity: 19% subject length: 590 Length of aligned reigon: 303 Coverage over query: 9-350 Coverage over subject: 21-340 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] |
| 1g001197m | 1125 | hhsearch probability: 99.83 Identity: 20% subject length: 590 Length of aligned reigon: 307 Coverage over query: 406-840 Coverage over subject: 16-334 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g007368m | 606 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 331 Coverage over query: 159-521 Coverage over subject: 12-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4371, Predicted membrane protein [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g002184m | 955 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 313 Coverage over query: 67-485 Coverage over subject: 7-337 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g011751m | 478 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 293 Coverage over query: 15-390 Coverage over subject: 18-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] |
| 1g038133m | 671 | hhsearch probability: 100.00 Identity: 27% subject length: 590 Length of aligned reigon: 329 Coverage over query: 264-629 Coverage over subject: 7-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g004567m | 744 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 328 Coverage over query: 79-434 Coverage over subject: 7-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g019337m | 342 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 283 Coverage over query: 39-342 Coverage over subject: 6-300 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g007365m | 606 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 331 Coverage over query: 159-521 Coverage over subject: 12-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4371, Predicted membrane protein [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g002181m | 955 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 313 Coverage over query: 67-485 Coverage over subject: 7-337 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g007378m | 606 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 331 Coverage over query: 159-521 Coverage over subject: 12-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4371, Predicted membrane protein [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g009015m | 546 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 321 Coverage over query: 122-468 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g011104m | 493 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 338 Coverage over query: 113-476 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g007280m | 609 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 330 Coverage over query: 162-523 Coverage over subject: 12-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4371, Predicted membrane protein [Function unknown] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g019359m | 342 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 283 Coverage over query: 39-342 Coverage over subject: 6-300 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g002182m | 955 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 313 Coverage over query: 67-485 Coverage over subject: 7-337 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g007090m | 618 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 328 Coverage over query: 243-590 Coverage over subject: 13-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g003311m | 832 | hhsearch probability: 99.87 Identity: 21% subject length: 590 Length of aligned reigon: 306 Coverage over query: 113-546 Coverage over subject: 16-333 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g002183m | 955 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 313 Coverage over query: 67-485 Coverage over subject: 7-337 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g007285m | 609 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 330 Coverage over query: 162-523 Coverage over subject: 12-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4371, Predicted membrane protein [Function unknown] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g011908m | 475 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 320 Coverage over query: 112-451 Coverage over subject: 7-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g011667m | 480 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 310 Coverage over query: 112-446 Coverage over subject: 6-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g019041m | 347 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 284 Coverage over query: 38-347 Coverage over subject: 5-300 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] |
| 1g008602m | 560 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 328 Coverage over query: 127-531 Coverage over subject: 12-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g004103m | 773 | hhsearch probability: 99.90 Identity: 19% subject length: 590 Length of aligned reigon: 306 Coverage over query: 54-487 Coverage over subject: 16-333 |
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g010672m | 504 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 325 Coverage over query: 117-463 Coverage over subject: 13-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g010762m | 502 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 330 Coverage over query: 113-468 Coverage over subject: 7-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] |
| 1g005436m | 697 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 309 Coverage over query: 53-412 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] |
| 1g003721m | 800 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 303 Coverage over query: 295-632 Coverage over subject: 22-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] |
| 1g011901m | 475 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 328 Coverage over query: 112-459 Coverage over subject: 7-346 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g007402m | 605 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 321 Coverage over query: 39-426 Coverage over subject: 7-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g007084m | 618 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 324 Coverage over query: 112-458 Coverage over subject: 7-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g003268m | 835 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 313 Coverage over query: 272-604 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] |
| 1g007085m | 618 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 324 Coverage over query: 112-458 Coverage over subject: 7-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g047890m | 1134 | hhsearch probability: 100.00 Identity: 27% subject length: 590 Length of aligned reigon: 328 Coverage over query: 469-819 Coverage over subject: 9-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g013392m | 444 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 322 Coverage over query: 28-440 Coverage over subject: 4-334 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g006824m | 630 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 325 Coverage over query: 243-589 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g006476m | 643 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 313 Coverage over query: 80-412 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] |
| 1g013965m | 433 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 292 Coverage over query: 117-428 Coverage over subject: 13-316 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g041899m | 650 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 304 Coverage over query: 12-352 Coverage over subject: 19-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g007481m | 602 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 326 Coverage over query: 14-361 Coverage over subject: 11-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g010649m | 505 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 326 Coverage over query: 117-462 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g006800m | 630 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 325 Coverage over query: 243-589 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g042373m | 494 | hhsearch probability: 99.95 Identity: 21% subject length: 590 Length of aligned reigon: 204 Coverage over query: 134-352 Coverage over subject: 7-348 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] |
| 1g003260m | 835 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 313 Coverage over query: 272-604 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g012133m | 470 | hhsearch probability: 99.87 Identity: 25% subject length: 590 Length of aligned reigon: 174 Coverage over query: 1-182 Coverage over subject: 170-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g030396m | 178 | hhsearch probability: 99.80 Identity: 19% subject length: 590 Length of aligned reigon: 160 Coverage over query: 13-177 Coverage over subject: 105-269 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g007106m | 618 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 324 Coverage over query: 112-458 Coverage over subject: 7-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g003267m | 835 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 313 Coverage over query: 272-604 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g014801m | 418 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 319 Coverage over query: 56-389 Coverage over subject: 14-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g009510m | 533 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 332 Coverage over query: 148-502 Coverage over subject: 7-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g008735m | 555 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 297 Coverage over query: 40-418 Coverage over subject: 15-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3910, Predicted ATPase [General function prediction only] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g009496m | 533 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 332 Coverage over query: 148-502 Coverage over subject: 7-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g013727m | 437 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 329 Coverage over query: 19-370 Coverage over subject: 5-347 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] |
| 1g011188m | 491 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 324 Coverage over query: 104-449 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1485, Predicted ATPase [General function prediction only] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g009490m | 533 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 332 Coverage over query: 148-502 Coverage over subject: 7-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g009512m | 533 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 332 Coverage over query: 148-502 Coverage over subject: 7-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g037446m | 1165 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 357 Coverage over query: 109-627 Coverage over subject: 17-388 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g009500m | 533 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 332 Coverage over query: 148-502 Coverage over subject: 7-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g018574m | 354 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 297 Coverage over query: 46-354 Coverage over subject: 7-312 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g015093m | 413 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 328 Coverage over query: 53-394 Coverage over subject: 7-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] |
| 1g010876m | 498 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 326 Coverage over query: 111-456 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] |
| 1g012013m | 473 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 301 Coverage over query: 116-432 Coverage over subject: 12-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g012059m | 472 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 330 Coverage over query: 87-439 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g010111m | 518 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 379 Coverage over query: 38-510 Coverage over subject: 4-387 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g005313m | 703 | hhsearch probability: 100.00 Identity: 27% subject length: 590 Length of aligned reigon: 323 Coverage over query: 193-536 Coverage over subject: 14-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1485, Predicted ATPase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g008956m | 547 | hhsearch probability: 100.00 Identity: 27% subject length: 590 Length of aligned reigon: 324 Coverage over query: 37-381 Coverage over subject: 14-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1485, Predicted ATPase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g006293m | 652 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 309 Coverage over query: 53-412 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] |
| 1g001731m | 1019 | hhsearch probability: 99.90 Identity: 16% subject length: 590 Length of aligned reigon: 314 Coverage over query: 302-790 Coverage over subject: 16-339 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] |
| 1g009494m | 533 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 330 Coverage over query: 148-500 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g015196m | 411 | hhsearch probability: 99.97 Identity: 18% subject length: 590 Length of aligned reigon: 287 Coverage over query: 25-361 Coverage over subject: 17-326 |
COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3587, Restriction endonuclease [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] COG0714, MoxR-like ATPases [General function prediction only] |
| 1g014006m | 432 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 301 Coverage over query: 8-350 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG3910, Predicted ATPase [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g008443m | 565 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 327 Coverage over query: 138-492 Coverage over subject: 12-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG3886, Predicted HKD family nuclease [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g016983m | 379 | hhsearch probability: 99.91 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g012395m | 464 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 331 Coverage over query: 39-446 Coverage over subject: 5-341 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g012434m | 464 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 331 Coverage over query: 39-446 Coverage over subject: 5-341 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g017020m | 379 | hhsearch probability: 99.91 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g012427m | 464 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 331 Coverage over query: 39-446 Coverage over subject: 5-341 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g005084m | 715 | hhsearch probability: 98.04 Identity: 19% subject length: 590 Length of aligned reigon: 161 Coverage over query: 6-178 Coverage over subject: 22-193 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] |
| 1g011620m | 481 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 341 Coverage over query: 39-456 Coverage over subject: 5-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g010422m | 511 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 289 Coverage over query: 16-390 Coverage over subject: 19-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG3910, Predicted ATPase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g002426m | 924 | hhsearch probability: 99.81 Identity: 22% subject length: 590 Length of aligned reigon: 112 Coverage over query: 188-343 Coverage over subject: 227-338 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g011213m | 491 | hhsearch probability: 99.90 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g032027m | 148 | hhsearch probability: 99.32 Identity: 21% subject length: 590 Length of aligned reigon: 95 Coverage over query: 2-100 Coverage over subject: 243-337 |
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4889, Predicted helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] |
| 1g004808m | 729 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 329 Coverage over query: 142-489 Coverage over subject: 12-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g010709m | 503 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 301 Coverage over query: 138-467 Coverage over subject: 12-323 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g011884m | 475 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 334 Coverage over query: 1-450 Coverage over subject: 13-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g015129m | 413 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 332 Coverage over query: 53-398 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g009827m | 524 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 8-350 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] |
| 1g015074m | 413 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 332 Coverage over query: 53-398 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g010028m | 520 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 340 Coverage over query: 40-494 Coverage over subject: 6-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g014085m | 431 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 297 Coverage over query: 14-390 Coverage over subject: 17-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] |
| 1g011149m | 492 | hhsearch probability: 99.90 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] |
| 1g015098m | 413 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 332 Coverage over query: 53-398 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1485, Predicted ATPase [General function prediction only] |
| 1g011060m | 494 | hhsearch probability: 99.90 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] |
| 1g009842m | 524 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 304 Coverage over query: 8-350 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] |
| 1g012794m | 456 | hhsearch probability: 99.79 Identity: 31% subject length: 590 Length of aligned reigon: 119 Coverage over query: 50-168 Coverage over subject: 229-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] |
| 1g015595m | 404 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 330 Coverage over query: 46-389 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1485, Predicted ATPase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] |
| 1g003178m | 842 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 315 Coverage over query: 397-745 Coverage over subject: 13-344 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g004518m | 747 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 325 Coverage over query: 297-652 Coverage over subject: 13-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g010357m | 512 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 337 Coverage over query: 28-455 Coverage over subject: 4-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] |
| 1g014314m | 427 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 322 Coverage over query: 59-396 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] |
| 1g008428m | 565 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 327 Coverage over query: 138-492 Coverage over subject: 12-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3886, Predicted HKD family nuclease [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g008430m | 565 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 327 Coverage over query: 138-492 Coverage over subject: 12-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG3886, Predicted HKD family nuclease [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g017573m | 369 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 333 Coverage over query: 7-354 Coverage over subject: 5-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] |
| 1g008461m | 564 | hhsearch probability: 99.96 Identity: 23% subject length: 590 Length of aligned reigon: 235 Coverage over query: 7-254 Coverage over subject: 106-351 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g015454m | 406 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 327 Coverage over query: 51-390 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g001524m | 1060 | hhsearch probability: 99.91 Identity: 17% subject length: 590 Length of aligned reigon: 315 Coverage over query: 394-883 Coverage over subject: 16-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g008867m | 550 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 303 Coverage over query: 9-350 Coverage over subject: 21-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG4889, Predicted helicase [General function prediction only] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] |
| 1g039378m | 600 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 332 Coverage over query: 191-547 Coverage over subject: 8-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g001526m | 1060 | hhsearch probability: 99.91 Identity: 17% subject length: 590 Length of aligned reigon: 315 Coverage over query: 394-883 Coverage over subject: 16-340 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4889, Predicted helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g007879m | 586 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 327 Coverage over query: 143-488 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g011124m | 493 | hhsearch probability: 99.90 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g007814m | 588 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 321 Coverage over query: 156-502 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g001668m | 1034 | hhsearch probability: 99.80 Identity: 26% subject length: 590 Length of aligned reigon: 184 Coverage over query: 4-237 Coverage over subject: 156-351 |
COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] |
| 1g014486m | 423 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 324 Coverage over query: 59-397 Coverage over subject: 7-339 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1855, ATPase (PilT family) [General function prediction only] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] |
| 1g006500m | 643 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 326 Coverage over query: 142-488 Coverage over subject: 12-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g007831m | 588 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 321 Coverage over query: 156-502 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g042003m | 248 | hhsearch probability: 99.97 Identity: 22% subject length: 590 Length of aligned reigon: 212 Coverage over query: 34-248 Coverage over subject: 104-318 |
COG1201, Lhr Lhr-like helicases [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g005773m | 678 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 327 Coverage over query: 142-489 Coverage over subject: 12-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] |
| 1g010534m | 508 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 297 Coverage over query: 57-372 Coverage over subject: 13-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4128, Zot Zonula occludens toxin [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] |
| 1g016375m | 390 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 329 Coverage over query: 19-371 Coverage over subject: 5-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g006272m | 652 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 320 Coverage over query: 122-467 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] |
| 1g011100m | 493 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 329 Coverage over query: 74-422 Coverage over subject: 8-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1485, Predicted ATPase [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] |
| 1g003100m | 848 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 330 Coverage over query: 392-753 Coverage over subject: 7-346 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g011113m | 493 | hhsearch probability: 99.90 Identity: 26% subject length: 590 Length of aligned reigon: 192 Coverage over query: 6-205 Coverage over subject: 150-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4889, Predicted helicase [General function prediction only] COG5082, AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g013778m | 436 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 330 Coverage over query: 1-410 Coverage over subject: 13-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g008489m | 564 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 297 Coverage over query: 57-372 Coverage over subject: 13-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] |
| 1g029910m | 185 | hhsearch probability: 99.82 Identity: 20% subject length: 590 Length of aligned reigon: 120 Coverage over query: 22-169 Coverage over subject: 227-348 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g013826m | 436 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 330 Coverage over query: 1-410 Coverage over subject: 13-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g015759m | 401 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 312 Coverage over query: 2-336 Coverage over subject: 25-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] |
| 1g045757m | 548 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 327 Coverage over query: 97-540 Coverage over subject: 7-347 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g007829m | 588 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 322 Coverage over query: 155-502 Coverage over subject: 6-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] |
| 1g011428m | 486 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 263 Coverage over query: 2-312 Coverage over subject: 65-345 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g013176m | 448 | hhsearch probability: 100.00 Identity: 24% subject length: 590 Length of aligned reigon: 330 Coverage over query: 40-390 Coverage over subject: 7-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1485, Predicted ATPase [General function prediction only] COG4907, Predicted membrane protein [Function unknown] |
| 1g007743m | 591 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 371 Coverage over query: 115-518 Coverage over subject: 7-387 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g018420m | 356 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 309 Coverage over query: 2-325 Coverage over subject: 22-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g009641m | 530 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 340 Coverage over query: 39-455 Coverage over subject: 5-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] |
| 1g047490m | 323 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 282 Coverage over query: 18-317 Coverage over subject: 58-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] |
| 1g011605m | 481 | hhsearch probability: 100.00 Identity: 22% subject length: 590 Length of aligned reigon: 338 Coverage over query: 39-455 Coverage over subject: 5-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] |
| 1g024287m | 269 | hhsearch probability: 99.98 Identity: 17% subject length: 590 Length of aligned reigon: 218 Coverage over query: 15-255 Coverage over subject: 129-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g011065m | 494 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 326 Coverage over query: 138-475 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1855, ATPase (PilT family) [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g011079m | 494 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 326 Coverage over query: 138-475 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1855, ATPase (PilT family) [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g029806m | 187 | hhsearch probability: 99.84 Identity: 23% subject length: 590 Length of aligned reigon: 106 Coverage over query: 51-184 Coverage over subject: 228-333 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g028124m | 213 | hhsearch probability: 99.85 Identity: 18% subject length: 590 Length of aligned reigon: 150 Coverage over query: 14-197 Coverage over subject: 197-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g015158m | 412 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 327 Coverage over query: 57-396 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5410, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g010196m | 515 | hhsearch probability: 100.00 Identity: 21% subject length: 590 Length of aligned reigon: 369 Coverage over query: 39-496 Coverage over subject: 5-379 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] |
| 1g010836m | 499 | hhsearch probability: 100.00 Identity: 20% subject length: 590 Length of aligned reigon: 297 Coverage over query: 57-372 Coverage over subject: 13-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4128, Zot Zonula occludens toxin [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g015134m | 412 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 327 Coverage over query: 57-396 Coverage over subject: 13-348 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1485, Predicted ATPase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG5410, Uncharacterized protein conserved in bacteria [Function unknown] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] |
| 1g031433m | 159 | hhsearch probability: 99.86 Identity: 22% subject length: 590 Length of aligned reigon: 108 Coverage over query: 22-157 Coverage over subject: 227-334 |
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1204, Superfamily II helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g011446m | 485 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 308 Coverage over query: 139-457 Coverage over subject: 14-330 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g012877m | 454 | hhsearch probability: 99.83 Identity: 22% subject length: 590 Length of aligned reigon: 124 Coverage over query: 18-144 Coverage over subject: 227-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g011462m | 485 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 308 Coverage over query: 139-457 Coverage over subject: 14-330 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1855, ATPase (PilT family) [General function prediction only] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g002135m | 961 | hhsearch probability: 100.00 Identity: 29% subject length: 590 Length of aligned reigon: 325 Coverage over query: 246-641 Coverage over subject: 7-338 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g012322m | 466 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 303 Coverage over query: 8-350 Coverage over subject: 20-340 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] |
| 1g038184m | 121 | hhsearch probability: 99.71 Identity: 28% subject length: 590 Length of aligned reigon: 69 Coverage over query: 1-69 Coverage over subject: 281-349 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] |
| 1g013962m | 433 | hhsearch probability: 100.00 Identity: 25% subject length: 590 Length of aligned reigon: 325 Coverage over query: 6-359 Coverage over subject: 12-347 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3972, Superfamily I DNA and RNA helicases [General function prediction only] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g023157m | 286 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 262 Coverage over query: 7-272 Coverage over subject: 79-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g023139m | 286 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 262 Coverage over query: 7-272 Coverage over subject: 79-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g023177m | 286 | hhsearch probability: 100.00 Identity: 23% subject length: 590 Length of aligned reigon: 262 Coverage over query: 7-272 Coverage over subject: 79-350 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] |
| 1g005837m | 675 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 332 Coverage over query: 281-658 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g005828m | 675 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 332 Coverage over query: 281-658 Coverage over subject: 7-349 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g006319m | 650 | hhsearch probability: 99.31 Identity: 26% subject length: 590 Length of aligned reigon: 106 Coverage over query: 32-148 Coverage over subject: 242-347 |
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] |
| 1g003416m | 821 | hhsearch probability: 97.59 Identity: 24% subject length: 590 Length of aligned reigon: 72 Coverage over query: 352-423 Coverage over subject: 517-588 |
COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG0749, PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG2176, PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] |
| 1g006313m | 651 | hhsearch probability: 98.04 Identity: 24% subject length: 590 Length of aligned reigon: 72 Coverage over query: 182-253 Coverage over subject: 517-588 |
COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG0749, PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g037139m | 135 | hhsearch probability: 99.87 Identity: 38% subject length: 590 Length of aligned reigon: 94 Coverage over query: 2-95 Coverage over subject: 254-347 |
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] |
| 1g014134m | 430 | hhsearch probability: 100.00 Identity: 47% subject length: 590 Length of aligned reigon: 347 Coverage over query: 26-379 Coverage over subject: 5-351 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] COG4626, Phage terminase-like protein, large subunit [General function prediction only] |
| 1g006352m | 649 | hhsearch probability: 98.01 Identity: 24% subject length: 590 Length of aligned reigon: 72 Coverage over query: 180-251 Coverage over subject: 517-588 |
COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG0749, PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g009712m | 528 | hhsearch probability: 97.45 Identity: 24% subject length: 590 Length of aligned reigon: 72 Coverage over query: 59-130 Coverage over subject: 517-588 |
COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] |
| 1g015049m | 414 | hhsearch probability: 99.92 Identity: 20% subject length: 590 Length of aligned reigon: 198 Coverage over query: 6-219 Coverage over subject: 130-348 |
COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g014999m | 414 | hhsearch probability: 99.92 Identity: 20% subject length: 590 Length of aligned reigon: 198 Coverage over query: 6-219 Coverage over subject: 130-348 |
COG1204, Superfamily II helicase [General function prediction only] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1110, Reverse gyrase [DNA replication, recombination, and repair] |
| 1g044490m | 430 | hhsearch probability: 99.81 Identity: 25% subject length: 590 Length of aligned reigon: 150 Coverage over query: 1-181 Coverage over subject: 439-588 |
COG4955, Uncharacterized protein conserved in bacteria [Function unknown] COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG2771, CsgD DNA-binding HTH domain-containing proteins [Transcription] |
| 1g037567m | 374 | hhsearch probability: 100.00 Identity: 44% subject length: 590 Length of aligned reigon: 367 Coverage over query: 3-374 Coverage over subject: 7-377 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] |
| 1g003587m | 809 | hhsearch probability: 100.00 Identity: 19% subject length: 590 Length of aligned reigon: 391 Coverage over query: 285-728 Coverage over subject: 23-460 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g004900m | 724 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 401 Coverage over query: 24-441 Coverage over subject: 3-403 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g026168m | 242 | hhsearch probability: 100.00 Identity: 43% subject length: 590 Length of aligned reigon: 232 Coverage over query: 1-241 Coverage over subject: 170-402 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] |
| 1g016133m | 394 | hhsearch probability: 100.00 Identity: 44% subject length: 590 Length of aligned reigon: 310 Coverage over query: 2-328 Coverage over subject: 94-403 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g003593m | 808 | hhsearch probability: 100.00 Identity: 18% subject length: 590 Length of aligned reigon: 460 Coverage over query: 277-800 Coverage over subject: 13-542 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1204, Superfamily II helicase [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] |
| 1g012746m | 457 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 389 Coverage over query: 25-428 Coverage over subject: 4-393 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] |
| 1g005742m | 679 | hhsearch probability: 100.00 Identity: 41% subject length: 590 Length of aligned reigon: 386 Coverage over query: 160-678 Coverage over subject: 4-398 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g004098m | 774 | hhsearch probability: 100.00 Identity: 38% subject length: 590 Length of aligned reigon: 471 Coverage over query: 160-770 Coverage over subject: 4-482 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g010884m | 498 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 400 Coverage over query: 24-440 Coverage over subject: 3-402 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g001155m | 1136 | hhsearch probability: 100.00 Identity: 42% subject length: 590 Length of aligned reigon: 571 Coverage over query: 380-1024 Coverage over subject: 4-589 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1204, Superfamily II helicase [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] |
| 1g005741m | 679 | hhsearch probability: 100.00 Identity: 41% subject length: 590 Length of aligned reigon: 386 Coverage over query: 160-678 Coverage over subject: 4-398 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g012728m | 457 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 389 Coverage over query: 25-428 Coverage over subject: 4-393 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG4626, Phage terminase-like protein, large subunit [General function prediction only] COG2909, MalT ATP-dependent transcriptional regulator [Transcription] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair] |
| 1g009048m | 545 | hhsearch probability: 100.00 Identity: 45% subject length: 590 Length of aligned reigon: 401 Coverage over query: 24-441 Coverage over subject: 3-403 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] |
| 1g010655m | 505 | hhsearch probability: 100.00 Identity: 45% subject length: 590 Length of aligned reigon: 401 Coverage over query: 25-442 Coverage over subject: 4-404 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] |
| 1g035988m | 692 | hhsearch probability: 100.00 Identity: 39% subject length: 590 Length of aligned reigon: 541 Coverage over query: 78-650 Coverage over subject: 4-589 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG0349, Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG3421, Uncharacterized protein conserved in bacteria [Function unknown] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] |
| 1g009843m | 524 | hhsearch probability: 100.00 Identity: 43% subject length: 590 Length of aligned reigon: 407 Coverage over query: 24-464 Coverage over subject: 3-409 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] |
| 1g042872m | 381 | hhsearch probability: 99.89 Identity: 42% subject length: 590 Length of aligned reigon: 117 Coverage over query: 214-381 Coverage over subject: 6-143 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] |
| 1g009675m | 529 | hhsearch probability: 100.00 Identity: 43% subject length: 590 Length of aligned reigon: 405 Coverage over query: 25-471 Coverage over subject: 4-411 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG3587, Restriction endonuclease [Defense mechanisms] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG3973, Superfamily I DNA and RNA helicases [General function prediction only] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] |
| 1g010570m | 507 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 401 Coverage over query: 24-441 Coverage over subject: 3-403 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |
| 1g011387m | 487 | hhsearch probability: 100.00 Identity: 43% subject length: 590 Length of aligned reigon: 408 Coverage over query: 25-474 Coverage over subject: 4-414 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG4889, Predicted helicase [General function prediction only] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] |
| 1g010563m | 507 | hhsearch probability: 100.00 Identity: 46% subject length: 590 Length of aligned reigon: 401 Coverage over query: 24-441 Coverage over subject: 3-403 |
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] COG1204, Superfamily II helicase [General function prediction only] COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] COG1202, Superfamily II helicase, archaea-specific [General function prediction only] COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] COG1201, Lhr Lhr-like helicases [General function prediction only] COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair] COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] COG4889, Predicted helicase [General function prediction only] COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] COG3587, Restriction endonuclease [Defense mechanisms] COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion] COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair] COG1110, Reverse gyrase [DNA replication, recombination, and repair] COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] COG4185, Uncharacterized protein conserved in bacteria [Function unknown] COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] |